Moc03g20600 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc03g20600
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Pentatricopeptide repeat-containing protein
Location	chr3: 14028600 .. 14031272 (+)
RNA-Seq Expression	Moc03g20600
Synteny	Moc03g20600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTGTCCAGGGTGTGTTCCCCATGGCCGCATGTCCAAATCATCCTCCCACTCGCTTTCCTTTCATGTCTTTAAAGCTTTCTAGTGTAATTTTCTTGTATCGCGCCAAATTTCAAGCCAATCGGAGTTCACACGGGCCCTGTAGGCTACCGAGTGACTCCTCACCACTTAGGACGTCTACACCTGCCACACCAAATATGCCTTATAATGTACCTTAGGGGGGACTAAGTAGTCATCAAACCTCCCCCGACCAAGCGTTGTATACTTTCTTGCAATCAAAGCTTTCTTGCATCCAATGTTTACAATGCTTGTTTTAAAGATGTTTTCAACTGTTTTTCTCTCTCACGTTTTCTAAAACCAATTTTCTCCTAAAACGTGAGCGCAGGCTAGACCCACGATCGAGATTGTCTGCAACTTACAGTTTTTCCCGGCTGACTTGCTCGCTTGAGCTAGAGCAAGTGCCGCACAATCGCTCGAGCTGCTTTGAAAAAGTGCGATTGACACTCAGCAATCCAACAATTTCAAAACCCATCAAAGGGGCCGGAGACCCTCTTTTGAAAAGACCGGTTCAACATCTCCGGTCAAATATTTAGCATTGGTTCGAAAGGCCGGTTTAACATTTTCAAAGATTGGTGACTGCCGTTCATATATATATATATATATATATATATTTTAATATAGCTTAGTAAATGATGTATATTGGTTATTAGAAAAGAAAAAAAATTATGTCTATCAGTTAAGGTGCCACTAACCTTTTAAAAATAAAAAATTCAAATATTTCACCACACTCAAAATAATAATAATAATAATAATAGAAATTTTGTTTCAAAATATTGGTAATTGTTTAAAAAAATTTGGTTCATTGTCGAGCACCTATATAATAACACCATATTATCTTAATGCAAGCAAGTGATAGAACTTATTTGATATACTTTACGTAGTTATCCCTTCCATCTTTAAAAGAAAAAAAGGAAAATTTTTCTTTTTTTTCCTTAAGTGCAAGTTTTTTAAGTAGAATAAGTAATGTGAAGAGATCCGAACTCATGACATTTTAGTAAGAGATAGGTGTGAATTATCATCGAATTATGCTCATGTTGGTTTCTTTAGTCCAACTTCGTTTAAACTCTCTATTTGAATCCCATGCTTTGTCATTCTCGAGTTAAAATGTAAACGTCCCTTGTATATTTTCATTTTGAAACTATATGAAATTCATATAGATACACGGAAACATTTCAACTTTAGTTTTGAAACAAAAGTGTATAGAATTTACATCAGTAAAAATTATTCAACCAATTTTCTCTTAAGACTTTTTGAGCATAAACTAGAGTGCAAATGAAGAAAATGACAGAGGTTAGATATATATCAATTAATTAAGTTTACCCAAATTCATCGGTAGTTTTCATATTTAAGATGGTATCAGAACAAGAAGTCTTGTGTTCAAACATTTACATTATTATTTTCCCCCTTTATTATTGTTGGGTCTTCTACATCGAGAGGGAGTTAAATATTCATAAATAATAGTTCTTTTAATAGTATTTACAAGTGTCAACCTAGCTTGAGTCAAATGTTTAATTCTACAATTTGTTGTAAAAAACCAATGAGATTTTAGATTTCGACATGACATCCTAGTACATGACCGTGTAATTATTACAATCGAACCATAATAACTATTTCGTAAAAATTAAAATATACATTTATGAAGTTCACATACCAAAACAATAATAATTATTTAAATTCAGAAACTAAAATGAATATTTTAAAATTTTTATTTTAGAAGAAGCTGTAGATATTATAAAGAGCATGCCAATGAAACCCAATGGGATCATATGGGGATCTCTATTGGCTGCATGCCGTACCTATAAAAAAAAACATCGATATGGCAACGTTTGCAGCTGAAAGGTTAGCAGAAGTGGCTCCAGAAAGGACTGGGATTCATGTGCTTCTATCAAACATATATGCTTCAACTGGAAAGTGAGCCGATGTTGCAAATGTGAGGCTACAGTTGAAGGGCAAAGGGGTTCAGAAAACGCCTGGTTCAAGCTCGATCGAAGTCGATGGAGTTATCCATGAGTTCACCTCAGGCGACAGATCACACCCAGAAAACTATGACATTGACATGATGCTAGAAGAAGTTACCTGCAGGCTAGGTGATGCTGGCTATGTTCCTGATCTAACCAATGTTATGCTTGATGTAAATGAGCAAAAGAAACAATACCTCCTCAACCGACATAGCGAGAGGCTAGTCATGGCTTACGGGCTTATAAGTACAGAAAAACATGTGAGGATTCGTGTTATAAAGCATCTCCGAATGTGCTATGAATTTGCCAAATACATTTCAGAAGTGTTTGATAGGGAAATGTTTGATAGGGAAATAACAGTACGAGACAATAATAGGTTTCACTTCTTTCAACATGGGTCCTGTTCATGTGGCGATTATTGGTAACATAATTCTCGGATAGAACAGAACTGTAAAAGAAAATATGCATCTTCAAAAATTTTGATTTACATTCGTTCTATGCAGAACTTAAGATTGTCTTTCTATCTGTAAGATACAAAAGAAAATGCAATCAACTACTTCACAGATAGACAGCAACTATGGACATAAGCAGCACAATGCTAGAACACGTTCTCTATCAGTTGATAAGAAACCTACAGATTTTAGAGAAATGTGA

