Moc03g22610 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc03g22610
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Ribonuclease H
Location	chr3: 15969659 .. 15970054 (+)
RNA-Seq Expression	Moc03g22610
Synteny	Moc03g22610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCCTGATGAGAGCCATCGGTGCTTCGAAGAGAAGAGCCTGAAAGAAGCGGCTGATCACTTAGATGAGGCAAGACCGAGCCCTGATCGTCAACTTAATCCGACCACCCTTGACGGGAGAGAACCAGTGTCGGGCCTGAATAAAGCGACAGACCTCTCAGGAAAGGCGAGGCCGAGCCCTGGTTATCGACTTAATCCAACCACCCTTGATAAGGGAGAACCAGTGGCGGGCCTGATTAAAACGACAGATTTTTCGGGAGAGGCAAGGCCGAGCCCTGGTCATCGACTTAATTCGACCACCCTTGACAGGGGAGAACCGGCTGAAGAGGTAGAATCTGTCCCTCTGACAGCCATAAGATCGACGGGTCAACATCGGAACCAAGTTGGGGAGTGA

mRNA sequence

ATGAATCCTGATGAGAGCCATCGGTGCTTCGAAGAGAAGAGCCTGAAAGAAGCGGCTGATCACTTAGATGAGGCAAGACCGAGCCCTGATCGTCAACTTAATCCGACCACCCTTGACGGGAGAGAACCAGTGTCGGGCCTGAATAAAGCGACAGACCTCTCAGGAAAGGCGAGGCCGAGCCCTGGTTATCGACTTAATCCAACCACCCTTGATAAGGGAGAACCAGTGGCGGGCCTGATTAAAACGACAGATTTTTCGGGAGAGGCAAGGCCGAGCCCTGGTCATCGACTTAATTCGACCACCCTTGACAGGGGAGAACCGGCTGAAGAGGTAGAATCTGTCCCTCTGACAGCCATAAGATCGACGGGTCAACATCGGAACCAAGTTGGGGAGTGA

Coding sequence (CDS)

ATGAATCCTGATGAGAGCCATCGGTGCTTCGAAGAGAAGAGCCTGAAAGAAGCGGCTGATCACTTAGATGAGGCAAGACCGAGCCCTGATCGTCAACTTAATCCGACCACCCTTGACGGGAGAGAACCAGTGTCGGGCCTGAATAAAGCGACAGACCTCTCAGGAAAGGCGAGGCCGAGCCCTGGTTATCGACTTAATCCAACCACCCTTGATAAGGGAGAACCAGTGGCGGGCCTGATTAAAACGACAGATTTTTCGGGAGAGGCAAGGCCGAGCCCTGGTCATCGACTTAATTCGACCACCCTTGACAGGGGAGAACCGGCTGAAGAGGTAGAATCTGTCCCTCTGACAGCCATAAGATCGACGGGTCAACATCGGAACCAAGTTGGGGAGTGA

Protein sequence

MNPDESHRCFEEKSLKEAADHLDEARPSPDRQLNPTTLDGREPVSGLNKATDLSGKARPSPGYRLNPTTLDKGEPVAGLIKTTDFSGEARPSPGHRLNSTTLDRGEPAEEVESVPLTAIRSTGQHRNQVGE

Homology

[Close]

BLAST of Moc03g22610 vs. NCBI nr
Match: XP_022156571.1 (uncharacterized protein LOC111023448 [Momordica charantia])

HSP 1 Score: 227.3 bits (578), Expect = 7.9e-56
Identity = 112/118 (94.92%), Postives = 114/118 (96.61%), Query Frame = 0


Query: 1   MNPDESHRCFEEKSLKEAADHLDEARPSPDRQLNPTTLDGREPVSGLNKATDLSGKARPS 60
           MNPDESHRCFEEKSLK+AADHLDEARPSPDRQLNPTTLDG EPVSGLNKATDLSGKARPS
Sbjct: 1   MNPDESHRCFEEKSLKKAADHLDEARPSPDRQLNPTTLDGGEPVSGLNKATDLSGKARPS 60

Query: 61  PGYRLNPTTLDKGEPVAGLIKTTDFSGEARPSPGHRLNSTTLDRGEPAEEVESVPLTA 119
           PGYRLNPTTLDKG PVAGLIK TD SG+ARPSPGHRLNSTTLDRGEPAEEVESVPLTA
Sbjct: 61  PGYRLNPTTLDKGGPVAGLIKATDLSGDARPSPGHRLNSTTLDRGEPAEEVESVPLTA 118

[Close]

BLAST of Moc03g22610 vs. NCBI nr
Match: XP_022156048.1 (uncharacterized protein LOC111023016 [Momordica charantia])

HSP 1 Score: 79.3 bits (194), Expect = 2.7e-11
Identity = 39/45 (86.67%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 73  GEPVAGLIKTTDFSGEARPSPGHRLNSTTLDRGEPAEEVESVPLT 118
           GEPV GL K TD SGEARPSPGHRLNSTTLDRG  AEEVESVPLT
Sbjct: 33  GEPVTGLNKATDLSGEARPSPGHRLNSTTLDRGGSAEEVESVPLT 77

