Moc03g27780 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc03g27780
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Reverse transcriptase
Location	chr3: 19980649 .. 19981824 (+)
RNA-Seq Expression	Moc03g27780
Synteny	Moc03g27780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGGTTGAGACCCTAGAAAGCAAAGCTACGCGTCCTGGTAGCTTCGAACGTGGAGATAATTCCACGAACCCAAACACACAGATAGAAGTACGTATGGGTGAGTTAAACAACTCGCATTCGGCAATGATGCAATTGTTTAACGAAATGACAGAAGACTTCAAAGTAACCATCGACACCTTCCGAGCTGAGATGACTGAAATAAGCACTAGAGTGAACCTAACCATGCGAGCCGTGGGAAATAAGGCTCCTAACCAAGCGAACATGGGGTTCAACAAGTTGAAGGTCCCAGAGCCCAAACCATTTAATGGCAATAGAGACGCAAAAGATCTCGAGAACTTCATGTTCGACGTAGAACAGTACTTCAAGGATACGGGGACAACGTCAGAAGAGATGAAAGTGACTTTGGCCACCATACATCTTACTGATGATGCAAAGCTGTGGTGGAGATCTAAAGTCAACGACATTCAGAATGGTCGATGCACGATCAATAGCTGGGATGATCTGAAGAAAGAATTGAGGAGTCAGTTCTTCCTCGACAATGTCGAGTTCATGGCTAGAAGGAAGCTACGTGAACTCCGACACACTGGAACAATCCGGGACTACGTGAAACAATTCTCTGCCGTGATGCTGGATATTCGCGACATGTCAGAGAAAGACAAGGTGTTCGTCTTTATCGAAGGATTGAAATCGTGGGCCAGAACCAAGCTGTATGAACAAAGAGTACAAGACCTTGCCACCGCCATGGCCGCTGCCAAAAGATTGCTAGACTATAGCAGTGAGCCATCCCACCCGAAAAAGAATGCTACAAACCCCACTGGGGGAAACAAGACGTTCACACCCTTTACCCCAAAGAGTGGGGGAGCTGACAAGAGACCTCAAGGCCCGAATCCCGGTCCTTCCCGAGGACCCTATCCACAAAGTCAAAACGCTCAAAGGTCGATATCATGCTTCTTGTGCAAGGGTCCTCACCGGGTAGCTGAATGCCCGCACCGAGCTGCCCTTACTGCCCTTCAAGCATTCGTTCAGTCGTGCAATGAACCTGAAGTTGAAACGGATTGTGAGAAGGAAGAAGACGAAGAAACACCTAGAATGGGGGCGATAAATTCCTATCTGCCATTCAAAAGAGGGTCAATGGACCCAAAGGAACGTCCGAAAAGGGGTTTATGTTTGTAG

mRNA sequence

ATGAGGGTTGAGACCCTAGAAAGCAAAGCTACGCGTCCTGGTAGCTTCGAACGTGGAGATAATTCCACGAACCCAAACACACAGATAGAAGTACGTATGGGTGAGTTAAACAACTCGCATTCGGCAATGATGCAATTGTTTAACGAAATGACAGAAGACTTCAAAGTAACCATCGACACCTTCCGAGCTGAGATGACTGAAATAAGCACTAGAGTGAACCTAACCATGCGAGCCGTGGGAAATAAGGCTCCTAACCAAGCGAACATGGGGTTCAACAAGTTGAAGGTCCCAGAGCCCAAACCATTTAATGGCAATAGAGACGCAAAAGATCTCGAGAACTTCATGTTCGACGTAGAACAGTACTTCAAGGATACGGGGACAACGTCAGAAGAGATGAAAGTGACTTTGGCCACCATACATCTTACTGATGATGCAAAGCTGTGGTGGAGATCTAAAGTCAACGACATTCAGAATGGTCGATGCACGATCAATAGCTGGGATGATCTGAAGAAAGAATTGAGGAGTCAGTTCTTCCTCGACAATGTCGAGTTCATGGCTAGAAGGAAGCTACGTGAACTCCGACACACTGGAACAATCCGGGACTACGTGAAACAATTCTCTGCCGTGATGCTGGATATTCGCGACATGTCAGAGAAAGACAAGGTGTTCGTCTTTATCGAAGGATTGAAATCGTGGGCCAGAACCAAGCTGTATGAACAAAGAGTACAAGACCTTGCCACCGCCATGGCCGCTGCCAAAAGATTGCTAGACTATAGCAGTGAGCCATCCCACCCGAAAAAGAATGCTACAAACCCCACTGGGGGAAACAAGACGTTCACACCCTTTACCCCAAAGAGTGGGGGAGCTGACAAGAGACCTCAAGGCCCGAATCCCGGTCCTTCCCGAGGACCCTATCCACAAAGTCAAAACGCTCAAAGGTCGATATCATGCTTCTTGTGCAAGGGTCCTCACCGGGTAGCTGAATGCCCGCACCGAGCTGCCCTTACTGCCCTTCAAGCATTCGTTCAGTCGTGCAATGAACCTGAAGTTGAAACGGATTGTGAGAAGGAAGAAGACGAAGAAACACCTAGAATGGGGGCGATAAATTCCTATCTGCCATTCAAAAGAGGGTCAATGGACCCAAAGGAACGTCCGAAAAGGGGTTTATGTTTGTAG

Coding sequence (CDS)

