Moc03g28950 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc03g28950
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Location	chr3: 20737608 .. 20738970 (-)
RNA-Seq Expression	Moc03g28950
Synteny	Moc03g28950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTAAGAGAGGCCTAATCAGTCCCCCGAGAGCCTTTTCTGGACCAAACAATGCCGCCGCAAATCCGCCGATGAGGCCCAATTACAGGATGTCACCACCCCCCCGACCCACGACGGTGGTCAATCCCAGCGAGCAGATGTTTTACGAGCATTGGTTAAAAGCCACTTCTAGTTCTAATGCCATACGTGCAACCCATATCGCTCCGCCAAATCCTTACGATCTGCAGAATCATCAGAAGAAACTAGACCACAACAACAACAACAATTCCAGCACCAAAACCACAGCGCCCCCTCCTACTCGCCACCAGAGGCTGCGTAATGGGGCCACGCTAATTTCCAACAACACTGCTCCAAGACCAAAAGGACCCACTGCTTCTGGTTCCAGATCCGATCCCCTTGACGCCAATCTGATCGCTCCAAAATTTTCTGATTCTCCAAATAATTCTTCTCCCAACCATTTATCCATCCATGGATCGGGTCAACGCCAAAATATCAGCAACGTCGGTAATAACGGTGGAACCGCTTATACTTCACTTGCTCATCCTCAACTTAACAATCACTTACACAAACTTTCTAGAGGCGGAAGCGGTGGCAATGACGGTGAGACTTCTTACCTTGTATATTCTTAAAGATACAACCATCGAAAACAAAACAACTTTAAAAAGATTTATAATAAACGTAGACTACCATGGTAATTGCAAATTGGTTTTAAAATCCATCAATATTCATATAGGTCAATTATTCCATAATTGGTAGTTTAATTGTTTTTATTTAGTTAAGCAGTTAATTTAGTTTATTTCTTTTATTAATTTGTCAATTTTTTTTGAGATATATTAATTTGTCAATTAGTTTGGAGTTTAATTGCAATTTCTTATATAATGTTTAAAGTTTTAAAAGTCAAATAATGCAAAAACATTTTGAATTTAAAATGTAAGGCTAACTAGAACTATGCTCATTTTTTTAGCTTATCCCGAAATCCCCATATACGTAGGTAAAATTCCTATATATGGTGGTCAAGATGATCACATTGTCCTTCATTCGAAATGTTCTTCACAAAGCAATGTTCCGAGAATATTCGAAATTTACAAGGACATTGCATCTCATCGTCAAGGAAACTCATCTATTACATCTTACTTCACAAGGTTAAAGACATTGTGGGACGAACTTGAAACCTACAATGATCTTTCTCAATGTTGTTCCTCCGGTGAACATGTGGAGAGAGAAAAAGTTATGCAATTTCTCGTGGGGTTAAATGATCCATATTCCACTATCTGCCACCAAATCCTTCTTATTCGGCCGTTTCCAACAGTGGAGAAAGCATATTCTATTGTAATTCGAGAAGAGAAACGGATGTGGAGCTGA

mRNA sequence

ATGACTAAGAGAGGCCTAATCAGTCCCCCGAGAGCCTTTTCTGGACCAAACAATGCCGCCGCAAATCCGCCGATGAGGCCCAATTACAGGATGTCACCACCCCCCCGACCCACGACGGTGGTCAATCCCAGCGAGCAGATGTTTTACGAGCATTGGTTAAAAGCCACTTCTAGTTCTAATGCCATACGTGCAACCCATATCGCTCCGCCAAATCCTTACGATCTGCAGAATCATCAGAAGAAACTAGACCACAACAACAACAACAATTCCAGCACCAAAACCACAGCGCCCCCTCCTACTCGCCACCAGAGGCTGCGTAATGGGGCCACGCTAATTTCCAACAACACTGCTCCAAGACCAAAAGGACCCACTGCTTCTGGTTCCAGATCCGATCCCCTTGACGCCAATCTGATCGCTCCAAAATTTTCTGATTCTCCAAATAATTCTTCTCCCAACCATTTATCCATCCATGGATCGGGTCAACGCCAAAATATCAGCAACGTCGGTAATAACGGTGGAACCGCTTATACTTCACTTGCTCATCCTCAACTTAACAATCACTTACACAAACTTTCTAGAGGCGGAAGCGGTGGCAATGACGGTAAAATTCCTATATATGGTGGTCAAGATGATCACATTGTCCTTCATTCGAAATGTTCTTCACAAAGCAATGTTCCGAGAATATTCGAAATTTACAAGGACATTGCATCTCATCGTCAAGGAAACTCATCTATTACATCTTACTTCACAAGGTTAAAGACATTGTGGGACGAACTTGAAACCTACAATGATCTTTCTCAATGTTGTTCCTCCGGTGAACATGTGGAGAGAGAAAAAGTTATGCAATTTCTCGTGGGGTTAAATGATCCATATTCCACTATCTGCCACCAAATCCTTCTTATTCGGCCGTTTCCAACAGTGGAGAAAGCATATTCTATTGTAATTCGAGAAGAGAAACGGATGTGGAGCTGA