mRNA sequence

ATGCTTGTCCAGGGTGTGTTCCCCATGGCCGCATGTCCAAATCATCCTCCCACTCGCTTTCCTTTCATGTCTTTAAAGCTTTCTAGTGTAATTTTCTTGTATCGCGCCAAATTTCAAGCCAATCGGAGTTCACACGGGCCCTCCGATGTTGCAAATGTGAGGCTACAGTTGAAGGGCAAAGGGGTTCAGAAAACGCCTGGTTCAAGCTCGATCGAAGTCGATGGAGTTATCCATGAGTTCACCTCAGGCGACAGATCACACCCAGAAAACTATGACATTGACATGATGCTAGAAGAAGTTACCTGCAGGCTAGGTGATGCTGGCTATGTTCCTGATCTAACCAATGTTATGCTTGATGTAAATGAGCAAAAGAAACAATACCTCCTCAACCGACATAGCGAGAGGCTAGTCATGGCTTACGGGCTTATAAGTACAGAAAAACATGTGAGGATTCGTGTTATAAAGCATCTCCGAATGTGCTATGAATTTGCCAAATACATTTCAGAAGTGTTTGATAGGGAAATGTTTGATAGGGAAATAACAATAGACAGCAACTATGGACATAAGCAGCACAATGCTAGAACACGTTCTCTATCAGTTGATAAGAAACCTACAGATTTTAGAGAAATGTGA

Coding sequence (CDS)

ATGCTTGTCCAGGGTGTGTTCCCCATGGCCGCATGTCCAAATCATCCTCCCACTCGCTTTCCTTTCATGTCTTTAAAGCTTTCTAGTGTAATTTTCTTGTATCGCGCCAAATTTCAAGCCAATCGGAGTTCACACGGGCCCTCCGATGTTGCAAATGTGAGGCTACAGTTGAAGGGCAAAGGGGTTCAGAAAACGCCTGGTTCAAGCTCGATCGAAGTCGATGGAGTTATCCATGAGTTCACCTCAGGCGACAGATCACACCCAGAAAACTATGACATTGACATGATGCTAGAAGAAGTTACCTGCAGGCTAGGTGATGCTGGCTATGTTCCTGATCTAACCAATGTTATGCTTGATGTAAATGAGCAAAAGAAACAATACCTCCTCAACCGACATAGCGAGAGGCTAGTCATGGCTTACGGGCTTATAAGTACAGAAAAACATGTGAGGATTCGTGTTATAAAGCATCTCCGAATGTGCTATGAATTTGCCAAATACATTTCAGAAGTGTTTGATAGGGAAATGTTTGATAGGGAAATAACAATAGACAGCAACTATGGACATAAGCAGCACAATGCTAGAACACGTTCTCTATCAGTTGATAAGAAACCTACAGATTTTAGAGAAATGTGA

Protein sequence

MLVQGVFPMAACPNHPPTRFPFMSLKLSSVIFLYRAKFQANRSSHGPSDVANVRLQLKGKGVQKTPGSSSIEVDGVIHEFTSGDRSHPENYDIDMMLEEVTCRLGDAGYVPDLTNVMLDVNEQKKQYLLNRHSERLVMAYGLISTEKHVRIRVIKHLRMCYEFAKYISEVFDREMFDREITIDSNYGHKQHNARTRSLSVDKKPTDFREM

Homology

[Close]

BLAST of Moc03g20600 vs. NCBI nr
Match: XP_022138268.1 (pentatricopeptide repeat-containing protein At3g22690 [Momordica charantia])

HSP 1 Score: 228.8 bits (582), Expect = 4.4e-56
Identity = 114/135 (84.44%), Postives = 125/135 (92.59%), Query Frame = 0


