Moc03g25840 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc03g25840
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Descriptionprotein TIFY 5A-like
Locationchr3: 18578310 .. 18578770 (+)
RNA-Seq ExpressionMoc03g25840
SyntenyMoc03g25840
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCATGATTTTCCCAACTCCTCCAATGGAACCACAACACACCCTCCACTGCAACTTGGAGCTCTGCCTCTCTCCGCCGCCGGCGCCACCTTCCTCCGCCACCGCCGCTGAATCAACAACCACTTCAACTTCCGACCACCACCACCCCATGGTCAATTATCATCATGGATTCCCTGTTACTGATCTTACAGAGCTCCAGGTACATATATTGCTCAAATTTACCTTTTAATTGTCAAGAACAAACCTAACTCAATAGTAATTAATTTGGGTTATGGGTATTGGCAGGCGAGAGCGATCATAATAGGAGCCACGCGACAGATGGAGGAGAGGAAGACGACATGTCGGACCAGATCGGCGGAGGAGAAATCAAGCTCCATGAAGAGATCGCTGCAGAGGTTTTTACAGAAGAGAAAGCATCGCATACAAACACTCACACCCTACACTACTCATCACTTCTAG

mRNA sequence

ATGACCATGATTTTCCCAACTCCTCCAATGGAACCACAACACACCCTCCACTGCAACTTGGAGCTCTGCCTCTCTCCGCCGCCGGCGCCACCTTCCTCCGCCACCGCCGCTGAATCAACAACCACTTCAACTTCCGACCACCACCACCCCATGGTCAATTATCATCATGGATTCCCTGTTACTGATCTTACAGAGCTCCAGGCGAGAGCGATCATAATAGGAGCCACGCGACAGATGGAGGAGAGGAAGACGACATGTCGGACCAGATCGGCGGAGGAGAAATCAAGCTCCATGAAGAGATCGCTGCAGAGGTTTTTACAGAAGAGAAAGCATCGCATACAAACACTCACACCCTACACTACTCATCACTTCTAG

Coding sequence (CDS)

ATGACCATGATTTTCCCAACTCCTCCAATGGAACCACAACACACCCTCCACTGCAACTTGGAGCTCTGCCTCTCTCCGCCGCCGGCGCCACCTTCCTCCGCCACCGCCGCTGAATCAACAACCACTTCAACTTCCGACCACCACCACCCCATGGTCAATTATCATCATGGATTCCCTGTTACTGATCTTACAGAGCTCCAGGCGAGAGCGATCATAATAGGAGCCACGCGACAGATGGAGGAGAGGAAGACGACATGTCGGACCAGATCGGCGGAGGAGAAATCAAGCTCCATGAAGAGATCGCTGCAGAGGTTTTTACAGAAGAGAAAGCATCGCATACAAACACTCACACCCTACACTACTCATCACTTCTAG

Protein sequence

MTMIFPTPPMEPQHTLHCNLELCLSPPPAPPSSATAAESTTTSTSDHHHPMVNYHHGFPVTDLTELQARAIIIGATRQMEERKTTCRTRSAEEKSSSMKRSLQRFLQKRKHRIQTLTPYTTHHF
Homology
BLAST of Moc03g25840 vs. NCBI nr
Match: XP_022140147.1 (protein TIFY 5A-like [Momordica charantia])

HSP 1 Score: 246.5 bits (628), Expect = 1.2e-61
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0

Query: 1   MTMIFPTPPMEPQHTLHCNLELCLSPPPAPPSSATAAESTTTSTSDHHHPMVNYHHGFPV 60
           MTMIFPTPPMEPQHTLHCNLELCLSPPPAPPSSATAAESTTTSTSDHHHPMVNYHHGFPV
Sbjct: 1   MTMIFPTPPMEPQHTLHCNLELCLSPPPAPPSSATAAESTTTSTSDHHHPMVNYHHGFPV 60

Query: 61  TDLTELQARAIIIGATRQMEERKTTCRTRSAEEKSSSMKRSLQRFLQKRKHRIQTLTPYT 120
           TDLTELQARAIIIGATRQMEERKTTCRTRSAEEKSSSMKRSLQRFLQKRKHRIQTLTPYT
Sbjct: 61  TDLTELQARAIIIGATRQMEERKTTCRTRSAEEKSSSMKRSLQRFLQKRKHRIQTLTPYT 120

Query: 121 THHF 125
           THHF
Sbjct: 121 THHF 124

BLAST of Moc03g25840 vs. NCBI nr
Match: XP_023520316.1 (protein TIFY 5A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 103.2 bits (256), Expect = 1.6e-18
Identity = 67/118 (56.78%), Postives = 82/118 (69.49%), Query Frame = 0