ATGAGGGTTGAGACCCTAGAAAGCAAAGCTACGCGTCCTGGTAGCTTCGAACGTGGAGATAATTCCACGAACCCAAACACACAGATAGAAGTACGTATGGGTGAGTTAAACAACTCGCATTCGGCAATGATGCAATTGTTTAACGAAATGACAGAAGACTTCAAAGTAACCATCGACACCTTCCGAGCTGAGATGACTGAAATAAGCACTAGAGTGAACCTAACCATGCGAGCCGTGGGAAATAAGGCTCCTAACCAAGCGAACATGGGGTTCAACAAGTTGAAGGTCCCAGAGCCCAAACCATTTAATGGCAATAGAGACGCAAAAGATCTCGAGAACTTCATGTTCGACGTAGAACAGTACTTCAAGGATACGGGGACAACGTCAGAAGAGATGAAAGTGACTTTGGCCACCATACATCTTACTGATGATGCAAAGCTGTGGTGGAGATCTAAAGTCAACGACATTCAGAATGGTCGATGCACGATCAATAGCTGGGATGATCTGAAGAAAGAATTGAGGAGTCAGTTCTTCCTCGACAATGTCGAGTTCATGGCTAGAAGGAAGCTACGTGAACTCCGACACACTGGAACAATCCGGGACTACGTGAAACAATTCTCTGCCGTGATGCTGGATATTCGCGACATGTCAGAGAAAGACAAGGTGTTCGTCTTTATCGAAGGATTGAAATCGTGGGCCAGAACCAAGCTGTATGAACAAAGAGTACAAGACCTTGCCACCGCCATGGCCGCTGCCAAAAGATTGCTAGACTATAGCAGTGAGCCATCCCACCCGAAAAAGAATGCTACAAACCCCACTGGGGGAAACAAGACGTTCACACCCTTTACCCCAAAGAGTGGGGGAGCTGACAAGAGACCTCAAGGCCCGAATCCCGGTCCTTCCCGAGGACCCTATCCACAAAGTCAAAACGCTCAAAGGTCGATATCATGCTTCTTGTGCAAGGGTCCTCACCGGGTAGCTGAATGCCCGCACCGAGCTGCCCTTACTGCCCTTCAAGCATTCGTTCAGTCGTGCAATGAACCTGAAGTTGAAACGGATTGTGAGAAGGAAGAAGACGAAGAAACACCTAGAATGGGGGCGATAAATTCCTATCTGCCATTCAAAAGAGGGTCAATGGACCCAAAGGAACGTCCGAAAAGGGGTTTATGTTTGTAG

Protein sequence

MRVETLESKATRPGSFERGDNSTNPNTQIEVRMGELNNSHSAMMQLFNEMTEDFKVTIDTFRAEMTEISTRVNLTMRAVGNKAPNQANMGFNKLKVPEPKPFNGNRDAKDLENFMFDVEQYFKDTGTTSEEMKVTLATIHLTDDAKLWWRSKVNDIQNGRCTINSWDDLKKELRSQFFLDNVEFMARRKLRELRHTGTIRDYVKQFSAVMLDIRDMSEKDKVFVFIEGLKSWARTKLYEQRVQDLATAMAAAKRLLDYSSEPSHPKKNATNPTGGNKTFTPFTPKSGGADKRPQGPNPGPSRGPYPQSQNAQRSISCFLCKGPHRVAECPHRAALTALQAFVQSCNEPEVETDCEKEEDEETPRMGAINSYLPFKRGSMDPKERPKRGLCL

Homology

[Close]

BLAST of Moc03g27780 vs. NCBI nr
Match: XP_022150099.1 (uncharacterized protein LOC111018360 [Momordica charantia])

HSP 1 Score: 703.0 bits (1813), Expect = 1.5e-198
Identity = 352/389 (90.49%), Postives = 366/389 (94.09%), Query Frame = 0


Query: 1   MRVETLESKATRPGSFERGDNSTNPNTQIEVRMGELNNSHSAMMQLFNEMTEDFKVTIDT 60
           MRVETLESKATRPGSFERGD+STNPNTQIEVRMGELNNSHSAMMQLFNEMTEDFKVTIDT
Sbjct: 66  MRVETLESKATRPGSFERGDSSTNPNTQIEVRMGELNNSHSAMMQLFNEMTEDFKVTIDT 125

Query: 61  FRAEMTEISTRVNLTMRAVGNKAPNQANMGFNKLKVPEPKPFNGNRDAKDLENFMFDVEQ 120
            RAEMTEISTRVNLTMRAVGN+APNQANMGFNKLKVPEPKPFNGNRDAKDLENF+FDVEQ
Sbjct: 126 LRAEMTEISTRVNLTMRAVGNQAPNQANMGFNKLKVPEPKPFNGNRDAKDLENFLFDVEQ 185

Query: 121 YFKDTGTTSEEMKVTLATIHLTDDAKLWWRSKVNDIQNGRCTINSWDDLKKELRSQFFLD 180
           YFK TGTTSEEMKVTLAT+HLTDDAKLWWRSKVNDIQNGRCTINSWDDLKKELR QFF D
Sbjct: 186 YFKATGTTSEEMKVTLATMHLTDDAKLWWRSKVNDIQNGRCTINSWDDLKKELRGQFFPD 245

