Moc03g20940 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc03g20940
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Ribonuclease H
Location	chr3: 14319713 .. 14320244 (-)
RNA-Seq Expression	Moc03g20940
Synteny	Moc03g20940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAGCCTTACGGGGAACTCTAGCCGCAATCCTCTTTTCGCGCCCTTTGTGTCTTCGTCGGACCTTAGGCGAGGTTCTTTCTTCCTTGACCGAGCTTCACTTGCAGCAGAATTCTAACTTGTCTCGACAATGAACTTTGCCTGTACGTGCATTTAAACTCTATCGCGACTCTGACCGGCTTGCCTCTACACTAGGCCAAGCCCCACGGCTCTACCTTGCCTCTACTCTAGGCCAAGGTCTTCTAAACGCAACGTTGCAACTTGTTTCCAACCAACTTGGTTCTCGGCCACTCGACCGTCGTGCTTCTACGATGAGCCAGGACCTTACCGGGATAAGTTCTGACCCGAGCTTAAAACGCCAAGCGGGTACAACCGGGAGATTCCTACCGCTTAACTATGTCAAAACTAGCTTATCAGACCCATCAGACGCCTCTAAGACCATTCCTGCTGAGAAACTAGTCAATAACGGGCTAAACGGCCCTACCGAGTACTGCCGGGATGATTCCTACCGACTTCTGGACAAGGAATGA

mRNA sequence

ATGGCCAGCCTTACGGGGAACTCTAGCCGCAATCCTCTTTTCGCGCCCTTTGTGTCTTCGTCGGACCTTAGGCGAGGCCAAGCCCCACGGCTCTACCTTGCCTCTACTCTAGGCCAAGGTCTTCTAAACGCAACGTTGCAACTTGTTTCCAACCAACTTGGTTCTCGGCCACTCGACCGTCGTGCTTCTACGATGAGCCAGGACCTTACCGGGATAAGTTCTGACCCGAGCTTAAAACGCCAAGCGGGTACAACCGGGAGATTCCTACCGCTTAACTATGTCAAAACTAGCTTATCAGACCCATCAGACGCCTCTAAGACCATTCCTGCTGAGAAACTAGTCAATAACGGGCTAAACGGCCCTACCGAGTACTGCCGGGATGATTCCTACCGACTTCTGGACAAGGAATGA

Coding sequence (CDS)

ATGGCCAGCCTTACGGGGAACTCTAGCCGCAATCCTCTTTTCGCGCCCTTTGTGTCTTCGTCGGACCTTAGGCGAGGCCAAGCCCCACGGCTCTACCTTGCCTCTACTCTAGGCCAAGGTCTTCTAAACGCAACGTTGCAACTTGTTTCCAACCAACTTGGTTCTCGGCCACTCGACCGTCGTGCTTCTACGATGAGCCAGGACCTTACCGGGATAAGTTCTGACCCGAGCTTAAAACGCCAAGCGGGTACAACCGGGAGATTCCTACCGCTTAACTATGTCAAAACTAGCTTATCAGACCCATCAGACGCCTCTAAGACCATTCCTGCTGAGAAACTAGTCAATAACGGGCTAAACGGCCCTACCGAGTACTGCCGGGATGATTCCTACCGACTTCTGGACAAGGAATGA

Protein sequence

MASLTGNSSRNPLFAPFVSSSDLRRGQAPRLYLASTLGQGLLNATLQLVSNQLGSRPLDRRASTMSQDLTGISSDPSLKRQAGTTGRFLPLNYVKTSLSDPSDASKTIPAEKLVNNGLNGPTEYCRDDSYRLLDKE

Homology

[Close]

BLAST of Moc03g20940 vs. NCBI nr
Match: XP_022136647.1 (uncharacterized protein LOC111008302 [Momordica charantia])

HSP 1 Score: 73.2 bits (178), Expect = 2.0e-09
Identity = 40/68 (58.82%), Postives = 47/68 (69.12%), Query Frame = 0


Query: 69  LTGISSDPSLKRQAGTTGRFLPLNYVKTSLSDPSDASKTIPAEKLVNNGLNGPTEYCRDD 128
           ++ +SS P+  +  G       L+YVKTSLS P+DASKTIP EKLVNNGLNG   YCRDD
Sbjct: 512 ISHLSSSPAHPQANG------QLSYVKTSLSGPTDASKTIPIEKLVNNGLNGLIGYCRDD 571

Query: 129 SYRLLDKE 137
            YR  DKE
Sbjct: 572 FYRDPDKE 573

[Close]

BLAST of Moc03g20940 vs. ExPASy TrEMBL
Match: A0A6J1C617 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111008302 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 9.6e-10
Identity = 40/68 (58.82%), Postives = 47/68 (69.12%), Query Frame = 0


Query: 69  LTGISSDPSLKRQAGTTGRFLPLNYVKTSLSDPSDASKTIPAEKLVNNGLNGPTEYCRDD 128
           ++ +SS P+  +  G       L+YVKTSLS P+DASKTIP EKLVNNGLNG   YCRDD
Sbjct: 512 ISHLSSSPAHPQANG------QLSYVKTSLSGPTDASKTIPIEKLVNNGLNGLIGYCRDD 571

Query: 129 SYRLLDKE 137
            YR  DKE
Sbjct: 572 FYRDPDKE 573

The following BLAST results are available for this feature:

BLAST of Moc03g20940 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136647.1	2.0e-09	58.82	uncharacterized protein LOC111008302 [Momordica charantia]	[more]

BLAST of Moc03g20940 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc03g20940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C617	9.6e-10	58.82	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111008302 PE=4 SV=1	[more]

BLAST of Moc03g20940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..81
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc03g20940.1	Moc03g20940.1	mRNA