Query: 48  SDVANVRLQLKGKGVQKTPGSSSIEVDGVIHEFTSGDRSHPENYDIDMMLEEVTCRLGDA 107
           +DVANVRLQL+ KGVQKTPGSS IEVDGVIHEFTSGDRSHPENYDIDMMLEEVTCRLGDA
Sbjct: 691 ADVANVRLQLRDKGVQKTPGSSLIEVDGVIHEFTSGDRSHPENYDIDMMLEEVTCRLGDA 750

Query: 108 GYVPDLTNVMLDVNEQKKQYLLNRHSERLVMAYGLISTEKHVRIRVIKHLRM---CYEFA 167
           GYVPDLTNV+LDVNEQ+KQYLLNRHSE+L MAYGLISTEKHVRIRV+K+LRM   C+ FA
Sbjct: 751 GYVPDLTNVLLDVNEQEKQYLLNRHSEKLAMAYGLISTEKHVRIRVMKNLRMCSDCHAFA 810

Query: 168 KYISEVFDREMFDRE 180
           KYISEV+ RE+  R+
Sbjct: 811 KYISEVYGREITVRD 825

[Close]

BLAST of Moc03g20600 vs. NCBI nr
Match: XP_011650966.1 (pentatricopeptide repeat-containing protein At3g22690 [Cucumis sativus])

HSP 1 Score: 209.9 bits (533), Expect = 2.1e-50
Identity = 104/134 (77.61%), Postives = 119/134 (88.81%), Query Frame = 0


Query: 49  DVANVRLQLKGKGVQKTPGSSSIEVDGVIHEFTSGDRSHPENYDIDMMLEEVTCRLGDAG 108
           DVANVRLQLK KGVQK PGSSSI+VDGVIHEFTSGDRSHPENY IDMML E+T RLGD G
Sbjct: 690 DVANVRLQLKEKGVQKMPGSSSIQVDGVIHEFTSGDRSHPENYSIDMMLNEITSRLGDVG 749

Query: 109 YVPDLTNVMLDVNEQKKQYLLNRHSERLVMAYGLISTEKHVRIRVIKHLRM---CYEFAK 168
           YVPD+TNV+LDVNEQ+KQYLLNRHSE+L +AYGLIST+KHV IRV+K+LRM   C+ FAK
Sbjct: 750 YVPDVTNVLLDVNEQEKQYLLNRHSEKLAVAYGLISTKKHVPIRVMKNLRMCSDCHSFAK 809

Query: 169 YISEVFDREMFDRE 180
           YIS+V+ RE+  R+
Sbjct: 810 YISKVYHREITVRD 823

[Close]

BLAST of Moc03g20600 vs. NCBI nr
Match: XP_038877935.1 (pentatricopeptide repeat-containing protein At3g22690 [Benincasa hispida])

HSP 1 Score: 208.8 bits (530), Expect = 4.7e-50
Identity = 105/135 (77.78%), Postives = 120/135 (88.89%), Query Frame = 0


Query: 48  SDVANVRLQLKGKGVQKTPGSSSIEVDGVIHEFTSGDRSHPENYDIDMMLEEVTCRLGDA 107
           +DVANVRLQLK KGVQK PGSSSI+VDGVIHEFTSGDRSHPENY IDMML+E+  +LG A
Sbjct: 685 ADVANVRLQLKEKGVQKMPGSSSIQVDGVIHEFTSGDRSHPENYGIDMMLKEINIKLGVA 744

Query: 108 GYVPDLTNVMLDVNEQKKQYLLNRHSERLVMAYGLISTEKHVRIRVIKHLRM---CYEFA 167
           GYVPD TNV+LDVNEQ+KQYLLNRHSE+L MAYGLISTEK+V IRVIK+LRM   C+ FA
Sbjct: 745 GYVPDTTNVLLDVNEQEKQYLLNRHSEKLAMAYGLISTEKYVPIRVIKNLRMCSDCHAFA 804

Query: 168 KYISEVFDREMFDRE 180
           KYISEV++RE+  R+
Sbjct: 805 KYISEVYEREITVRD 819

[Close]

BLAST of Moc03g20600 vs. NCBI nr
Match: XP_022951052.1 (pentatricopeptide repeat-containing protein At3g22690 [Cucurbita moschata])

HSP 1 Score: 205.7 bits (522), Expect = 4.0e-49
Identity = 103/135 (76.30%), Postives = 121/135 (89.63%), Query Frame = 0


Query: 48  SDVANVRLQLKGKGVQKTPGSSSIEVDGVIHEFTSGDRSHPENYDIDMMLEEVTCRLGDA 107
           +DVANVRL LKGKGV+KTPGSSSIEVDGVI+EFTSGDRSHPE   IDMML+E+T RLGDA
Sbjct: 689 ADVANVRLHLKGKGVRKTPGSSSIEVDGVIYEFTSGDRSHPETCLIDMMLKEITNRLGDA 748