Coding sequence (CDS)

ATGACTAAGAGAGGCCTAATCAGTCCCCCGAGAGCCTTTTCTGGACCAAACAATGCCGCCGCAAATCCGCCGATGAGGCCCAATTACAGGATGTCACCACCCCCCCGACCCACGACGGTGGTCAATCCCAGCGAGCAGATGTTTTACGAGCATTGGTTAAAAGCCACTTCTAGTTCTAATGCCATACGTGCAACCCATATCGCTCCGCCAAATCCTTACGATCTGCAGAATCATCAGAAGAAACTAGACCACAACAACAACAACAATTCCAGCACCAAAACCACAGCGCCCCCTCCTACTCGCCACCAGAGGCTGCGTAATGGGGCCACGCTAATTTCCAACAACACTGCTCCAAGACCAAAAGGACCCACTGCTTCTGGTTCCAGATCCGATCCCCTTGACGCCAATCTGATCGCTCCAAAATTTTCTGATTCTCCAAATAATTCTTCTCCCAACCATTTATCCATCCATGGATCGGGTCAACGCCAAAATATCAGCAACGTCGGTAATAACGGTGGAACCGCTTATACTTCACTTGCTCATCCTCAACTTAACAATCACTTACACAAACTTTCTAGAGGCGGAAGCGGTGGCAATGACGGTAAAATTCCTATATATGGTGGTCAAGATGATCACATTGTCCTTCATTCGAAATGTTCTTCACAAAGCAATGTTCCGAGAATATTCGAAATTTACAAGGACATTGCATCTCATCGTCAAGGAAACTCATCTATTACATCTTACTTCACAAGGTTAAAGACATTGTGGGACGAACTTGAAACCTACAATGATCTTTCTCAATGTTGTTCCTCCGGTGAACATGTGGAGAGAGAAAAAGTTATGCAATTTCTCGTGGGGTTAAATGATCCATATTCCACTATCTGCCACCAAATCCTTCTTATTCGGCCGTTTCCAACAGTGGAGAAAGCATATTCTATTGTAATTCGAGAAGAGAAACGGATGTGGAGCTGA

Protein sequence

MTKRGLISPPRAFSGPNNAAANPPMRPNYRMSPPPRPTTVVNPSEQMFYEHWLKATSSSNAIRATHIAPPNPYDLQNHQKKLDHNNNNNSSTKTTAPPPTRHQRLRNGATLISNNTAPRPKGPTASGSRSDPLDANLIAPKFSDSPNNSSPNHLSIHGSGQRQNISNVGNNGGTAYTSLAHPQLNNHLHKLSRGGSGGNDGKIPIYGGQDDHIVLHSKCSSQSNVPRIFEIYKDIASHRQGNSSITSYFTRLKTLWDELETYNDLSQCCSSGEHVEREKVMQFLVGLNDPYSTICHQILLIRPFPTVEKAYSIVIREEKRMWS

Homology

[Close]

BLAST of Moc03g28950 vs. NCBI nr
Match: XP_022137506.1 (uncharacterized protein LOC111008934 isoform X2 [Momordica charantia])

HSP 1 Score: 657.9 bits (1696), Expect = 4.5e-185
Identity = 323/323 (100.00%), Postives = 323/323 (100.00%), Query Frame = 0


Query: 1   MTKRGLISPPRAFSGPNNAAANPPMRPNYRMSPPPRPTTVVNPSEQMFYEHWLKATSSSN 60
           MTKRGLISPPRAFSGPNNAAANPPMRPNYRMSPPPRPTTVVNPSEQMFYEHWLKATSSSN
Sbjct: 1   MTKRGLISPPRAFSGPNNAAANPPMRPNYRMSPPPRPTTVVNPSEQMFYEHWLKATSSSN 60

Query: 61  AIRATHIAPPNPYDLQNHQKKLDHNNNNNSSTKTTAPPPTRHQRLRNGATLISNNTAPRP 120
           AIRATHIAPPNPYDLQNHQKKLDHNNNNNSSTKTTAPPPTRHQRLRNGATLISNNTAPRP
Sbjct: 61  AIRATHIAPPNPYDLQNHQKKLDHNNNNNSSTKTTAPPPTRHQRLRNGATLISNNTAPRP 120

Query: 121 KGPTASGSRSDPLDANLIAPKFSDSPNNSSPNHLSIHGSGQRQNISNVGNNGGTAYTSLA 180
           KGPTASGSRSDPLDANLIAPKFSDSPNNSSPNHLSIHGSGQRQNISNVGNNGGTAYTSLA
Sbjct: 121 KGPTASGSRSDPLDANLIAPKFSDSPNNSSPNHLSIHGSGQRQNISNVGNNGGTAYTSLA 180

Query: 181 HPQLNNHLHKLSRGGSGGNDGKIPIYGGQDDHIVLHSKCSSQSNVPRIFEIYKDIASHRQ 240
           HPQLNNHLHKLSRGGSGGNDGKIPIYGGQDDHIVLHSKCSSQSNVPRIFEIYKDIASHRQ
Sbjct: 181 HPQLNNHLHKLSRGGSGGNDGKIPIYGGQDDHIVLHSKCSSQSNVPRIFEIYKDIASHRQ 240

Query: 241 GNSSITSYFTRLKTLWDELETYNDLSQCCSSGEHVEREKVMQFLVGLNDPYSTICHQILL 300
           GNSSITSYFTRLKTLWDELETYNDLSQCCSSGEHVEREKVMQFLVGLNDPYSTICHQILL
Sbjct: 241 GNSSITSYFTRLKTLWDELETYNDLSQCCSSGEHVEREKVMQFLVGLNDPYSTICHQILL 300

Query: 301 IRPFPTVEKAYSIVIREEKRMWS 324
           IRPFPTVEKAYSIVIREEKRMWS
Sbjct: 301 IRPFPTVEKAYSIVIREEKRMWS 323

[Close]

BLAST of Moc03g28950 vs. NCBI nr
Match: XP_022137505.1 (uncharacterized protein LOC111008934 isoform X1 [Momordica charantia])

HSP 1 Score: 650.2 bits (1676), Expect = 9.3e-183
Identity = 323/332 (97.29%), Postives = 323/332 (97.29%), Query Frame = 0


Query: 1   MTKRGLISPPRAFSGPNNAAANPPMRPNYRMSPPPRPTTVVNPSEQMFYEHWLKATSSSN 60
           MTKRGLISPPRAFSGPNNAAANPPMRPNYRMSPPPRPTTVVNPSEQMFYEHWLKATSSSN
Sbjct: 1   MTKRGLISPPRAFSGPNNAAANPPMRPNYRMSPPPRPTTVVNPSEQMFYEHWLKATSSSN 60

Query: 61  AIRATHIAPPNPYDLQNHQKKLDHNNNNNSSTKTTAPPPTRHQRLRNGATLISNNTAPRP 120
           AIRATHIAPPNPYDLQNHQKKLDHNNNNNSSTKTTAPPPTRHQRLRNGATLISNNTAPRP
Sbjct: 61  AIRATHIAPPNPYDLQNHQKKLDHNNNNNSSTKTTAPPPTRHQRLRNGATLISNNTAPRP 120

Query: 121 KGPTASGSRSDPLDANLIAPKFSDSPNNSSPNHLSIHGSGQRQNISNVGNNGGTAYTSLA 180
           KGPTASGSRSDPLDANLIAPKFSDSPNNSSPNHLSIHGSGQRQNISNVGNNGGTAYTSLA
Sbjct: 121 KGPTASGSRSDPLDANLIAPKFSDSPNNSSPNHLSIHGSGQRQNISNVGNNGGTAYTSLA 180

Query: 181 HPQLNNHLHKLSRGGSGGND---------GKIPIYGGQDDHIVLHSKCSSQSNVPRIFEI 240
           HPQLNNHLHKLSRGGSGGND         GKIPIYGGQDDHIVLHSKCSSQSNVPRIFEI
Sbjct: 181 HPQLNNHLHKLSRGGSGGNDAYPEIPIYVGKIPIYGGQDDHIVLHSKCSSQSNVPRIFEI 240

Query: 241 YKDIASHRQGNSSITSYFTRLKTLWDELETYNDLSQCCSSGEHVEREKVMQFLVGLNDPY 300
           YKDIASHRQGNSSITSYFTRLKTLWDELETYNDLSQCCSSGEHVEREKVMQFLVGLNDPY
Sbjct: 241 YKDIASHRQGNSSITSYFTRLKTLWDELETYNDLSQCCSSGEHVEREKVMQFLVGLNDPY 300

Query: 301 STICHQILLIRPFPTVEKAYSIVIREEKRMWS 324
           STICHQILLIRPFPTVEKAYSIVIREEKRMWS
Sbjct: 301 STICHQILLIRPFPTVEKAYSIVIREEKRMWS 332

[Close]

BLAST of Moc03g28950 vs. NCBI nr
Match: XP_022137556.1 (uncharacterized protein LOC111008978 [Momordica charantia])

HSP 1 Score: 272.7 bits (696), Expect = 4.1e-69
Identity = 185/363 (50.96%), Postives = 223/363 (61.43%), Query Frame = 0


Query: 4   RGLISPPRAFSGPNNAAANPPMRP-----NYRMSPPPRPT--TVVNPSEQMFYEHWLKAT 63
           RGLISPPR+F+G        P RP     ++ MS   RPT  +V +PS+        +  
Sbjct: 3   RGLISPPRSFAG-------SPSRPLADDLHFYMSQSRRPTASSVADPSDH-------RTP 62

Query: 64  SSSNAIRATHIAPPNPYDLQNHQKKLDHNNNNNSSTKTTAPPPTRHQRL--RN------- 123
             +   +  H A  N  DLQN+ KKLD  NNNNSSTKTTA   +    +  RN       
Sbjct: 63  PRTRTSQRRHTAEKNADDLQNYLKKLD-RNNNNSSTKTTAKISSSRPSISPRNGLEIEQP 122