Query: 181 NVEFMARRKLRELRHTGTIRDYVKQFSAVMLDIRDMSEKDKVFVFIEGLKSWARTKLYEQ 240
           NVEFMARRKLRELRHTGTIRDYVKQFSAVM+DIRDMSEKDKVFVFI+GLK WARTKLYEQ
Sbjct: 246 NVEFMARRKLRELRHTGTIRDYVKQFSAVMMDIRDMSEKDKVFVFIZGLKLWARTKLYEQ 305

Query: 241 RVQDLATAMAAAKRLLDYSSEPSHPKKNATNPTGGNKTFTPFTPKSGGADKRPQGPNPGP 300
           RVQDLATAMAAA+RLLDY+SEPSHPKKNATNPTGGNKTF PFTPKSGGADKRPQGPNPGP
Sbjct: 306 RVQDLATAMAAAERLLDYNSEPSHPKKNATNPTGGNKTFKPFTPKSGGADKRPQGPNPGP 365

Query: 301 SRGPYPQSQNAQRSISCFLCKGPHRVAECPHRAALTALQAFVQSCNEPEVETDCEKEEDE 360
           SRGPYPQSQNAQR +S FLCKGPHRVAECPHRAALTALQA VQSCNEPEVETDCEKEEDE
Sbjct: 366 SRGPYPQSQNAQRLMSYFLCKGPHRVAECPHRAALTALQASVQSCNEPEVETDCEKEEDE 425

Query: 361 ETPRMGAINSYLPFKRGSMDPKERPKRGL 390
           ETPRM A+      ++    PK   ++GL
Sbjct: 426 ETPRMRALKFLSAIQKRVNGPKGTSEKGL 454

[Close]

BLAST of Moc03g27780 vs. NCBI nr
Match: XP_022154605.1 (uncharacterized protein LOC111021829 [Momordica charantia])

HSP 1 Score: 687.2 bits (1772), Expect = 8.3e-194
Identity = 345/389 (88.69%), Postives = 357/389 (91.77%), Query Frame = 0


Query: 1   MRVETLESKATRPGSFERGDNSTNPNTQIEVRMGELNNSHSAMMQLFNEMTEDFKVTIDT 60
           MRVET ESKATRPGSFERGD+STNPNTQIEVRMGELNNSHS MMQLFNEMTEDFKVTIDT
Sbjct: 66  MRVETXESKATRPGSFERGDSSTNPNTQIEVRMGELNNSHSTMMQLFNEMTEDFKVTIDT 125

Query: 61  FRAEMTEISTRVNLTMRAVGNKAPNQANMGFNKLKVPEPKPFNGNRDAKDLENFMFDVEQ 120
            RAEMTEISTRVNLTMRAVGN+APNQ NMGFNKLKVPEPKPFNGNR  KDLENF FDVEQ
Sbjct: 126 LRAEMTEISTRVNLTMRAVGNQAPNQXNMGFNKLKVPEPKPFNGNRXXKDLENFXFDVEQ 185

Query: 121 YFKDTGTTSEEMKVTLATIHLTDDAKLWWRSKVNDIQNGRCTINSWDDLKKELRSQFFLD 180
           YFK TGT SE MKVTLAT+HLTDDAKLWWRSKVNDIQNGRCTINSWDDLKKELR QFFLD
Sbjct: 186 YFKXTGTXSEXMKVTLATMHLTDDAKLWWRSKVNDIQNGRCTINSWDDLKKELRGQFFLD 245

Query: 181 NVEFMARRKLRELRHTGTIRDYVKQFSAVMLDIRDMSEKDKVFVFIEGLKSWARTKLYEQ 240
           NVEFMARRKLRELRHTGTIRDYVKQFSAVMLDIRDMSEKDKVFVFIEGLK WARTKLYEQ
Sbjct: 246 NVEFMARRKLRELRHTGTIRDYVKQFSAVMLDIRDMSEKDKVFVFIEGLKLWARTKLYEQ 305

Query: 241 RVQDLATAMAAAKRLLDYSSEPSHPKKNATNPTGGNKTFTPFTPKSGGADKRPQGPNPGP 300
           RVQDLATAMA+A+RLLDYSSEPSHPKKNATNPTGGNKTF PFTPK GGADKRP GPNPGP
Sbjct: 306 RVQDLATAMASAERLLDYSSEPSHPKKNATNPTGGNKTFKPFTPKIGGADKRPLGPNPGP 365

Query: 301 SRGPYPQSQNAQRSISCFLCKGPHRVAECPHRAALTALQAFVQSCNEPEVETDCEKEEDE 360
           SRGPYPQSQNAQR  SCFLC+GPH+VAECPHRAALTALQA VQSCNEPEV TDCEKEEDE
Sbjct: 366 SRGPYPQSQNAQRPKSCFLCRGPHQVAECPHRAALTALQASVQSCNEPEVGTDCEKEEDE 425

Query: 361 ETPRMGAINSYLPFKRGSMDPKERPKRGL 390
           ETPRMGA+      ++    PK   ++GL
Sbjct: 426 ETPRMGALKFLSAIQKRVNGPKGTSEKGL 454

[Close]

BLAST of Moc03g27780 vs. NCBI nr
Match: KAA0035456.1 (uncharacterized protein E6C27_scaffold285G00960 [Cucumis melo var. makuwa])

HSP 1 Score: 378.6 bits (971), Expect = 6.3e-101
Identity = 197/399 (49.37%), Postives = 280/399 (70.18%), Query Frame = 0


Query: 2   RVETLES--KATRPGSFERGDNSTNPNTQIEVRMGELNNSHSAMMQLFNEMTEDFKVTID 61
           RV+ LE+  K  R  ++ERGD+ST     IE R+ EL++S   ++++ N M+EDF+ T+D
Sbjct: 67  RVDALETTIKIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSEDFRATLD 126

Query: 62  TFRAEMTEISTRVNLTMRAVGNKAPNQANMGFNKLKVPEPKPFNGNRDAKDLENFMFDVE 121
             R E+ +++ R++LTMRA+ N AP    +  +++K+PEPKPF G RDAK LEN++FD+E
Sbjct: 127 VVRNEIVDVNARLSLTMRAMANHAPAGGAIPVSRVKIPEPKPFCGARDAKALENYIFDLE 186

Query: 122 QYFKDTGTTSEEMKVTLATIHLTDDAKLWWRSKVNDIQNGRCTINSWDDLKKELRSQFFL 181
           QYF+ T T +EE KVTLAT+HL++DAKLWWRS+  DIQ GRCTI++WD LK+ELRSQFF 
Sbjct: 187 QYFRATNTVTEEAKVTLATMHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKRELRSQFFP 246

Query: 182 DNVEFMARRKLRELRHTGTIRDYVKQFSAVMLDIRDMSEKDKVFVFIEGLKSWARTKLYE 241
           +NVE +ARRKLREL+HTG+IRDYVKQF+ +MLDIRDMSEKDKVF F+EGLK WA+TKLYE
Sbjct: 247 ENVEILARRKLRELKHTGSIRDYVKQFAGLMLDIRDMSEKDKVFCFVEGLKLWAKTKLYE 306

Query: 242 QRVQDLATAMAAAKRLLDYSSEPSHPKKNATNPTGGNKTFTPFTPKSGGADKRPQG---- 301
           QRVQDL +A AAA+RL D S++    +++ ++ +GG++   P +PK+ G D+R  G    
Sbjct: 307 QRVQDLTSAYAAAERLFDLSNDSQDTRRHPSSSSGGSRNNRPSSPKTTGRDRRFNGDRRS 366

Query: 302 --PNPGPSRGPYPQSQNAQRSISCFLCKGPHRVAECPHRAALTALQAFVQSCN---EPEV 361
              N G S         + R +SCF+CKGPH   ECP++ A +A QA + S +   + ++
Sbjct: 367 NQSNTGNSWRGSSNQNLSNRPLSCFICKGPHMARECPNKTAFSAFQASLASDSDNQQSQI 426

Query: 362 ETDCEKEEDEETPRMGAINSYLPFKRGSMDPKERPKRGL 390
           E + ++ E+ + PRMGA+      ++   +     +RGL
Sbjct: 427 EREVDQTEEVDNPRMGALKFLSSLQKKVGETNTLVERGL 465

[Close]

BLAST of Moc03g27780 vs. NCBI nr
Match: TYK25585.1 (uncharacterized protein E5676_scaffold352G007440 [Cucumis melo var. makuwa])

HSP 1 Score: 375.9 bits (964), Expect = 4.1e-100
Identity = 195/399 (48.87%), Postives = 278/399 (69.67%), Query Frame = 0


Query: 2   RVETLESKAT--RPGSFERGDNSTNPNTQIEVRMGELNNSHSAMMQLFNEMTEDFKVTID 61
           RV+ LE+     R  ++ERGD+ST     IE R+ EL++S   ++++ N M+EDF+ T+D
Sbjct: 67  RVDALETTVNIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSEDFRATLD 126

Query: 62  TFRAEMTEISTRVNLTMRAVGNKAPNQANMGFNKLKVPEPKPFNGNRDAKDLENFMFDVE 121
             R E+ +++ R++LTMRA+ N+AP    +  +++K+PEPKPF G RDAK LEN++FD+E
Sbjct: 127 VVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCGARDAKALENYIFDLE 186

Query: 122 QYFKDTGTTSEEMKVTLATIHLTDDAKLWWRSKVNDIQNGRCTINSWDDLKKELRSQFFL 181
           QYF+ T T +EE KVTLAT+HL++DAKLWWRS+  DIQ GRCTI++WD LK+ELRSQFF 
Sbjct: 187 QYFRATNTVTEEAKVTLATMHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKRELRSQFFP 246

Query: 182 DNVEFMARRKLRELRHTGTIRDYVKQFSAVMLDIRDMSEKDKVFVFIEGLKSWARTKLYE 241
           +NVE +ARRKLREL+HTG+IR+YVKQF+ +MLDIRDMSEKDKVF F+EGLK WA+TKLYE
Sbjct: 247 ENVEILARRKLRELKHTGSIREYVKQFAGLMLDIRDMSEKDKVFCFVEGLKPWAKTKLYE 306

Query: 242 QRVQDLATAMAAAKRLLDYSSEPSHPKKNATNPTGGNKTFTPFTPKSGGADKRPQG---- 301
           QRVQDL +A AAA+RL D S++    +++ ++ +GG++   P +PK+ G D+R  G    
Sbjct: 307 QRVQDLTSAYAAAERLFDLSNDSQDTRRHPSSSSGGSRNNRPSSPKTTGGDRRFNGDRRS 366

Query: 302 --PNPGPSRGPYPQSQNAQRSISCFLCKGPHRVAECPHRAALTALQAFVQSCN---EPEV 361
              N G S         + R +SCF+CKGPH   ECP++ A  A QA + S +   + + 
Sbjct: 367 HQSNTGNSWRGSSNQNLSNRPLSCFICKGPHMARECPNKTAFNAFQASLASDSDNQQSQT 426