Query: 108 GYVPDLTNVMLDVNEQKKQYLLNRHSERLVMAYGLISTEKHVRIRVIKHLRM---CYEFA 167
           GYVPDLTNV+LDVNEQ+KQYLLN+HSE+L MAYGLIST+KH+ IRVIK+LR    C+ FA
Sbjct: 749 GYVPDLTNVLLDVNEQEKQYLLNQHSEKLAMAYGLISTKKHLPIRVIKNLRTCSDCHAFA 808

Query: 168 KYISEVFDREMFDRE 180
           KY+S+V+DRE+  R+
Sbjct: 809 KYVSKVYDREITIRD 823

[Close]

BLAST of Moc03g20600 vs. NCBI nr
Match: KAA0049341.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK17216.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 205.7 bits (522), Expect = 4.0e-49
Identity = 102/134 (76.12%), Postives = 118/134 (88.06%), Query Frame = 0


Query: 49  DVANVRLQLKGKGVQKTPGSSSIEVDGVIHEFTSGDRSHPENYDIDMMLEEVTCRLGDAG 108
           DVANVRLQLK KGVQK PGSSSI+VDGVIHEFTSGDRSHPENY +DMML E+T RL D G
Sbjct: 690 DVANVRLQLKEKGVQKMPGSSSIQVDGVIHEFTSGDRSHPENYGMDMMLNEITSRLVDVG 749

Query: 109 YVPDLTNVMLDVNEQKKQYLLNRHSERLVMAYGLISTEKHVRIRVIKHLRM---CYEFAK 168
           YVPD+TNV+LDVNEQ+K+YLLNRHSE+L MAYGLIST+KHV IRV+K+LRM   C+ FAK
Sbjct: 750 YVPDVTNVLLDVNEQEKKYLLNRHSEKLAMAYGLISTKKHVPIRVMKNLRMCSDCHSFAK 809

Query: 169 YISEVFDREMFDRE 180
           YIS+V+ RE+  R+
Sbjct: 810 YISKVYHREIIVRD 823

[Close]

BLAST of Moc03g20600 vs. ExPASy Swiss-Prot
Match: Q9LUJ2 (Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H56 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 5.8e-35
Identity = 71/135 (52.59%), Postives = 106/135 (78.52%), Query Frame = 0


Query: 48  SDVANVRLQLKGKGVQKTPGSSSIEVDGVIHEFTSGDRSHPENYDIDMMLEEVTCRLGDA 107
           +D+A VRL +K KG++K PG+SSI++ G  HEFTSGD SHPE  +I+ ML+EV+ R    
Sbjct: 690 NDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHL 749

Query: 108 GYVPDLTNVMLDVNEQKKQYLLNRHSERLVMAYGLISTEKHVRIRVIKHLRM---CYEFA 167
           G+VPDL+NV++DV+E++K ++L+RHSE+L MAYGLIS+ K   IR++K+LR+   C+ FA
Sbjct: 750 GHVPDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFA 809

Query: 168 KYISEVFDREMFDRE 180
           K+ S+V++RE+  R+
Sbjct: 810 KFASKVYNREIILRD 824

[Close]

BLAST of Moc03g20600 vs. ExPASy Swiss-Prot
Match: Q9LN01 (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 9.9e-27
Identity = 60/137 (43.80%), Postives = 92/137 (67.15%), Query Frame = 0


Query: 48  SDVANVRLQLKGKGVQKTPGSSSIEVDGVIHEFTSGDRSHPENYDIDMMLEEVTCRLGDA 107
           ++VA  R  L  KG++K PG SSIE+D V+HEF  GD+ HP N +I  MLEE+   L  A
Sbjct: 589 NEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKA 648

Query: 108 GYVPDLTNVMLDVNEQKKQYLLNRHSERLVMAYGLISTEKHVRIRVIKHLRM---CYEFA 167
           G+VPD + V+ ++ E+ K+  L  HSE+L +A+GLIST+   ++ ++K+LR+   C+E  
Sbjct: 649 GFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEAT 708

Query: 168 KYISEVFDREMFDREIT 182
           K IS+++ RE+  R+ T
Sbjct: 709 KLISKIYKREIIARDRT 725

[Close]

BLAST of Moc03g20600 vs. ExPASy Swiss-Prot
Match: Q9FND7 (Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H14 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 9.2e-25
Identity = 56/134 (41.79%), Postives = 95/134 (70.90%), Query Frame = 0