Query: 124 -GATLISNNTAPRPKGPTASGS----RSDPLDANLIAPKFSDSPNNSSPNHLSIHGSGQR 183
            G T IS+N AP+PK   A  S     S   +ANLIAPKF DSP+NSSP HLSIHGSGQR
Sbjct: 123 RGPTPISHNAAPKPKPAPAIDSPAPDASTANNANLIAPKFFDSPHNSSPTHLSIHGSGQR 182

Query: 184 QNISNVGNNGGTAYTSLAHPQLNNHLHKLSRGGSGGND-----GKIPIYGGQD-DHIVLH 243
           QNI+NVG+NGG ++T LAHPQLN++LHKLS  G    +     G+IPIY G+   +IVL 
Sbjct: 183 QNINNVGSNGGASHTPLAHPQLNSNLHKLSGDGDACVEIPIYIGEIPIYVGKHVANIVLR 242

Query: 244 -------------SKCSSQSNVPRIFEIYKDIASHRQGNSSITSYFTRLKTLWDELETYN 303
                         + SSQSN   IF+IYK  ASHRQ +SS+TSYF +LK LWD+L  Y+
Sbjct: 243 ENSIYKPVGSNTKQEWSSQSNDSEIFQIYKGFASHRQKSSSVTSYFKKLKILWDQLRNYS 302

Query: 304 DLSQCCSSG------EHVEREKVMQFLVGLNDPYSTICHQILLIRPFPTVEKAYSIVIRE 321
           DL QC S G      EHVEREKV+QFLVGLND YSTI  QIL IRP PTVEKAY + I+E
Sbjct: 303 DLPQCYSLGAKQKLSEHVEREKVIQFLVGLNDSYSTIVSQILQIRPLPTVEKAYFLTIQE 350

[Close]

BLAST of Moc03g28950 vs. NCBI nr
Match: XP_022137024.1 (uncharacterized protein LOC111008588 [Momordica charantia] >XP_022137025.1 uncharacterized protein LOC111008588 [Momordica charantia] >XP_022137026.1 uncharacterized protein LOC111008588 [Momordica charantia])

HSP 1 Score: 252.3 bits (643), Expect = 5.7e-63
Identity = 183/372 (49.19%), Postives = 208/372 (55.91%), Query Frame = 0


Query: 1   MTKRGLISPPRAFSGP------NNAAANPPMRPNYRMSPPPRPTTVVNPSEQMFYEHWLK 60
           MT RGLISPPR+ S P      NN A NPP RPNY MSP  RPTT    +EQ   +   K
Sbjct: 47  MTLRGLISPPRSRSSPRDFRPHNNGAPNPPSRPNY-MSPRRRPTT----AEQQHTQTHRK 106

Query: 61  ATSSSNAIRATHIAP------------------PNPYDLQNHQKKLDHNNNNNSSTKTTA 120
              S+ A RAT  +P                  PNP DL N QKKLD            +
Sbjct: 107 --PSATATRATKKSPPRIRPSPKPTAPIVPSRRPNPNDLHN-QKKLDTKTTPKIGGAKPS 166

Query: 121 PPPTRHQRLRNGA------TLISNNTAPRPKG--PTASGSRSDPLDANLIAPKFSDSPNN 180
            P T+ QRLRNG       T IS NT P+PK     AS SRSD       +P  + SP  
Sbjct: 167 SPRTQPQRLRNGVEPPRGPTPISKNTTPKPKPAIAIASASRSD-------SPAANSSP-- 226

Query: 181 SSPNHLSIHGSGQRQNISNVGNNGGTAYTSLAHPQLNNHLHKLSRGGSGGNDGKIPIYGG 240
            S  HL   GS Q  ++ N     G  YT LA PQLNNHL +LS            I G 
Sbjct: 227 -SSKHLPSPGSAQHHDMKNHSPYSGGTYTPLADPQLNNHLQRLS------------IDGK 286

Query: 241 QDDHIVLHSKC------------SSQSNVPRIFEIYKDIASHRQGNSSITSYFTRLKTLW 300
               I+LH+              S QSN PRIF+IYKDIASHRQ NSS+TSYFT+LK LW
Sbjct: 287 DLASIILHANSIYESIGSDTMEESFQSNAPRIFQIYKDIASHRQENSSVTSYFTKLKILW 346

Query: 301 DELETY-NDLSQCCSSGE------HVEREKVMQFLVGLNDPYSTICHQILLIRPFPTVEK 322
           DELETY +D+ QCCS G       HVEREKVMQFL+GLN+ YSTIC QILLI+PFPT+EK
Sbjct: 347 DELETYSDDVPQCCSCGAMEKLSGHVEREKVMQFLMGLNNSYSTICPQILLIQPFPTMEK 388

[Close]

BLAST of Moc03g28950 vs. NCBI nr
Match: XP_022137569.1 (uncharacterized protein LOC111008986 [Momordica charantia])