Query: 362 ETDCEKEEDEETPRMGAINSYLPFKRGSMDPKERPKRGL 390
           E + ++ E+ + PRMGA+      ++   +     +RGL
Sbjct: 427 EREVDQTEEVDNPRMGALKFLSSLQKKVGETNTPVERGL 465

[Close]

BLAST of Moc03g27780 vs. NCBI nr
Match: KAA0053339.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 375.6 bits (963), Expect = 5.4e-100
Identity = 195/399 (48.87%), Postives = 277/399 (69.42%), Query Frame = 0


Query: 2   RVETLESKAT--RPGSFERGDNSTNPNTQIEVRMGELNNSHSAMMQLFNEMTEDFKVTID 61
           RV+ LE+     R  ++ERGD+ST     IE R+ EL++S   ++++ N M+EDF+ T+D
Sbjct: 67  RVDALETTVNIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSEDFRATLD 126

Query: 62  TFRAEMTEISTRVNLTMRAVGNKAPNQANMGFNKLKVPEPKPFNGNRDAKDLENFMFDVE 121
             R E+ +++ R++LTMRA+ N+AP    +  +++K+PEPKPF G RDAK LEN++FD+E
Sbjct: 127 VVRNEIADVNARLSLTMRAMANQAPTGGAIPVSRVKIPEPKPFCGARDAKALENYIFDLE 186

Query: 122 QYFKDTGTTSEEMKVTLATIHLTDDAKLWWRSKVNDIQNGRCTINSWDDLKKELRSQFFL 181
           QYF+ T T +EE KVTLAT+HL++DAKLWWRS+  DIQ GRCTI++WD LK+ELRSQFF 
Sbjct: 187 QYFRATNTVTEEAKVTLATMHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKRELRSQFFP 246

Query: 182 DNVEFMARRKLRELRHTGTIRDYVKQFSAVMLDIRDMSEKDKVFVFIEGLKSWARTKLYE 241
           +NVE +ARRKLREL+HTG+IR+YVKQF+ +MLDIRDMSEKDKVF F+EGLK WA+TKLYE
Sbjct: 247 ENVEILARRKLRELKHTGSIREYVKQFAGLMLDIRDMSEKDKVFCFVEGLKPWAKTKLYE 306

Query: 242 QRVQDLATAMAAAKRLLDYSSEPSHPKKNATNPTGGNKTFTPFTPKSGGADKRPQG---- 301
           QRVQDL +A AAA+RL D S++    +++ ++ +GG++   P +PK+ G D+R  G    
Sbjct: 307 QRVQDLTSAYAAAERLFDLSNDSQDTRRHPSSSSGGSRNNRPSSPKTTGGDRRFSGDRRS 366

Query: 302 --PNPGPSRGPYPQSQNAQRSISCFLCKGPHRVAECPHRAALTALQAFVQSCN---EPEV 361
              N G S         + R +SCF+CKGPH   ECP++ A  A QA + S +   + + 
Sbjct: 367 HQSNTGNSWRGSSNQNLSNRPLSCFICKGPHMARECPNKTAFNAFQASLTSDSDNQQSQT 426

Query: 362 ETDCEKEEDEETPRMGAINSYLPFKRGSMDPKERPKRGL 390
           E +  + E+ + PRMGA+      ++   +     +RGL
Sbjct: 427 EGEVNQTEEVDNPRMGALKFLSSLQKKVGETNTPVERGL 465

[Close]

BLAST of Moc03g27780 vs. ExPASy TrEMBL
Match: A0A6J1D906 (Reverse transcriptase OS=Momordica charantia OX=3673 GN=LOC111018360 PE=4 SV=1)

HSP 1 Score: 703.4 bits (1814), Expect = 5.4e-199
Identity = 353/389 (90.75%), Postives = 366/389 (94.09%), Query Frame = 0


Query: 1   MRVETLESKATRPGSFERGDNSTNPNTQIEVRMGELNNSHSAMMQLFNEMTEDFKVTIDT 60
           MRVETLESKATRPGSFERGD+STNPNTQIEVRMGELNNSHSAMMQLFNEMTEDFKVTIDT
Sbjct: 66  MRVETLESKATRPGSFERGDSSTNPNTQIEVRMGELNNSHSAMMQLFNEMTEDFKVTIDT 125

Query: 61  FRAEMTEISTRVNLTMRAVGNKAPNQANMGFNKLKVPEPKPFNGNRDAKDLENFMFDVEQ 120
            RAEMTEISTRVNLTMRAVGN+APNQANMGFNKLKVPEPKPFNGNRDAKDLENF+FDVEQ
Sbjct: 126 LRAEMTEISTRVNLTMRAVGNQAPNQANMGFNKLKVPEPKPFNGNRDAKDLENFLFDVEQ 185

Query: 121 YFKDTGTTSEEMKVTLATIHLTDDAKLWWRSKVNDIQNGRCTINSWDDLKKELRSQFFLD 180
           YFK TGTTSEEMKVTLAT+HLTDDAKLWWRSKVNDIQNGRCTINSWDDLKKELR QFF D
Sbjct: 186 YFKATGTTSEEMKVTLATMHLTDDAKLWWRSKVNDIQNGRCTINSWDDLKKELRGQFFPD 245