Query: 49  DVANVRLQLKGKGVQKTPGSSSIEVDGVIHEFTSGDRSHPENYDIDMMLEEVTCRLGDAG 108
           +V++VR  +K KGV+K PG S +EV+G +HEF  GD+SHP+   ID + ++++ RL  AG
Sbjct: 461 NVSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHPKYTQIDAVWKDISRRLRLAG 520

Query: 109 YVPDLTNVMLDVNEQKKQYLLNRHSERLVMAYGLISTEKHVRIRVIKHLRM---CYEFAK 168
           Y  D T VM D++E++K+  L  HSE+  +A+G++S ++ V IR++K+LR+   C++ + 
Sbjct: 521 YKADTTPVMFDIDEEEKEDALCLHSEKAAIAFGIMSLKEDVPIRIVKNLRVCGDCHQVSM 580

Query: 169 YISEVFDREMFDRE 180
            IS++F+RE+  R+
Sbjct: 581 MISKIFNREIIVRD 594

[Close]

BLAST of Moc03g20600 vs. ExPASy Swiss-Prot
Match: B8YEK4 (Pentatricopeptide repeat-containing protein OGR1, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=OGR1 PE=2 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 4.6e-24
Identity = 56/134 (41.79%), Postives = 87/134 (64.93%), Query Frame = 0


Query: 49  DVANVRLQLKGKGVQKTPGSSSIEVDGVIHEFTSGDRSHPENYDIDMMLEEVTCRLGDAG 108
           DV  VR  ++   V+K PG S  E+DGV+H+F +GD+ HP   +I   LE++  R+ + G
Sbjct: 436 DVGRVRDTMRSNDVRKVPGFSYTEIDGVMHKFINGDKEHPRWQEIYRALEDIVSRISELG 495

Query: 109 YVPDLTNVMLDVNEQKKQYLLNRHSERLVMAYGLISTEKHVRIRVIKHLRM---CYEFAK 168
           Y P+ +NV+ D+ E++KQY L  HSE+L +A+GLI+T     +RVIK+LR+   C+  AK
Sbjct: 496 YEPETSNVLHDIGEEEKQYALCYHSEKLAIAFGLIATPPGETLRVIKNLRICGDCHVVAK 555

Query: 169 YISEVFDREMFDRE 180
            IS+ + R +  R+
Sbjct: 556 LISKAYGRVIVIRD 569

[Close]

BLAST of Moc03g20600 vs. ExPASy Swiss-Prot
Match: O82380 (Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H33 PE=2 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 4.6e-24
Identity = 60/135 (44.44%), Postives = 91/135 (67.41%), Query Frame = 0


Query: 49  DVANVRLQLKGKGVQKTPGSSSIEVDGVIHEFTSGDRSHPENYDIDMMLEEVTCRLGDAG 108
           +V+ +R  ++  G++K PG SSIE+DG+IHEF SGD +HP +  +   L EV  +L   G
Sbjct: 586 NVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNG 645

Query: 109 YVPDLTNVMLDVNEQK-KQYLLNRHSERLVMAYGLISTEKHVRIRVIKHLRM---CYEFA 168
           Y P+++ V+  + E++ K+  LN HSE+L + YGLISTE    IRVIK+LR+   C+  A
Sbjct: 646 YEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKVIRVIKNLRVCGDCHSVA 705

Query: 169 KYISEVFDREMFDRE 180
           K IS+++DRE+  R+
Sbjct: 706 KLISQLYDREIIVRD 720

[Close]

BLAST of Moc03g20600 vs. ExPASy TrEMBL
Match: A0A6J1CCK6 (pentatricopeptide repeat-containing protein At3g22690 OS=Momordica charantia OX=3673 GN=LOC111009484 PE=3 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 2.1e-56
Identity = 114/135 (84.44%), Postives = 125/135 (92.59%), Query Frame = 0


Query: 48  SDVANVRLQLKGKGVQKTPGSSSIEVDGVIHEFTSGDRSHPENYDIDMMLEEVTCRLGDA 107
           +DVANVRLQL+ KGVQKTPGSS IEVDGVIHEFTSGDRSHPENYDIDMMLEEVTCRLGDA
Sbjct: 691 ADVANVRLQLRDKGVQKTPGSSLIEVDGVIHEFTSGDRSHPENYDIDMMLEEVTCRLGDA 750

Query: 108 GYVPDLTNVMLDVNEQKKQYLLNRHSERLVMAYGLISTEKHVRIRVIKHLRM---CYEFA 167
           GYVPDLTNV+LDVNEQ+KQYLLNRHSE+L MAYGLISTEKHVRIRV+K+LRM   C+ FA
Sbjct: 751 GYVPDLTNVLLDVNEQEKQYLLNRHSEKLAMAYGLISTEKHVRIRVMKNLRMCSDCHAFA 810

Query: 168 KYISEVFDREMFDRE 180
           KYISEV+ RE+  R+
Sbjct: 811 KYISEVYGREITVRD 825

[Close]