HSP 1 Score: 209.9 bits (533), Expect = 3.2e-50
Identity = 157/344 (45.64%), Postives = 187/344 (54.36%), Query Frame = 0


Query: 1   MTKRGLISPPRA-FS-----GPNNAAANPPMRPNYRMSPPPRPTT--VVNPSEQMFYEHW 60
           M  RGLISPP++ FS       NNAAANPP  PNY MS   R T   VVNP +Q      
Sbjct: 4   MRGRGLISPPKSRFSVTESDSQNNAAANPPSMPNY-MSATRRSTAARVVNPKQQQTTH-- 63

Query: 61  LKATSSSNAIRATHIAPPNPYDLQNHQKK------LDHNNNNNSSTKTTAPPPTRHQRLR 120
            K T  SNAIRAT  + P P  +   +++        + +N+NS+TK T    T     R
Sbjct: 64  TKPTFGSNAIRATKNSSPKPTPVVPSRRRPTWAPNNPNGHNDNSTTKLTIAKITTS---R 123

Query: 121 NGATLISNNTAPRPKGPTASGSRSDPLDANLIAPKFSDSPNNSSPNHLSIHGSGQRQ--N 180
           N      N    +P+GPT     S                        S HGSG  Q  N
Sbjct: 124 NSNV---NGVQQQPRGPTLISVASG-----------------------SSHGSGHHQDAN 183

Query: 181 ISNVGNNGGTAYTSLAHPQLNNHLHKLSRGGSGGNDGKIPIYGGQDDHIV---LHSKCSS 240
            +N+      + T + HP + N L +LS  G   +  K+       D  V      +CS 
Sbjct: 184 NNNIEGEEEDSTTVIGHPHVINQLQQLSIDGK--HHAKMVFRANSMDESVGPYTKEECSP 243

Query: 241 QSNVPRIFEIYKDIASHRQGNSSITSYFTRLKTLWDELETYNDLSQCCS-------SGEH 300
           QSN  RI EIYKDIASHRQGNSSITSYFT+L+TLW+ELETY+DL QCCS         + 
Sbjct: 244 QSNAERILEIYKDIASHRQGNSSITSYFTKLETLWEELETYSDLPQCCSYSATDQKPSKL 303

Query: 301 VEREKVMQFLVGLNDPYSTICHQILLIRPFPTVEKAYSIVIREE 319
           VEREKVMQFLVGLND YSTIC QILLIRPFPTVEKAYSI+I +E
Sbjct: 304 VEREKVMQFLVGLNDSYSTICSQILLIRPFPTVEKAYSIIIMQE 313

[Close]

BLAST of Moc03g28950 vs. ExPASy TrEMBL
Match: A0A6J1C6T8 (uncharacterized protein LOC111008934 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111008934 PE=4 SV=1)

HSP 1 Score: 657.9 bits (1696), Expect = 2.2e-185
Identity = 323/323 (100.00%), Postives = 323/323 (100.00%), Query Frame = 0


Query: 1   MTKRGLISPPRAFSGPNNAAANPPMRPNYRMSPPPRPTTVVNPSEQMFYEHWLKATSSSN 60
           MTKRGLISPPRAFSGPNNAAANPPMRPNYRMSPPPRPTTVVNPSEQMFYEHWLKATSSSN
Sbjct: 1   MTKRGLISPPRAFSGPNNAAANPPMRPNYRMSPPPRPTTVVNPSEQMFYEHWLKATSSSN 60

Query: 61  AIRATHIAPPNPYDLQNHQKKLDHNNNNNSSTKTTAPPPTRHQRLRNGATLISNNTAPRP 120
           AIRATHIAPPNPYDLQNHQKKLDHNNNNNSSTKTTAPPPTRHQRLRNGATLISNNTAPRP
Sbjct: 61  AIRATHIAPPNPYDLQNHQKKLDHNNNNNSSTKTTAPPPTRHQRLRNGATLISNNTAPRP 120

Query: 121 KGPTASGSRSDPLDANLIAPKFSDSPNNSSPNHLSIHGSGQRQNISNVGNNGGTAYTSLA 180
           KGPTASGSRSDPLDANLIAPKFSDSPNNSSPNHLSIHGSGQRQNISNVGNNGGTAYTSLA
Sbjct: 121 KGPTASGSRSDPLDANLIAPKFSDSPNNSSPNHLSIHGSGQRQNISNVGNNGGTAYTSLA 180

Query: 181 HPQLNNHLHKLSRGGSGGNDGKIPIYGGQDDHIVLHSKCSSQSNVPRIFEIYKDIASHRQ 240
           HPQLNNHLHKLSRGGSGGNDGKIPIYGGQDDHIVLHSKCSSQSNVPRIFEIYKDIASHRQ
Sbjct: 181 HPQLNNHLHKLSRGGSGGNDGKIPIYGGQDDHIVLHSKCSSQSNVPRIFEIYKDIASHRQ 240

