Moc03g29490 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc03g29490
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Unknown protein
Location	chr3: 21068676 .. 21069076 (+)
RNA-Seq Expression	Moc03g29490
Synteny	Moc03g29490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGGACAGAAGAGTCATTTCAGTAGATCAGCCGGTGAAGATATGGATATCGACGGCCAAAATAAGAATGGTGAAGATGCCGAAGAAGAGGATGGTATGGACGATAATGGCCTTGCCGTTGGTGGTGAAGCTTCCGAACTCCACCATGCGGGCGTTTCCCGGCAACTGAAAGAGCAGCCCCGGTGAGAGGAGAATGAAGAGCAGTAAACCGAACAGAACCGGCGCCCAGTCCAGCATTGTTCCTCCGGCTCCGGCTCCGGCGACGCATTCAACGAATTAAGGAGGTGGCTGTTCAATTCTAAGGCTGGCTCTGCCCTTCTATTTATAGAGTAAGAGATTTGGTTGAGGTTGGATTGAGTATAATCTCCACCGCCGTCGCTGATTTGGGTTTGAATTAG

mRNA sequence

ATGGAGGGACAGAAGAGTCATTTCAGTAGATCAGCCGGTGAAGATATGGATATCGACGGCCAAAATAAGAATGGTGAAGATGCCGAAGAAGAGGATGGTATGGACGATAATGGCCTTGCCGTTGGTGGTGAAGCTTCCGAACTCCACCATGCGGGCGTTTCCCGGCAACTGAAAGAGCAGCCCCGAGTAAGAGATTTGGTTGAGGTTGGATTGAGTATAATCTCCACCGCCGTCGCTGATTTGGGTTTGAATTAG

Coding sequence (CDS)

ATGGAGGGACAGAAGAGTCATTTCAGTAGATCAGCCGGTGAAGATATGGATATCGACGGCCAAAATAAGAATGGTGAAGATGCCGAAGAAGAGGATGGTATGGACGATAATGGCCTTGCCGTTGGTGGTGAAGCTTCCGAACTCCACCATGCGGGCGTTTCCCGGCAACTGAAAGAGCAGCCCCGAGTAAGAGATTTGGTTGAGGTTGGATTGAGTATAATCTCCACCGCCGTCGCTGATTTGGGTTTGAATTAG

Protein sequence

MEGQKSHFSRSAGEDMDIDGQNKNGEDAEEEDGMDDNGLAVGGEASELHHAGVSRQLKEQPRVRDLVEVGLSIISTAVADLGLN

Homology

[Close]

BLAST of Moc03g29490 vs. NCBI nr
Match: KGN64423.2 (hypothetical protein Csa_014303 [Cucumis sativus])

HSP 1 Score: 82.4 bits (202), Expect = 2.0e-12
Identity = 50/84 (59.52%), Postives = 61/84 (72.62%), Query Frame = 0


Query: 2  EGQKSHFSRSAGEDMDIDGQNKNGEDAEEEDGMDDNGLAVGGEASELHHAGVSRQLKEQP 61
          E QKSHF  SAGEDM+IDGQN+NGED E+E+GMD+NGLAV GEASE +H  +S QL++Q 
Sbjct: 5  EEQKSHFQNSAGEDMNIDGQNENGEDTEKENGMDNNGLAVSGEASEFNHTRISGQLEKQA 64

Query: 62 RVRD-----LVEVGLSI-ISTAVA 80
          R  +      VE  +   ISTAVA
Sbjct: 65 RREENEEKVPVETWIDFKISTAVA 88

[Close]

BLAST of Moc03g29490 vs. NCBI nr
Match: KAA0055339.1 (hypothetical protein E6C27_scaffold80G001830 [Cucumis melo var. makuwa] >TYJ99265.1 hypothetical protein E5676_scaffold248G004770 [Cucumis melo var. makuwa])

HSP 1 Score: 82.4 bits (202), Expect = 2.0e-12
Identity = 42/61 (68.85%), Postives = 50/61 (81.97%), Query Frame = 0