BLAST of Moc03g20600 vs. ExPASy TrEMBL
Match: A0A0A0LA65 (DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G146420 PE=3 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 1.0e-50
Identity = 104/134 (77.61%), Postives = 119/134 (88.81%), Query Frame = 0


Query: 49  DVANVRLQLKGKGVQKTPGSSSIEVDGVIHEFTSGDRSHPENYDIDMMLEEVTCRLGDAG 108
           DVANVRLQLK KGVQK PGSSSI+VDGVIHEFTSGDRSHPENY IDMML E+T RLGD G
Sbjct: 690 DVANVRLQLKEKGVQKMPGSSSIQVDGVIHEFTSGDRSHPENYSIDMMLNEITSRLGDVG 749

Query: 109 YVPDLTNVMLDVNEQKKQYLLNRHSERLVMAYGLISTEKHVRIRVIKHLRM---CYEFAK 168
           YVPD+TNV+LDVNEQ+KQYLLNRHSE+L +AYGLIST+KHV IRV+K+LRM   C+ FAK
Sbjct: 750 YVPDVTNVLLDVNEQEKQYLLNRHSEKLAVAYGLISTKKHVPIRVMKNLRMCSDCHSFAK 809

Query: 169 YISEVFDREMFDRE 180
           YIS+V+ RE+  R+
Sbjct: 810 YISKVYHREITVRD 823

[Close]

BLAST of Moc03g20600 vs. ExPASy TrEMBL
Match: A0A5D3D302 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G00650 PE=3 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.9e-49
Identity = 102/134 (76.12%), Postives = 118/134 (88.06%), Query Frame = 0


Query: 49  DVANVRLQLKGKGVQKTPGSSSIEVDGVIHEFTSGDRSHPENYDIDMMLEEVTCRLGDAG 108
           DVANVRLQLK KGVQK PGSSSI+VDGVIHEFTSGDRSHPENY +DMML E+T RL D G
Sbjct: 690 DVANVRLQLKEKGVQKMPGSSSIQVDGVIHEFTSGDRSHPENYGMDMMLNEITSRLVDVG 749

Query: 109 YVPDLTNVMLDVNEQKKQYLLNRHSERLVMAYGLISTEKHVRIRVIKHLRM---CYEFAK 168
           YVPD+TNV+LDVNEQ+K+YLLNRHSE+L MAYGLIST+KHV IRV+K+LRM   C+ FAK
Sbjct: 750 YVPDVTNVLLDVNEQEKKYLLNRHSEKLAMAYGLISTKKHVPIRVMKNLRMCSDCHSFAK 809

Query: 169 YISEVFDREMFDRE 180
           YIS+V+ RE+  R+
Sbjct: 810 YISKVYHREIIVRD 823

[Close]

BLAST of Moc03g20600 vs. ExPASy TrEMBL
Match: A0A6J1GGL0 (pentatricopeptide repeat-containing protein At3g22690 OS=Cucurbita moschata OX=3662 GN=LOC111454012 PE=3 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.9e-49
Identity = 103/135 (76.30%), Postives = 121/135 (89.63%), Query Frame = 0


Query: 48  SDVANVRLQLKGKGVQKTPGSSSIEVDGVIHEFTSGDRSHPENYDIDMMLEEVTCRLGDA 107
           +DVANVRL LKGKGV+KTPGSSSIEVDGVI+EFTSGDRSHPE   IDMML+E+T RLGDA
Sbjct: 689 ADVANVRLHLKGKGVRKTPGSSSIEVDGVIYEFTSGDRSHPETCLIDMMLKEITNRLGDA 748

Query: 108 GYVPDLTNVMLDVNEQKKQYLLNRHSERLVMAYGLISTEKHVRIRVIKHLRM---CYEFA 167
           GYVPDLTNV+LDVNEQ+KQYLLN+HSE+L MAYGLIST+KH+ IRVIK+LR    C+ FA
Sbjct: 749 GYVPDLTNVLLDVNEQEKQYLLNQHSEKLAMAYGLISTKKHLPIRVIKNLRTCSDCHAFA 808

Query: 168 KYISEVFDREMFDRE 180
           KY+S+V+DRE+  R+
Sbjct: 809 KYVSKVYDREITIRD 823

[Close]

BLAST of Moc03g20600 vs. ExPASy TrEMBL
Match: A0A1S3AXK0 (LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g22690 OS=Cucumis melo OX=3656 GN=LOC103483689 PE=3 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 9.5e-49
Identity = 101/134 (75.37%), Postives = 117/134 (87.31%), Query Frame = 0