Query: 241 GNSSITSYFTRLKTLWDELETYNDLSQCCSSGEHVEREKVMQFLVGLNDPYSTICHQILL 300
           GNSSITSYFTRLKTLWDELETYNDLSQCCSSGEHVEREKVMQFLVGLNDPYSTICHQILL
Sbjct: 241 GNSSITSYFTRLKTLWDELETYNDLSQCCSSGEHVEREKVMQFLVGLNDPYSTICHQILL 300

Query: 301 IRPFPTVEKAYSIVIREEKRMWS 324
           IRPFPTVEKAYSIVIREEKRMWS
Sbjct: 301 IRPFPTVEKAYSIVIREEKRMWS 323

[Close]

BLAST of Moc03g28950 vs. ExPASy TrEMBL
Match: A0A6J1C6U3 (uncharacterized protein LOC111008934 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111008934 PE=4 SV=1)

HSP 1 Score: 650.2 bits (1676), Expect = 4.5e-183
Identity = 323/332 (97.29%), Postives = 323/332 (97.29%), Query Frame = 0


Query: 1   MTKRGLISPPRAFSGPNNAAANPPMRPNYRMSPPPRPTTVVNPSEQMFYEHWLKATSSSN 60
           MTKRGLISPPRAFSGPNNAAANPPMRPNYRMSPPPRPTTVVNPSEQMFYEHWLKATSSSN
Sbjct: 1   MTKRGLISPPRAFSGPNNAAANPPMRPNYRMSPPPRPTTVVNPSEQMFYEHWLKATSSSN 60

Query: 61  AIRATHIAPPNPYDLQNHQKKLDHNNNNNSSTKTTAPPPTRHQRLRNGATLISNNTAPRP 120
           AIRATHIAPPNPYDLQNHQKKLDHNNNNNSSTKTTAPPPTRHQRLRNGATLISNNTAPRP
Sbjct: 61  AIRATHIAPPNPYDLQNHQKKLDHNNNNNSSTKTTAPPPTRHQRLRNGATLISNNTAPRP 120

Query: 121 KGPTASGSRSDPLDANLIAPKFSDSPNNSSPNHLSIHGSGQRQNISNVGNNGGTAYTSLA 180
           KGPTASGSRSDPLDANLIAPKFSDSPNNSSPNHLSIHGSGQRQNISNVGNNGGTAYTSLA
Sbjct: 121 KGPTASGSRSDPLDANLIAPKFSDSPNNSSPNHLSIHGSGQRQNISNVGNNGGTAYTSLA 180

Query: 181 HPQLNNHLHKLSRGGSGGND---------GKIPIYGGQDDHIVLHSKCSSQSNVPRIFEI 240
           HPQLNNHLHKLSRGGSGGND         GKIPIYGGQDDHIVLHSKCSSQSNVPRIFEI
Sbjct: 181 HPQLNNHLHKLSRGGSGGNDAYPEIPIYVGKIPIYGGQDDHIVLHSKCSSQSNVPRIFEI 240

Query: 241 YKDIASHRQGNSSITSYFTRLKTLWDELETYNDLSQCCSSGEHVEREKVMQFLVGLNDPY 300
           YKDIASHRQGNSSITSYFTRLKTLWDELETYNDLSQCCSSGEHVEREKVMQFLVGLNDPY
Sbjct: 241 YKDIASHRQGNSSITSYFTRLKTLWDELETYNDLSQCCSSGEHVEREKVMQFLVGLNDPY 300

Query: 301 STICHQILLIRPFPTVEKAYSIVIREEKRMWS 324
           STICHQILLIRPFPTVEKAYSIVIREEKRMWS
Sbjct: 301 STICHQILLIRPFPTVEKAYSIVIREEKRMWS 332

[Close]

BLAST of Moc03g28950 vs. ExPASy TrEMBL
Match: A0A6J1C6Z1 (uncharacterized protein LOC111008978 OS=Momordica charantia OX=3673 GN=LOC111008978 PE=4 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 2.0e-69
Identity = 185/363 (50.96%), Postives = 223/363 (61.43%), Query Frame = 0


Query: 4   RGLISPPRAFSGPNNAAANPPMRP-----NYRMSPPPRPT--TVVNPSEQMFYEHWLKAT 63
           RGLISPPR+F+G        P RP     ++ MS   RPT  +V +PS+        +  
Sbjct: 3   RGLISPPRSFAG-------SPSRPLADDLHFYMSQSRRPTASSVADPSDH-------RTP 62

Query: 64  SSSNAIRATHIAPPNPYDLQNHQKKLDHNNNNNSSTKTTAPPPTRHQRL--RN------- 123
             +   +  H A  N  DLQN+ KKLD  NNNNSSTKTTA   +    +  RN       
Sbjct: 63  PRTRTSQRRHTAEKNADDLQNYLKKLD-RNNNNSSTKTTAKISSSRPSISPRNGLEIEQP 122