Query: 181 NVEFMARRKLRELRHTGTIRDYVKQFSAVMLDIRDMSEKDKVFVFIEGLKSWARTKLYEQ 240
           NVEFMARRKLRELRHTGTIRDYVKQFSAVM+DIRDMSEKDKVFVFIEGLK WARTKLYEQ
Sbjct: 246 NVEFMARRKLRELRHTGTIRDYVKQFSAVMMDIRDMSEKDKVFVFIEGLKLWARTKLYEQ 305

Query: 241 RVQDLATAMAAAKRLLDYSSEPSHPKKNATNPTGGNKTFTPFTPKSGGADKRPQGPNPGP 300
           RVQDLATAMAAA+RLLDY+SEPSHPKKNATNPTGGNKTF PFTPKSGGADKRPQGPNPGP
Sbjct: 306 RVQDLATAMAAAERLLDYNSEPSHPKKNATNPTGGNKTFKPFTPKSGGADKRPQGPNPGP 365

Query: 301 SRGPYPQSQNAQRSISCFLCKGPHRVAECPHRAALTALQAFVQSCNEPEVETDCEKEEDE 360
           SRGPYPQSQNAQR +S FLCKGPHRVAECPHRAALTALQA VQSCNEPEVETDCEKEEDE
Sbjct: 366 SRGPYPQSQNAQRLMSYFLCKGPHRVAECPHRAALTALQASVQSCNEPEVETDCEKEEDE 425

Query: 361 ETPRMGAINSYLPFKRGSMDPKERPKRGL 390
           ETPRM A+      ++    PK   ++GL
Sbjct: 426 ETPRMRALKFLSAIQKRVNGPKGTSEKGL 454

[Close]

BLAST of Moc03g27780 vs. ExPASy TrEMBL
Match: A0A6J1DK29 (uncharacterized protein LOC111021829 OS=Momordica charantia OX=3673 GN=LOC111021829 PE=4 SV=1)

HSP 1 Score: 687.2 bits (1772), Expect = 4.0e-194
Identity = 345/389 (88.69%), Postives = 357/389 (91.77%), Query Frame = 0


Query: 1   MRVETLESKATRPGSFERGDNSTNPNTQIEVRMGELNNSHSAMMQLFNEMTEDFKVTIDT 60
           MRVET ESKATRPGSFERGD+STNPNTQIEVRMGELNNSHS MMQLFNEMTEDFKVTIDT
Sbjct: 66  MRVETXESKATRPGSFERGDSSTNPNTQIEVRMGELNNSHSTMMQLFNEMTEDFKVTIDT 125

Query: 61  FRAEMTEISTRVNLTMRAVGNKAPNQANMGFNKLKVPEPKPFNGNRDAKDLENFMFDVEQ 120
            RAEMTEISTRVNLTMRAVGN+APNQ NMGFNKLKVPEPKPFNGNR  KDLENF FDVEQ
Sbjct: 126 LRAEMTEISTRVNLTMRAVGNQAPNQXNMGFNKLKVPEPKPFNGNRXXKDLENFXFDVEQ 185

Query: 121 YFKDTGTTSEEMKVTLATIHLTDDAKLWWRSKVNDIQNGRCTINSWDDLKKELRSQFFLD 180
           YFK TGT SE MKVTLAT+HLTDDAKLWWRSKVNDIQNGRCTINSWDDLKKELR QFFLD
Sbjct: 186 YFKXTGTXSEXMKVTLATMHLTDDAKLWWRSKVNDIQNGRCTINSWDDLKKELRGQFFLD 245

Query: 181 NVEFMARRKLRELRHTGTIRDYVKQFSAVMLDIRDMSEKDKVFVFIEGLKSWARTKLYEQ 240
           NVEFMARRKLRELRHTGTIRDYVKQFSAVMLDIRDMSEKDKVFVFIEGLK WARTKLYEQ
Sbjct: 246 NVEFMARRKLRELRHTGTIRDYVKQFSAVMLDIRDMSEKDKVFVFIEGLKLWARTKLYEQ 305

Query: 241 RVQDLATAMAAAKRLLDYSSEPSHPKKNATNPTGGNKTFTPFTPKSGGADKRPQGPNPGP 300
           RVQDLATAMA+A+RLLDYSSEPSHPKKNATNPTGGNKTF PFTPK GGADKRP GPNPGP
Sbjct: 306 RVQDLATAMASAERLLDYSSEPSHPKKNATNPTGGNKTFKPFTPKIGGADKRPLGPNPGP 365

Query: 301 SRGPYPQSQNAQRSISCFLCKGPHRVAECPHRAALTALQAFVQSCNEPEVETDCEKEEDE 360
           SRGPYPQSQNAQR  SCFLC+GPH+VAECPHRAALTALQA VQSCNEPEV TDCEKEEDE
Sbjct: 366 SRGPYPQSQNAQRPKSCFLCRGPHQVAECPHRAALTALQASVQSCNEPEVGTDCEKEEDE 425

Query: 361 ETPRMGAINSYLPFKRGSMDPKERPKRGL 390
           ETPRMGA+      ++    PK   ++GL
Sbjct: 426 ETPRMGALKFLSAIQKRVNGPKGTSEKGL 454

[Close]

BLAST of Moc03g27780 vs. ExPASy TrEMBL
Match: A0A5A7SZS9 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G00960 PE=4 SV=1)