Query: 49  DVANVRLQLKGKGVQKTPGSSSIEVDGVIHEFTSGDRSHPENYDIDMMLEEVTCRLGDAG 108
           DVANVRLQLK KGVQK PGSSSI+VDGVIHEFTSGDRSHPENY +DMML E+T RL D G
Sbjct: 690 DVANVRLQLKEKGVQKMPGSSSIQVDGVIHEFTSGDRSHPENYGMDMMLNEITSRLVDVG 749

Query: 109 YVPDLTNVMLDVNEQKKQYLLNRHSERLVMAYGLISTEKHVRIRVIKHLRM---CYEFAK 168
           YVP++TNV+LDVNEQ+K YLLNRHSE+L MAYGLIST+KHV IRV+K+LRM   C+ FAK
Sbjct: 750 YVPEVTNVLLDVNEQEKXYLLNRHSEKLAMAYGLISTKKHVPIRVMKNLRMCSDCHSFAK 809

Query: 169 YISEVFDREMFDRE 180
           YIS+V+ RE+  R+
Sbjct: 810 YISKVYHREIIVRD 823

[Close]

BLAST of Moc03g20600 vs. TAIR 10
Match: AT3G22690.1 (CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881), Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1); Has 49784 Blast hits to 14716 proteins in 280 species: Archae - 2; Bacteria - 10; Metazoa - 107; Fungi - 167; Plants - 48594; Viruses - 0; Other Eukaryotes - 904 (source: NCBI BLink). )

HSP 1 Score: 149.1 bits (375), Expect = 4.1e-36
Identity = 71/135 (52.59%), Postives = 106/135 (78.52%), Query Frame = 0


Query: 48  SDVANVRLQLKGKGVQKTPGSSSIEVDGVIHEFTSGDRSHPENYDIDMMLEEVTCRLGDA 107
           +D+A VRL +K KG++K PG+SSI++ G  HEFTSGD SHPE  +I+ ML+EV+ R    
Sbjct: 690 NDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHL 749

Query: 108 GYVPDLTNVMLDVNEQKKQYLLNRHSERLVMAYGLISTEKHVRIRVIKHLRM---CYEFA 167
           G+VPDL+NV++DV+E++K ++L+RHSE+L MAYGLIS+ K   IR++K+LR+   C+ FA
Sbjct: 750 GHVPDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFA 809

Query: 168 KYISEVFDREMFDRE 180
           K+ S+V++RE+  R+
Sbjct: 810 KFASKVYNREIILRD 824

[Close]

BLAST of Moc03g20600 vs. TAIR 10
Match: AT3G22690.2 (INVOLVED IN: photosystem II assembly, regulation of chlorophyll biosynthetic process, photosystem I assembly, thylakoid membrane organization, RNA modification; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1). )

HSP 1 Score: 149.1 bits (375), Expect = 4.1e-36
Identity = 71/135 (52.59%), Postives = 106/135 (78.52%), Query Frame = 0


Query: 48  SDVANVRLQLKGKGVQKTPGSSSIEVDGVIHEFTSGDRSHPENYDIDMMLEEVTCRLGDA 107
           +D+A VRL +K KG++K PG+SSI++ G  HEFTSGD SHPE  +I+ ML+EV+ R    
Sbjct: 690 NDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHL 749

Query: 108 GYVPDLTNVMLDVNEQKKQYLLNRHSERLVMAYGLISTEKHVRIRVIKHLRM---CYEFA 167
           G+VPDL+NV++DV+E++K ++L+RHSE+L MAYGLIS+ K   IR++K+LR+   C+ FA
Sbjct: 750 GHVPDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFA 809

Query: 168 KYISEVFDREMFDRE 180
           K+ S+V++RE+  R+
Sbjct: 810 KFASKVYNREIILRD 824

[Close]

BLAST of Moc03g20600 vs. TAIR 10
Match: AT1G08070.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 121.7 bits (304), Expect = 7.0e-28
Identity = 60/137 (43.80%), Postives = 92/137 (67.15%), Query Frame = 0


Query: 48  SDVANVRLQLKGKGVQKTPGSSSIEVDGVIHEFTSGDRSHPENYDIDMMLEEVTCRLGDA 107
           ++VA  R  L  KG++K PG SSIE+D V+HEF  GD+ HP N +I  MLEE+   L  A
Sbjct: 589 NEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKA 648

Query: 108 GYVPDLTNVMLDVNEQKKQYLLNRHSERLVMAYGLISTEKHVRIRVIKHLRM---CYEFA 167
           G+VPD + V+ ++ E+ K+  L  HSE+L +A+GLIST+   ++ ++K+LR+   C+E  
Sbjct: 649 GFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEAT 708

Query: 168 KYISEVFDREMFDREIT 182
           K IS+++ RE+  R+ T
Sbjct: 709 KLISKIYKREIIARDRT 725

[Close]