Query: 124 -GATLISNNTAPRPKGPTASGS----RSDPLDANLIAPKFSDSPNNSSPNHLSIHGSGQR 183
            G T IS+N AP+PK   A  S     S   +ANLIAPKF DSP+NSSP HLSIHGSGQR
Sbjct: 123 RGPTPISHNAAPKPKPAPAIDSPAPDASTANNANLIAPKFFDSPHNSSPTHLSIHGSGQR 182

Query: 184 QNISNVGNNGGTAYTSLAHPQLNNHLHKLSRGGSGGND-----GKIPIYGGQD-DHIVLH 243
           QNI+NVG+NGG ++T LAHPQLN++LHKLS  G    +     G+IPIY G+   +IVL 
Sbjct: 183 QNINNVGSNGGASHTPLAHPQLNSNLHKLSGDGDACVEIPIYIGEIPIYVGKHVANIVLR 242

Query: 244 -------------SKCSSQSNVPRIFEIYKDIASHRQGNSSITSYFTRLKTLWDELETYN 303
                         + SSQSN   IF+IYK  ASHRQ +SS+TSYF +LK LWD+L  Y+
Sbjct: 243 ENSIYKPVGSNTKQEWSSQSNDSEIFQIYKGFASHRQKSSSVTSYFKKLKILWDQLRNYS 302

Query: 304 DLSQCCSSG------EHVEREKVMQFLVGLNDPYSTICHQILLIRPFPTVEKAYSIVIRE 321
           DL QC S G      EHVEREKV+QFLVGLND YSTI  QIL IRP PTVEKAY + I+E
Sbjct: 303 DLPQCYSLGAKQKLSEHVEREKVIQFLVGLNDSYSTIVSQILQIRPLPTVEKAYFLTIQE 350

[Close]

BLAST of Moc03g28950 vs. ExPASy TrEMBL
Match: A0A6J1C5Z8 (uncharacterized protein LOC111008588 OS=Momordica charantia OX=3673 GN=LOC111008588 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 2.7e-63
Identity = 183/372 (49.19%), Postives = 208/372 (55.91%), Query Frame = 0


Query: 1   MTKRGLISPPRAFSGP------NNAAANPPMRPNYRMSPPPRPTTVVNPSEQMFYEHWLK 60
           MT RGLISPPR+ S P      NN A NPP RPNY MSP  RPTT    +EQ   +   K
Sbjct: 47  MTLRGLISPPRSRSSPRDFRPHNNGAPNPPSRPNY-MSPRRRPTT----AEQQHTQTHRK 106

Query: 61  ATSSSNAIRATHIAP------------------PNPYDLQNHQKKLDHNNNNNSSTKTTA 120
              S+ A RAT  +P                  PNP DL N QKKLD            +
Sbjct: 107 --PSATATRATKKSPPRIRPSPKPTAPIVPSRRPNPNDLHN-QKKLDTKTTPKIGGAKPS 166

Query: 121 PPPTRHQRLRNGA------TLISNNTAPRPKG--PTASGSRSDPLDANLIAPKFSDSPNN 180
            P T+ QRLRNG       T IS NT P+PK     AS SRSD       +P  + SP  
Sbjct: 167 SPRTQPQRLRNGVEPPRGPTPISKNTTPKPKPAIAIASASRSD-------SPAANSSP-- 226

Query: 181 SSPNHLSIHGSGQRQNISNVGNNGGTAYTSLAHPQLNNHLHKLSRGGSGGNDGKIPIYGG 240
            S  HL   GS Q  ++ N     G  YT LA PQLNNHL +LS            I G 
Sbjct: 227 -SSKHLPSPGSAQHHDMKNHSPYSGGTYTPLADPQLNNHLQRLS------------IDGK 286

Query: 241 QDDHIVLHSKC------------SSQSNVPRIFEIYKDIASHRQGNSSITSYFTRLKTLW 300
               I+LH+              S QSN PRIF+IYKDIASHRQ NSS+TSYFT+LK LW
Sbjct: 287 DLASIILHANSIYESIGSDTMEESFQSNAPRIFQIYKDIASHRQENSSVTSYFTKLKILW 346

Query: 301 DELETY-NDLSQCCSSGE------HVEREKVMQFLVGLNDPYSTICHQILLIRPFPTVEK 322
           DELETY +D+ QCCS G       HVEREKVMQFL+GLN+ YSTIC QILLI+PFPT+EK
Sbjct: 347 DELETYSDDVPQCCSCGAMEKLSGHVEREKVMQFLMGLNNSYSTICPQILLIQPFPTMEK 388

[Close]

BLAST of Moc03g28950 vs. ExPASy TrEMBL
Match: A0A6J1C7L7 (uncharacterized protein LOC111008986 OS=Momordica charantia OX=3673 GN=LOC111008986 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 1.6e-50
Identity = 157/344 (45.64%), Postives = 187/344 (54.36%), Query Frame = 0


Query: 1   MTKRGLISPPRA-FS-----GPNNAAANPPMRPNYRMSPPPRPTT--VVNPSEQMFYEHW 60
           M  RGLISPP++ FS       NNAAANPP  PNY MS   R T   VVNP +Q      
Sbjct: 4   MRGRGLISPPKSRFSVTESDSQNNAAANPPSMPNY-MSATRRSTAARVVNPKQQQTTH-- 63

Query: 61  LKATSSSNAIRATHIAPPNPYDLQNHQKK------LDHNNNNNSSTKTTAPPPTRHQRLR 120
            K T  SNAIRAT  + P P  +   +++        + +N+NS+TK T    T     R
Sbjct: 64  TKPTFGSNAIRATKNSSPKPTPVVPSRRRPTWAPNNPNGHNDNSTTKLTIAKITTS---R 123

Query: 121 NGATLISNNTAPRPKGPTASGSRSDPLDANLIAPKFSDSPNNSSPNHLSIHGSGQRQ--N 180
           N      N    +P+GPT     S                        S HGSG  Q  N
Sbjct: 124 NSNV---NGVQQQPRGPTLISVASG-----------------------SSHGSGHHQDAN 183

Query: 181 ISNVGNNGGTAYTSLAHPQLNNHLHKLSRGGSGGNDGKIPIYGGQDDHIV---LHSKCSS 240
            +N+      + T + HP + N L +LS  G   +  K+       D  V      +CS 
Sbjct: 184 NNNIEGEEEDSTTVIGHPHVINQLQQLSIDGK--HHAKMVFRANSMDESVGPYTKEECSP 243

Query: 241 QSNVPRIFEIYKDIASHRQGNSSITSYFTRLKTLWDELETYNDLSQCCS-------SGEH 300
           QSN  RI EIYKDIASHRQGNSSITSYFT+L+TLW+ELETY+DL QCCS         + 
Sbjct: 244 QSNAERILEIYKDIASHRQGNSSITSYFTKLETLWEELETYSDLPQCCSYSATDQKPSKL 303

Query: 301 VEREKVMQFLVGLNDPYSTICHQILLIRPFPTVEKAYSIVIREE 319
           VEREKVMQFLVGLND YSTIC QILLIRPFPTVEKAYSI+I +E
Sbjct: 304 VEREKVMQFLVGLNDSYSTICSQILLIRPFPTVEKAYSIIIMQE 313

[Close]

BLAST of Moc03g28950 vs. TAIR 10
Match: AT1G21280.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 55.1 bits (131), Expect = 1.2e-07
Identity = 30/107 (28.04%), Postives = 57/107 (53.27%), Query Frame = 0


Query: 227 RIFEIYKDIASHRQGNSSITSYFTRLKTLWDELETYNDLSQCCSSG----------EHVE 286
           +I+++ + +A+ RQG  S+  YF +L  +W EL  Y  + +C   G          E  E
Sbjct: 126 KIYQLRRRLATLRQGGDSVEEYFGKLSKVWMELSEYAPIPECKCGGCNCECTKRAEEARE 185

Query: 287 REKVMQFLVG--LNDPYSTICHQILLIRPFPTVEKAYSIVIREEKRM 322
           +E+  +FL+G  LN  +  +  +I+  +P P++ +A+++V   E  M
Sbjct: 186 KEQRYEFLMGLKLNQGFEAVTTKIMFQKPPPSLHEAFAMVKDAESMM 232

The following BLAST results are available for this feature:

BLAST of Moc03g28950 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022137506.1	4.5e-185	100.00	uncharacterized protein LOC111008934 isoform X2 [Momordica charantia]	[more]
XP_022137505.1	9.3e-183	97.29	uncharacterized protein LOC111008934 isoform X1 [Momordica charantia]	[more]
XP_022137556.1	4.1e-69	50.96	uncharacterized protein LOC111008978 [Momordica charantia]	[more]
XP_022137024.1	5.7e-63	49.19	uncharacterized protein LOC111008588 [Momordica charantia] >XP_022137025.1 uncha...	[more]
XP_022137569.1	3.2e-50	45.64	uncharacterized protein LOC111008986 [Momordica charantia]	[more]

BLAST of Moc03g28950 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc03g28950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C6T8	2.2e-185	100.00	uncharacterized protein LOC111008934 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1C6U3	4.5e-183	97.29	uncharacterized protein LOC111008934 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1C6Z1	2.0e-69	50.96	uncharacterized protein LOC111008978 OS=Momordica charantia OX=3673 GN=LOC111008...	[more]
A0A6J1C5Z8	2.7e-63	49.19	uncharacterized protein LOC111008588 OS=Momordica charantia OX=3673 GN=LOC111008...	[more]
A0A6J1C7L7	1.6e-50	45.64	uncharacterized protein LOC111008986 OS=Momordica charantia OX=3673 GN=LOC111008...	[more]

BLAST of Moc03g28950 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G21280.1	1.2e-07	28.04	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Ha...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 233..289 e-value: 2.1E-5 score: 24.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..179
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..123
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 141..179
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 220..320
None	No IPR available	PANTHER	PTHR34222:SF6	OS02G0671800 PROTEIN	coord: 220..320

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc03g28950.1	Moc03g28950.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
biological_process	GO:0007127	meiosis I
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0043231	intracellular membrane-bounded organelle