Query: 13  QHTLHCNLELCLSPPPAPPSSATA-AESTTTSTSDHHHPMVNYHHGFPVTDLTELQARAI 72
           ++ L+CNLELCLSPP + PS+ATA A ST+TS  +H  P        P+ DLTELQARAI
Sbjct: 2   ENILNCNLELCLSPPSSSPSTATATANSTSTSCHNHIDPT-----RVPIPDLTELQARAI 61

Query: 73  IIGATRQM--EERKTTCRTRSAEEK-------SSSMKRSLQRFLQKRKHRIQTLTPYT 121
           I+ AT QM  E R TTC   S +++       S SM+RSLQRFLQKRKHRIQTL+PY+
Sbjct: 62  IVRATTQMEVERRLTTCHISSPKQRVSMKSGASPSMRRSLQRFLQKRKHRIQTLSPYS 114

BLAST of Moc03g25840 vs. NCBI nr
Match: XP_038895134.1 (protein TIFY 5A-like [Benincasa hispida])

HSP 1 Score: 99.8 bits (247), Expect = 1.8e-17
Identity = 68/121 (56.20%), Postives = 80/121 (66.12%), Query Frame = 0

Query: 10  MEPQHTLHCNLELCLSPPPAPPSSATAAESTTTSTSDHHHPMVNYHHGFPVTDLTELQAR 69
           MEP   L+CNLELCLSPP + PS+     + +TSTS H+H         P+ DLTELQAR
Sbjct: 1   MEP--FLNCNLELCLSPPSSSPSTIAVTATNSTSTSQHNHLSPT---EVPILDLTELQAR 60

Query: 70  AIIIGATRQME-ERKTTCR------TRSAEEKSS---SMKRSLQRFLQKRKHRIQTLTPY 121
           AII+ ATRQME ER++T R      T     KS    SM+RSLQRFLQKRKHR QTL+PY
Sbjct: 61  AIIVRATRQMEAERRSTTRRISLPTTEQISMKSGASPSMRRSLQRFLQKRKHRTQTLSPY 116

BLAST of Moc03g25840 vs. NCBI nr
Match: KAG7019513.1 (Protein TIFY 5A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 99.8 bits (247), Expect = 1.8e-17
Identity = 66/118 (55.93%), Postives = 80/118 (67.80%), Query Frame = 0

Query: 13  QHTLHCNLELCLSPPPAPPSSATA-AESTTTSTSDHHHPMVNYHHGFPVTDLTELQARAI 72
           ++ L+CNLELCLSPP + PS+ATA A ST+TS  +H  P        P+ D TELQARAI
Sbjct: 2   ENILNCNLELCLSPPSSSPSTATATANSTSTSCHNHIDPT-----RVPIPDHTELQARAI 61

Query: 73  IIGATRQM--EERKTTCRTRSAEEK-------SSSMKRSLQRFLQKRKHRIQTLTPYT 121
           I+ AT QM  E R TTC   S  ++       S SM+RSLQRFLQKRKHRIQTL+PY+
Sbjct: 62  IVRATTQMEAERRLTTCHISSPTQRVSMKSGASPSMRRSLQRFLQKRKHRIQTLSPYS 114

BLAST of Moc03g25840 vs. NCBI nr
Match: XP_023001493.1 (protein TIFY 5A-like [Cucurbita maxima])

HSP 1 Score: 99.0 bits (245), Expect = 3.1e-17
Identity = 66/118 (55.93%), Postives = 79/118 (66.95%), Query Frame = 0

Query: 13  QHTLHCNLELCLSPPPAPPS-SATAAESTTTSTSDHHHPMVNYHHGFPVTDLTELQARAI 72
           ++ L+CNLELCLSPP + PS +AT A + +TSTS H+HP        P+ DLTELQARAI
Sbjct: 2   ENILNCNLELCLSPPSSSPSTTATVAAANSTSTSCHNHPT-----RVPLLDLTELQARAI 61

Query: 73  IIGATRQM--EERKTTCRTRSAEE-------KSSSMKRSLQRFLQKRKHRIQTLTPYT 121
           I+ A  QM  E R TTC      E        S SM+RSLQRFLQKRKHRIQTL+PY+
Sbjct: 62  IVRAITQMEAERRLTTCYISLPTEPMSMKSGASPSMRRSLQRFLQKRKHRIQTLSPYS 114

BLAST of Moc03g25840 vs. ExPASy TrEMBL
Match: A0A6J1CG02 (protein TIFY 5A-like OS=Momordica charantia OX=3673 GN=LOC111010877 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 5.8e-62
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0