BLAST of Moc03g20600 vs. TAIR 10
Match: AT5G40405.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 115.2 bits (287), Expect = 6.6e-26
Identity = 56/134 (41.79%), Postives = 95/134 (70.90%), Query Frame = 0


Query: 49  DVANVRLQLKGKGVQKTPGSSSIEVDGVIHEFTSGDRSHPENYDIDMMLEEVTCRLGDAG 108
           +V++VR  +K KGV+K PG S +EV+G +HEF  GD+SHP+   ID + ++++ RL  AG
Sbjct: 461 NVSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHPKYTQIDAVWKDISRRLRLAG 520

Query: 109 YVPDLTNVMLDVNEQKKQYLLNRHSERLVMAYGLISTEKHVRIRVIKHLRM---CYEFAK 168
           Y  D T VM D++E++K+  L  HSE+  +A+G++S ++ V IR++K+LR+   C++ + 
Sbjct: 521 YKADTTPVMFDIDEEEKEDALCLHSEKAAIAFGIMSLKEDVPIRIVKNLRVCGDCHQVSM 580

Query: 169 YISEVFDREMFDRE 180
            IS++F+RE+  R+
Sbjct: 581 MISKIFNREIIVRD 594

[Close]

BLAST of Moc03g20600 vs. TAIR 10
Match: AT2G29760.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 112.8 bits (281), Expect = 3.3e-25
Identity = 60/135 (44.44%), Postives = 91/135 (67.41%), Query Frame = 0


Query: 49  DVANVRLQLKGKGVQKTPGSSSIEVDGVIHEFTSGDRSHPENYDIDMMLEEVTCRLGDAG 108
           +V+ +R  ++  G++K PG SSIE+DG+IHEF SGD +HP +  +   L EV  +L   G
Sbjct: 586 NVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNG 645

Query: 109 YVPDLTNVMLDVNEQK-KQYLLNRHSERLVMAYGLISTEKHVRIRVIKHLRM---CYEFA 168
           Y P+++ V+  + E++ K+  LN HSE+L + YGLISTE    IRVIK+LR+   C+  A
Sbjct: 646 YEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKVIRVIKNLRVCGDCHSVA 705

Query: 169 KYISEVFDREMFDRE 180
           K IS+++DRE+  R+
Sbjct: 706 KLISQLYDREIIVRD 720

The following BLAST results are available for this feature:

BLAST of Moc03g20600 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022138268.1	4.4e-56	84.44	pentatricopeptide repeat-containing protein At3g22690 [Momordica charantia]	[more]
XP_011650966.1	2.1e-50	77.61	pentatricopeptide repeat-containing protein At3g22690 [Cucumis sativus]	[more]
XP_038877935.1	4.7e-50	77.78	pentatricopeptide repeat-containing protein At3g22690 [Benincasa hispida]	[more]
XP_022951052.1	4.0e-49	76.30	pentatricopeptide repeat-containing protein At3g22690 [Cucurbita moschata]	[more]
KAA0049341.1	4.0e-49	76.12	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK17216...	[more]

BLAST of Moc03g20600 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LUJ2	5.8e-35	52.59	Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana OX...	[more]
Q9LN01	9.9e-27	43.80	Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop...	[more]
Q9FND7	9.2e-25	41.79	Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis th...	[more]
B8YEK4	4.6e-24	41.79	Pentatricopeptide repeat-containing protein OGR1, mitochondrial OS=Oryza sativa ...	[more]
O82380	4.6e-24	44.44	Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidop...	[more]

BLAST of Moc03g20600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CCK6	2.1e-56	84.44	pentatricopeptide repeat-containing protein At3g22690 OS=Momordica charantia OX=...	[more]
A0A0A0LA65	1.0e-50	77.61	DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G1464...	[more]
A0A5D3D302	1.9e-49	76.12	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A6J1GGL0	1.9e-49	76.30	pentatricopeptide repeat-containing protein At3g22690 OS=Cucurbita moschata OX=3...	[more]
A0A1S3AXK0	9.5e-49	75.37	LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g22690 OS=Cu...	[more]

BLAST of Moc03g20600 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G22690.1	4.1e-36	52.59	CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012...	[more]
AT3G22690.2	4.1e-36	52.59	INVOLVED IN: photosystem II assembly, regulation of chlorophyll biosynthetic pro...	[more]
AT1G08070.1	7.0e-28	43.80	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G40405.1	6.6e-26	41.79	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G29760.1	3.3e-25	44.44	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032867	DYW domain	PFAM	PF14432	DYW_deaminase	coord: 66..176 e-value: 9.2E-24 score: 83.7
None	No IPR available	PANTHER	PTHR47926:SF215	BNAC05G29820D PROTEIN	coord: 48..184
None	No IPR available	PANTHER	PTHR47926	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 48..184

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc03g20600.1	Moc03g20600.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0008270	zinc ion binding