Query: 2  EGQKSHFSRSAGEDMDIDGQNKNGEDAEEEDGMDDNGLAVGGEASELHHAGVSRQLKEQP 61
          EGQKSHF  SAGEDM+IDGQN+NGED E+E+ MDDN LAV GEASE +H  +S QL++Q 
Sbjct: 5  EGQKSHFQNSAGEDMNIDGQNENGEDTEKENSMDDNSLAVSGEASEFNHTRISGQLEKQA 64

Query: 62 R 63
          R
Sbjct: 65 R 65

[Close]

BLAST of Moc03g29490 vs. NCBI nr
Match: KAG9445923.1 (hypothetical protein H6P81_012051 [Aristolochia fimbriata])

HSP 1 Score: 54.3 bits (129), Expect = 5.9e-04
Identity = 26/51 (50.98%), Postives = 38/51 (74.51%), Query Frame = 0


Query: 12 AGEDMDIDGQNKNGEDAEEEDGMDDNGLAVGGEASELHHAGVSRQLKEQPR 63
          +G D+D DG  ++G+ AEE+DG+D++G   G E  ELHH+ + RQLK+QPR
Sbjct: 23 SGVDVDADGDEEDGDQAEEDDGVDEDGDGAGLEVVELHHSALPRQLKQQPR 73

[Close]

BLAST of Moc03g29490 vs. ExPASy TrEMBL
Match: A0A5D3BLR1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G004770 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 9.8e-13
Identity = 42/61 (68.85%), Postives = 50/61 (81.97%), Query Frame = 0


Query: 2  EGQKSHFSRSAGEDMDIDGQNKNGEDAEEEDGMDDNGLAVGGEASELHHAGVSRQLKEQP 61
          EGQKSHF  SAGEDM+IDGQN+NGED E+E+ MDDN LAV GEASE +H  +S QL++Q 
Sbjct: 5  EGQKSHFQNSAGEDMNIDGQNENGEDTEKENSMDDNSLAVSGEASEFNHTRISGQLEKQA 64

Query: 62 R 63
          R
Sbjct: 65 R 65

[Close]

BLAST of Moc03g29490 vs. ExPASy TrEMBL
Match: A0A0A0LTW0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050580 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.3e-12
Identity = 42/61 (68.85%), Postives = 51/61 (83.61%), Query Frame = 0


Query: 2  EGQKSHFSRSAGEDMDIDGQNKNGEDAEEEDGMDDNGLAVGGEASELHHAGVSRQLKEQP 61
          E QKSHF  SAGEDM+IDGQN+NGED E+E+GMD+NGLAV GEASE +H  +S QL++Q 
Sbjct: 5  EEQKSHFQNSAGEDMNIDGQNENGEDTEKENGMDNNGLAVSGEASEFNHTRISGQLEKQA 64

Query: 62 R 63
          R
Sbjct: 65 R 65

[Close]

BLAST of Moc03g29490 vs. ExPASy TrEMBL
Match: A0A0A9CRB9 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.7e-04
Identity = 26/50 (52.00%), Postives = 37/50 (74.00%), Query Frame = 0


Query: 13 GEDMDIDGQNKNGEDAEEEDGMDDNGLAVGGEASELHHAGVSRQLKEQPR 63
          G D+D DG N++GE+AEE+DG+D++G   GG  +ELHH     QL++QPR
Sbjct: 31 GVDVDADGDNEDGEEAEEDDGVDEDGDGAGGHVAELHHPRPRGQLEQQPR 80

The following BLAST results are available for this feature:

BLAST of Moc03g29490 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64423.2	2.0e-12	59.52	hypothetical protein Csa_014303 [Cucumis sativus]	[more]
KAA0055339.1	2.0e-12	68.85	hypothetical protein E6C27_scaffold80G001830 [Cucumis melo var. makuwa] >TYJ9926...	[more]
KAG9445923.1	5.9e-04	50.98	hypothetical protein H6P81_012051 [Aristolochia fimbriata]	[more]

BLAST of Moc03g29490 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc03g29490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BLR1	9.8e-13	68.85	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LTW0	1.3e-12	68.85	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050580 PE=4 SV=1	[more]
A0A0A9CRB9	3.7e-04	52.00	Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1	[more]

BLAST of Moc03g29490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc03g29490.1	Moc03g29490.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0042651	thylakoid membrane
molecular_function	GO:0005347	ATP transmembrane transporter activity