Query: 1   MTMIFPTPPMEPQHTLHCNLELCLSPPPAPPSSATAAESTTTSTSDHHHPMVNYHHGFPV 60
           MTMIFPTPPMEPQHTLHCNLELCLSPPPAPPSSATAAESTTTSTSDHHHPMVNYHHGFPV
Sbjct: 1   MTMIFPTPPMEPQHTLHCNLELCLSPPPAPPSSATAAESTTTSTSDHHHPMVNYHHGFPV 60

Query: 61  TDLTELQARAIIIGATRQMEERKTTCRTRSAEEKSSSMKRSLQRFLQKRKHRIQTLTPYT 120
           TDLTELQARAIIIGATRQMEERKTTCRTRSAEEKSSSMKRSLQRFLQKRKHRIQTLTPYT
Sbjct: 61  TDLTELQARAIIIGATRQMEERKTTCRTRSAEEKSSSMKRSLQRFLQKRKHRIQTLTPYT 120

Query: 121 THHF 125
           THHF
Sbjct: 121 THHF 124

BLAST of Moc03g25840 vs. ExPASy TrEMBL
Match: A0A6J1KQP6 (protein TIFY 5A-like OS=Cucurbita maxima OX=3661 GN=LOC111495613 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.5e-17
Identity = 66/118 (55.93%), Postives = 79/118 (66.95%), Query Frame = 0

Query: 13  QHTLHCNLELCLSPPPAPPS-SATAAESTTTSTSDHHHPMVNYHHGFPVTDLTELQARAI 72
           ++ L+CNLELCLSPP + PS +AT A + +TSTS H+HP        P+ DLTELQARAI
Sbjct: 2   ENILNCNLELCLSPPSSSPSTTATVAAANSTSTSCHNHPT-----RVPLLDLTELQARAI 61

Query: 73  IIGATRQM--EERKTTCRTRSAEE-------KSSSMKRSLQRFLQKRKHRIQTLTPYT 121
           I+ A  QM  E R TTC      E        S SM+RSLQRFLQKRKHRIQTL+PY+
Sbjct: 62  IVRAITQMEAERRLTTCYISLPTEPMSMKSGASPSMRRSLQRFLQKRKHRIQTLSPYS 114

BLAST of Moc03g25840 vs. ExPASy TrEMBL
Match: A0A6J1EN30 (protein TIFY 5A-like OS=Cucurbita moschata OX=3662 GN=LOC111434085 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.5e-17
Identity = 65/117 (55.56%), Postives = 79/117 (67.52%), Query Frame = 0

Query: 13  QHTLHCNLELCLSPPPAPPSSATAAESTTTSTSDHHHPMVNYHHGFPVTDLTELQARAII 72
           ++ L+CNLELCLSPP + PS+AT A ST+TS  +H  P        P+ D TELQARAII
Sbjct: 2   ENILNCNLELCLSPPSSSPSTAT-ANSTSTSCHNHIDPT-----RVPIPDHTELQARAII 61

Query: 73  IGATRQM--EERKTTCRTRSAEEK-------SSSMKRSLQRFLQKRKHRIQTLTPYT 121
           + AT QM  E R TTC   S  ++       S SM+RSLQRFLQKRKHRIQTL+PY+
Sbjct: 62  VRATTQMEAERRLTTCHISSPTQRVSMKSGASPSMRRSLQRFLQKRKHRIQTLSPYS 112

BLAST of Moc03g25840 vs. ExPASy TrEMBL
Match: A0A1S3BA64 (protein TIFY 5A-like OS=Cucumis melo OX=3656 GN=LOC103487726 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.7e-16
Identity = 65/123 (52.85%), Postives = 81/123 (65.85%), Query Frame = 0

Query: 13  QHTLHCNLELCLSPPPAPPS---SATAAESTTTSTSDHHH--PMVNYHHGFPVTDLTELQ 72
           +H  + NLELCLSPP + PS   + T A + + S+S H+H  P+     G P  DLTE+Q
Sbjct: 2   EHFPNFNLELCLSPPSSSPSTTTTTTTAAAASNSSSQHNHITPI-----GVPTPDLTEIQ 61

Query: 73  ARAIIIGATRQM--EERKTTCRTRSAEEK--------SSSMKRSLQRFLQKRKHRIQTLT 121
           A+AII+ ATRQM  E R TTCR  S+ E+        S SM+RSLQRFLQKRK RIQTL+
Sbjct: 62  AKAIIVEATRQMEAERRWTTCRISSSAERVWMRSGEASPSMRRSLQRFLQKRKLRIQTLS 119

BLAST of Moc03g25840 vs. ExPASy TrEMBL
Match: A0A0A0LX13 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G435790 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.1e-12
Identity = 61/124 (49.19%), Postives = 77/124 (62.10%), Query Frame = 0