[Close]

BLAST of Moc03g22610 vs. NCBI nr
Match: XP_022158042.1 (uncharacterized protein LOC111024621 [Momordica charantia])

HSP 1 Score: 68.6 bits (166), Expect = 4.7e-08
Identity = 46/117 (39.32%), Postives = 57/117 (48.72%), Query Frame = 0


Query: 2   NPDESHRCFEEKSLKEAADHLDEARPSPDRQLNPTTLDGREPVSGLNKATDLSGKARPSP 61
           NP E  +CFEE+SL+ AA+ L E  PSPD Q NPTT D  EPV G+              
Sbjct: 7   NP-EGQQCFEEESLEVAANGLGEICPSPDHQPNPTTFDKGEPVGGVESI----------- 66

Query: 62  GYRLNPTTLDKGEPVAGLIKTTDFSGEARPSPGHRLNSTTLDRGEPAEEVESVPLTA 119
                        P+    +  D  GE   SP    + T  DRGEP +EVES+PLT+
Sbjct: 67  -------------PLTPGDRAVDGLGEICSSPDQLPSPTIFDRGEPTKEVESIPLTS 98

[Close]

BLAST of Moc03g22610 vs. ExPASy TrEMBL
Match: A0A6J1DVC6 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111023448 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 3.8e-56
Identity = 112/118 (94.92%), Postives = 114/118 (96.61%), Query Frame = 0


Query: 1   MNPDESHRCFEEKSLKEAADHLDEARPSPDRQLNPTTLDGREPVSGLNKATDLSGKARPS 60
           MNPDESHRCFEEKSLK+AADHLDEARPSPDRQLNPTTLDG EPVSGLNKATDLSGKARPS
Sbjct: 1   MNPDESHRCFEEKSLKKAADHLDEARPSPDRQLNPTTLDGGEPVSGLNKATDLSGKARPS 60

Query: 61  PGYRLNPTTLDKGEPVAGLIKTTDFSGEARPSPGHRLNSTTLDRGEPAEEVESVPLTA 119
           PGYRLNPTTLDKG PVAGLIK TD SG+ARPSPGHRLNSTTLDRGEPAEEVESVPLTA
Sbjct: 61  PGYRLNPTTLDKGGPVAGLIKATDLSGDARPSPGHRLNSTTLDRGEPAEEVESVPLTA 118

[Close]

BLAST of Moc03g22610 vs. ExPASy TrEMBL
Match: A0A6J1DPJ5 (uncharacterized protein LOC111023016 OS=Momordica charantia OX=3673 GN=LOC111023016 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.3e-11
Identity = 39/45 (86.67%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 73  GEPVAGLIKTTDFSGEARPSPGHRLNSTTLDRGEPAEEVESVPLT 118
           GEPV GL K TD SGEARPSPGHRLNSTTLDRG  AEEVESVPLT
Sbjct: 33  GEPVTGLNKATDLSGEARPSPGHRLNSTTLDRGGSAEEVESVPLT 77

[Close]

BLAST of Moc03g22610 vs. ExPASy TrEMBL
Match: A0A6J1DW49 (uncharacterized protein LOC111024621 OS=Momordica charantia OX=3673 GN=LOC111024621 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.3e-08
Identity = 46/117 (39.32%), Postives = 57/117 (48.72%), Query Frame = 0


Query: 2   NPDESHRCFEEKSLKEAADHLDEARPSPDRQLNPTTLDGREPVSGLNKATDLSGKARPSP 61
           NP E  +CFEE+SL+ AA+ L E  PSPD Q NPTT D  EPV G+              
Sbjct: 7   NP-EGQQCFEEESLEVAANGLGEICPSPDHQPNPTTFDKGEPVGGVESI----------- 66

Query: 62  GYRLNPTTLDKGEPVAGLIKTTDFSGEARPSPGHRLNSTTLDRGEPAEEVESVPLTA 119
                        P+    +  D  GE   SP    + T  DRGEP +EVES+PLT+
Sbjct: 67  -------------PLTPGDRAVDGLGEICSSPDQLPSPTIFDRGEPTKEVESIPLTS 98

The following BLAST results are available for this feature:

BLAST of Moc03g22610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156571.1	7.9e-56	94.92	uncharacterized protein LOC111023448 [Momordica charantia]	[more]
XP_022156048.1	2.7e-11	86.67	uncharacterized protein LOC111023016 [Momordica charantia]	[more]
XP_022158042.1	4.7e-08	39.32	uncharacterized protein LOC111024621 [Momordica charantia]	[more]

BLAST of Moc03g22610 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc03g22610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DVC6	3.8e-56	94.92	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111023448 PE=4 SV=1	[more]
A0A6J1DPJ5	1.3e-11	86.67	uncharacterized protein LOC111023016 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1DW49	2.3e-08	39.32	uncharacterized protein LOC111024621 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]

BLAST of Moc03g22610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 117..131
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc03g22610.1	Moc03g22610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity