Moc03g28800 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc03g28800
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Unknown protein
Location	chr3: 20651328 .. 20652430 (-)
RNA-Seq Expression	Moc03g28800
Synteny	Moc03g28800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCTTTTCGAGGCCATCAGAATTTTAGAGGTGGACACTTTAATCGAGGTCGTGGTAACTATCCAAGTACCCGTGGAAACAATGGCGGTAAAGGTAAGTATCCAAATTCTAATTCCTTCAGGCGAGGTAATTCTCAACCCTTTATTTCTGGGTGAACTGGTCATGGTTCACCTAATGGTAACTCTCTTCAAGGGGGACGATGTTTTCTGTCAAATTTGTAACAAGCTTGGTCACACTGCTCTTGATTATTATAACAGGATGAACTTCTCCTATCAAGGTCGTCATCCTCCGACTCAATTGGCTGCAACAGTAGATGCTATGTCTAATGGTTCTTCTACTAAATCTCCTTCCTTTTGGTTGACAGATGGTGGGTGTAATCAAACGGGTTGACTAATTTGAATCTTATGAATAATTATAATGGTGAGGAAGACACAGTTGCTATTGGAAATTGGCAAGCTATGGCAGTTACTAATACTAGCAGTGGTATTCTTCATATTTCTTCCTATGACTTTCACCTTTCCAATAATATCCTTCATTCTCCCACCGTTGCCTCAAATTCGCAATTTGTTTATCAATGTTGTCATGATAACAAATCGATCTGACCGACTAAAACCGACTGAATTGATGTCGGTCGGTCGATTTGATGAATAAATTGGTCAGAGTTGATTTTTTAATTACCGACATTCTTTAAAATTATTTTTTATCTTTATTCAAATTTATTACCTATTCCTTCAATCTCTTTTATTTCTCTTTTCGTTTCCTTATCCTTCATCCTTCACCTTGCCGCCAGAAACTTTCTTTTTCATCTTCGTCTTCCAGCCTTCTCATTCTTCTTCCTAATCTTCTTCTTCATTTTTATTTTTTCTGTCTCTAGAATCGCACAGAAACTTGCCTACATGTCTCCCTCCACTTCTTTTTCTTATGTGCAGAAGCCCCACCGTCGCTTCTCCACCGTCACTCAAGCATCTTAAAAAAAAGTACTACAGAAACCGACCGACCGAACCGACTAGTGGTCAGGAAAGTCGATTTCCATGATAGGAAACAGACTAGGTCAGTTTTCGACATCGGAGACAGCAAAAAACCGATCCTGACCGACTGA

mRNA sequence

ATGGCTGCTTTTCGAGGCCATCAGAATTTTAGAGGTGGACACTTTAATCGAGGTCGTGGTAACTATCCAAGTACCCGTGGAAACAATGGCGGTAAAGGTAAGTATCCAAATTCTAATTCCTTCAGGCGAGGTCGTCATCCTCCGACTCAATTGGCTGCAACAGTAGATGCTATGTCTAATGGTTCTTCTACTAAATCTCCTTCCTTTTGGTTGACAGATGAAGCCCCACCGTCGCTTCTCCACCGTCACTCAAGCATCTTAAAAAAAAGTACTACAGAAACCGACCGACCGAACCGACTAGTGGTCAGGAAAGTCGATTTCCATGATAGGAAACAGACTAGGTCAGTTTTCGACATCGGAGACAGCAAAAAACCGATCCTGACCGACTGA

Coding sequence (CDS)

ATGGCTGCTTTTCGAGGCCATCAGAATTTTAGAGGTGGACACTTTAATCGAGGTCGTGGTAACTATCCAAGTACCCGTGGAAACAATGGCGGTAAAGGTAAGTATCCAAATTCTAATTCCTTCAGGCGAGGTCGTCATCCTCCGACTCAATTGGCTGCAACAGTAGATGCTATGTCTAATGGTTCTTCTACTAAATCTCCTTCCTTTTGGTTGACAGATGAAGCCCCACCGTCGCTTCTCCACCGTCACTCAAGCATCTTAAAAAAAAGTACTACAGAAACCGACCGACCGAACCGACTAGTGGTCAGGAAAGTCGATTTCCATGATAGGAAACAGACTAGGTCAGTTTTCGACATCGGAGACAGCAAAAAACCGATCCTGACCGACTGA

Protein sequence

MAAFRGHQNFRGGHFNRGRGNYPSTRGNNGGKGKYPNSNSFRRGRHPPTQLAATVDAMSNGSSTKSPSFWLTDEAPPSLLHRHSSILKKSTTETDRPNRLVVRKVDFHDRKQTRSVFDIGDSKKPILTD

Homology

[Close]

BLAST of Moc03g28800 vs. NCBI nr
Match: XP_022137319.1 (uncharacterized protein LOC111008814 [Momordica charantia])

HSP 1 Score: 66.6 bits (161), Expect = 1.8e-07
Identity = 36/50 (72.00%), Postives = 39/50 (78.00%), Query Frame = 0


Query: 1  MAAFRGHQNFRGGHFNRGRGNYPSTRGNNGGKGKYPNSNSFRRGRHPPTQ 51
          MAAFRGHQNFRGGHFNRGRGNYPSTRGNNGGK  + +  S     +PP Q
Sbjct: 1  MAAFRGHQNFRGGHFNRGRGNYPSTRGNNGGKEAHISHPS-----NPPQQ 45

[Close]

BLAST of Moc03g28800 vs. ExPASy TrEMBL
Match: A0A6J1C6X1 (uncharacterized protein LOC111008814 OS=Momordica charantia OX=3673 GN=LOC111008814 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 8.5e-08
Identity = 36/50 (72.00%), Postives = 39/50 (78.00%), Query Frame = 0


Query: 1  MAAFRGHQNFRGGHFNRGRGNYPSTRGNNGGKGKYPNSNSFRRGRHPPTQ 51
          MAAFRGHQNFRGGHFNRGRGNYPSTRGNNGGK  + +  S     +PP Q
Sbjct: 1  MAAFRGHQNFRGGHFNRGRGNYPSTRGNNGGKEAHISHPS-----NPPQQ 45

The following BLAST results are available for this feature:

BLAST of Moc03g28800 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022137319.1	1.8e-07	72.00	uncharacterized protein LOC111008814 [Momordica charantia]	[more]

BLAST of Moc03g28800 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc03g28800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C6X1	8.5e-08	72.00	uncharacterized protein LOC111008814 OS=Momordica charantia OX=3673 GN=LOC111008...	[more]

BLAST of Moc03g28800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..75
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc03g28800.1	Moc03g28800.1	mRNA