HSP 1 Score: 378.6 bits (971), Expect = 3.1e-101
Identity = 197/399 (49.37%), Postives = 280/399 (70.18%), Query Frame = 0


Query: 2   RVETLES--KATRPGSFERGDNSTNPNTQIEVRMGELNNSHSAMMQLFNEMTEDFKVTID 61
           RV+ LE+  K  R  ++ERGD+ST     IE R+ EL++S   ++++ N M+EDF+ T+D
Sbjct: 67  RVDALETTIKIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSEDFRATLD 126

Query: 62  TFRAEMTEISTRVNLTMRAVGNKAPNQANMGFNKLKVPEPKPFNGNRDAKDLENFMFDVE 121
             R E+ +++ R++LTMRA+ N AP    +  +++K+PEPKPF G RDAK LEN++FD+E
Sbjct: 127 VVRNEIVDVNARLSLTMRAMANHAPAGGAIPVSRVKIPEPKPFCGARDAKALENYIFDLE 186

Query: 122 QYFKDTGTTSEEMKVTLATIHLTDDAKLWWRSKVNDIQNGRCTINSWDDLKKELRSQFFL 181
           QYF+ T T +EE KVTLAT+HL++DAKLWWRS+  DIQ GRCTI++WD LK+ELRSQFF 
Sbjct: 187 QYFRATNTVTEEAKVTLATMHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKRELRSQFFP 246

Query: 182 DNVEFMARRKLRELRHTGTIRDYVKQFSAVMLDIRDMSEKDKVFVFIEGLKSWARTKLYE 241
           +NVE +ARRKLREL+HTG+IRDYVKQF+ +MLDIRDMSEKDKVF F+EGLK WA+TKLYE
Sbjct: 247 ENVEILARRKLRELKHTGSIRDYVKQFAGLMLDIRDMSEKDKVFCFVEGLKLWAKTKLYE 306

Query: 242 QRVQDLATAMAAAKRLLDYSSEPSHPKKNATNPTGGNKTFTPFTPKSGGADKRPQG---- 301
           QRVQDL +A AAA+RL D S++    +++ ++ +GG++   P +PK+ G D+R  G    
Sbjct: 307 QRVQDLTSAYAAAERLFDLSNDSQDTRRHPSSSSGGSRNNRPSSPKTTGRDRRFNGDRRS 366

Query: 302 --PNPGPSRGPYPQSQNAQRSISCFLCKGPHRVAECPHRAALTALQAFVQSCN---EPEV 361
              N G S         + R +SCF+CKGPH   ECP++ A +A QA + S +   + ++
Sbjct: 367 NQSNTGNSWRGSSNQNLSNRPLSCFICKGPHMARECPNKTAFSAFQASLASDSDNQQSQI 426

Query: 362 ETDCEKEEDEETPRMGAINSYLPFKRGSMDPKERPKRGL 390
           E + ++ E+ + PRMGA+      ++   +     +RGL
Sbjct: 427 EREVDQTEEVDNPRMGALKFLSSLQKKVGETNTLVERGL 465

[Close]

BLAST of Moc03g27780 vs. ExPASy TrEMBL
Match: A0A5D3DQ20 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G007440 PE=4 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 2.0e-100
Identity = 195/399 (48.87%), Postives = 278/399 (69.67%), Query Frame = 0


Query: 2   RVETLESKAT--RPGSFERGDNSTNPNTQIEVRMGELNNSHSAMMQLFNEMTEDFKVTID 61
           RV+ LE+     R  ++ERGD+ST     IE R+ EL++S   ++++ N M+EDF+ T+D
Sbjct: 67  RVDALETTVNIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSEDFRATLD 126

Query: 62  TFRAEMTEISTRVNLTMRAVGNKAPNQANMGFNKLKVPEPKPFNGNRDAKDLENFMFDVE 121
             R E+ +++ R++LTMRA+ N+AP    +  +++K+PEPKPF G RDAK LEN++FD+E
Sbjct: 127 VVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCGARDAKALENYIFDLE 186

Query: 122 QYFKDTGTTSEEMKVTLATIHLTDDAKLWWRSKVNDIQNGRCTINSWDDLKKELRSQFFL 181
           QYF+ T T +EE KVTLAT+HL++DAKLWWRS+  DIQ GRCTI++WD LK+ELRSQFF 
Sbjct: 187 QYFRATNTVTEEAKVTLATMHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKRELRSQFFP 246

Query: 182 DNVEFMARRKLRELRHTGTIRDYVKQFSAVMLDIRDMSEKDKVFVFIEGLKSWARTKLYE 241
           +NVE +ARRKLREL+HTG+IR+YVKQF+ +MLDIRDMSEKDKVF F+EGLK WA+TKLYE
Sbjct: 247 ENVEILARRKLRELKHTGSIREYVKQFAGLMLDIRDMSEKDKVFCFVEGLKPWAKTKLYE 306

Query: 242 QRVQDLATAMAAAKRLLDYSSEPSHPKKNATNPTGGNKTFTPFTPKSGGADKRPQG---- 301
           QRVQDL +A AAA+RL D S++    +++ ++ +GG++   P +PK+ G D+R  G    
Sbjct: 307 QRVQDLTSAYAAAERLFDLSNDSQDTRRHPSSSSGGSRNNRPSSPKTTGGDRRFNGDRRS 366