Query: 10  MEPQHTLHCNLELCLSPPPAPPSSATAA---ESTTTSTSDHHHPMVNYHHGFPVTDLTEL 69
           MEP      NLELCLSPP + PS+ T+     S +TS  +H  P+     G    DLTE+
Sbjct: 1   MEPLSNF--NLELCLSPPSSSPSTTTSTLPLASNSTSQPNHITPI-----GLFTPDLTEI 60

Query: 70  QARAIIIGATRQMEERKT---TCRTRSAEEK--------SSSMKRSLQRFLQKRKHRIQT 120
           QA+AII+ ATRQME  ++   TCR  S+ E+        S S++RSLQRFLQKRK RIQT
Sbjct: 61  QAKAIIVQATRQMEAERSRWRTCRISSSAERVLMTNGEASPSLRRSLQRFLQKRKLRIQT 117

BLAST of Moc03g25840 vs. TAIR 10
Match: AT1G30135.1 (jasmonate-zim-domain protein 8 )

HSP 1 Score: 41.6 bits (96), Expect = 5.4e-04
Identity = 39/122 (31.97%), Postives = 61/122 (50.00%), Query Frame = 0

Query: 17  HCNLELCLSPPPAPPSSATAAESTTTSTSDHHHP------MVNYHHGFPV--TDLTELQA 76
           +C+LEL L P      S+       +++S +  P      +  +++G     +D+T LQA
Sbjct: 6   NCDLELRLFPTSYDSDSSDTTSVVESTSSGNPQPNEESQRITIFYNGKMCFSSDVTHLQA 65

Query: 77  RAIIIGATRQME-----------ERKTTCRTRSAEEKSSSMKRSLQRFLQKRKHRIQTLT 120
           R+II  A+R+M+            + T+          +SMK+SLQ FLQKRK RIQ  +
Sbjct: 66  RSIISIASREMKTKSSSNGSDPPNKSTSFHHNQLPNPKASMKKSLQSFLQKRKIRIQATS 125

BLAST of Moc03g25840 vs. TAIR 10
Match: AT2G34600.1 (jasmonate-zim-domain protein 7 )

HSP 1 Score: 41.6 bits (96), Expect = 5.4e-04
Identity = 28/72 (38.89%), Postives = 40/72 (55.56%), Query Frame = 0

Query: 61  TDLTELQARAIIIGATRQMEERKTTCRTRSAEE-------------KSSSMKRSLQRFLQ 120
           +DLT L+A AI+  A+R +EE+  + R+    +             + +SMKRSL  FLQ
Sbjct: 73  SDLTHLEANAILSLASRDVEEKSLSLRSSDGSDPPTIPNNSTRFHYQKASMKRSLHSFLQ 132

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022140147.11.2e-61100.00protein TIFY 5A-like [Momordica charantia][more]
XP_023520316.11.6e-1856.78protein TIFY 5A-like [Cucurbita pepo subsp. pepo][more]
XP_038895134.11.8e-1756.20protein TIFY 5A-like [Benincasa hispida][more]
KAG7019513.11.8e-1755.93Protein TIFY 5A [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_023001493.13.1e-1755.93protein TIFY 5A-like [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CG025.8e-62100.00protein TIFY 5A-like OS=Momordica charantia OX=3673 GN=LOC111010877 PE=4 SV=1[more]
A0A6J1KQP61.5e-1755.93protein TIFY 5A-like OS=Cucurbita maxima OX=3661 GN=LOC111495613 PE=4 SV=1[more]
A0A6J1EN302.5e-1755.56protein TIFY 5A-like OS=Cucurbita moschata OX=3662 GN=LOC111434085 PE=4 SV=1[more]
A0A1S3BA643.7e-1652.85protein TIFY 5A-like OS=Cucumis melo OX=3656 GN=LOC103487726 PE=4 SV=1[more]
A0A0A0LX131.1e-1249.19Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G435790 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G30135.15.4e-0431.97jasmonate-zim-domain protein 8 [more]
AT2G34600.15.4e-0438.89jasmonate-zim-domain protein 7 [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018467CO/COL/TOC1, conserved sitePFAMPF09425Jas_motifcoord: 99..119
e-value: 2.2E-9
score: 37.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..48
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 80..99
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 79..100
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..53
NoneNo IPR availablePANTHERPTHR33077:SF17PROTEIN TIFY 5Bcoord: 17..120
IPR040390TIFY/JAZ familyPANTHERPTHR33077PROTEIN TIFY 4A-RELATED-RELATEDcoord: 17..120

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc03g25840.1Moc03g25840.1mRNA