Query: 302 --PNPGPSRGPYPQSQNAQRSISCFLCKGPHRVAECPHRAALTALQAFVQSCN---EPEV 361
              N G S         + R +SCF+CKGPH   ECP++ A  A QA + S +   + + 
Sbjct: 367 HQSNTGNSWRGSSNQNLSNRPLSCFICKGPHMARECPNKTAFNAFQASLASDSDNQQSQT 426

Query: 362 ETDCEKEEDEETPRMGAINSYLPFKRGSMDPKERPKRGL 390
           E + ++ E+ + PRMGA+      ++   +     +RGL
Sbjct: 427 EREVDQTEEVDNPRMGALKFLSSLQKKVGETNTPVERGL 465

[Close]

BLAST of Moc03g27780 vs. ExPASy TrEMBL
Match: A0A5A7UIP7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27G00270 PE=4 SV=1)

HSP 1 Score: 375.6 bits (963), Expect = 2.6e-100
Identity = 195/399 (48.87%), Postives = 277/399 (69.42%), Query Frame = 0


Query: 2   RVETLESKAT--RPGSFERGDNSTNPNTQIEVRMGELNNSHSAMMQLFNEMTEDFKVTID 61
           RV+ LE+     R  ++ERGD+ST     IE R+ EL++S   ++++ N M+EDF+ T+D
Sbjct: 67  RVDALETTVNIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSEDFRATLD 126

Query: 62  TFRAEMTEISTRVNLTMRAVGNKAPNQANMGFNKLKVPEPKPFNGNRDAKDLENFMFDVE 121
             R E+ +++ R++LTMRA+ N+AP    +  +++K+PEPKPF G RDAK LEN++FD+E
Sbjct: 127 VVRNEIADVNARLSLTMRAMANQAPTGGAIPVSRVKIPEPKPFCGARDAKALENYIFDLE 186

Query: 122 QYFKDTGTTSEEMKVTLATIHLTDDAKLWWRSKVNDIQNGRCTINSWDDLKKELRSQFFL 181
           QYF+ T T +EE KVTLAT+HL++DAKLWWRS+  DIQ GRCTI++WD LK+ELRSQFF 
Sbjct: 187 QYFRATNTVTEEAKVTLATMHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKRELRSQFFP 246

Query: 182 DNVEFMARRKLRELRHTGTIRDYVKQFSAVMLDIRDMSEKDKVFVFIEGLKSWARTKLYE 241
           +NVE +ARRKLREL+HTG+IR+YVKQF+ +MLDIRDMSEKDKVF F+EGLK WA+TKLYE
Sbjct: 247 ENVEILARRKLRELKHTGSIREYVKQFAGLMLDIRDMSEKDKVFCFVEGLKPWAKTKLYE 306

Query: 242 QRVQDLATAMAAAKRLLDYSSEPSHPKKNATNPTGGNKTFTPFTPKSGGADKRPQG---- 301
           QRVQDL +A AAA+RL D S++    +++ ++ +GG++   P +PK+ G D+R  G    
Sbjct: 307 QRVQDLTSAYAAAERLFDLSNDSQDTRRHPSSSSGGSRNNRPSSPKTTGGDRRFSGDRRS 366

Query: 302 --PNPGPSRGPYPQSQNAQRSISCFLCKGPHRVAECPHRAALTALQAFVQSCN---EPEV 361
              N G S         + R +SCF+CKGPH   ECP++ A  A QA + S +   + + 
Sbjct: 367 HQSNTGNSWRGSSNQNLSNRPLSCFICKGPHMARECPNKTAFNAFQASLTSDSDNQQSQT 426

Query: 362 ETDCEKEEDEETPRMGAINSYLPFKRGSMDPKERPKRGL 390
           E +  + E+ + PRMGA+      ++   +     +RGL
Sbjct: 427 EGEVNQTEEVDNPRMGALKFLSSLQKKVGETNTPVERGL 465

The following BLAST results are available for this feature:

BLAST of Moc03g27780 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150099.1	1.5e-198	90.49	uncharacterized protein LOC111018360 [Momordica charantia]	[more]
XP_022154605.1	8.3e-194	88.69	uncharacterized protein LOC111021829 [Momordica charantia]	[more]
KAA0035456.1	6.3e-101	49.37	uncharacterized protein E6C27_scaffold285G00960 [Cucumis melo var. makuwa]	[more]
TYK25585.1	4.1e-100	48.87	uncharacterized protein E5676_scaffold352G007440 [Cucumis melo var. makuwa]	[more]
KAA0053339.1	5.4e-100	48.87	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of Moc03g27780 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc03g27780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D906	5.4e-199	90.75	Reverse transcriptase OS=Momordica charantia OX=3673 GN=LOC111018360 PE=4 SV=1	[more]
A0A6J1DK29	4.0e-194	88.69	uncharacterized protein LOC111021829 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A5A7SZS9	3.1e-101	49.37	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3DQ20	2.0e-100	48.87	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7UIP7	2.6e-100	48.87	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27...	[more]

BLAST of Moc03g27780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 136..230 e-value: 9.3E-18 score: 64.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 353..391
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 257..309
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 263..283
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 377..391
None	No IPR available	PANTHER	PTHR34482	DNA DAMAGE-INDUCIBLE PROTEIN 1-LIKE	coord: 47..348
None	No IPR available	PANTHER	PTHR34482:SF18	RETROTRANSPOSON GAG DOMAIN, ASPARTIC PEPTIDASE DOMAIN PROTEIN-RELATED	coord: 47..348

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc03g27780.1	Moc03g27780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016740	transferase activity