Moc03g19220 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc03g19220
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	DNA-directed RNA polymerase subunit
Location	chr3: 12905180 .. 12918771 (-)
RNA-Seq Expression	Moc03g19220
Synteny	Moc03g19220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATAGAGCGCAAGTGGAAGGTCTGGTGTTCACTAAAGAACCATACATTGAGGATGTTGGACCTCGTAAAATGTAAGATTAATTGGTTTCTAATCATCATATTAAGATGCTGGTTATTATTAGTCTATAATCTTTTATGTCTATTTTTTTGTTTGGCTCTTTCTGTAGCAAGAGTATGCAGTTTACTACGTTCTCCGGATCTGAAATTAGCAAAATGGCTGAAGTTCAGGTGTACAAAGGCTTATATTATGATACCACTCGGAAACCCATTGAGGGCGGCTTGTTGGATCCTCGAATGGTACAATTGCTTTCTTATATTCTCATGGGTGATTGGAGGTTCATGTTCATTAAGTTTAGTTTTTTTTACCTTTTTTTTTTATTATCAATCATAATAAACAACTACGGACTGAATCTAGCTGCTGTATTTGACTACCACAATTAATGATATACACTAATGCTCTCCCTCAAGATGGAGAAGGAATGGAATTGTTTGGCCCAAGATTGAGAGTTGAGTTGTAGTATTGTATAATGTTGACCTATGTAGAATGAAAGCCAATGTCTATATATTTTAGACGCTCAAGAAAGCTAGATGGGATACAATGTAGAATTAGATGCATAATTTTCATGAATAGCAAGGCTGTAAGTGACAAAATCTAGAAGTTGTTGATCAGTTAACTAACTCATTTGCAACAACTGAAATCTATACTTCCCCAATTTCAATCTTCGTTCGATCGGTTTAGCCTAGTTAAGTTTAAAGCCTCTCAGTGGTTGAGAACTATTATTCTTCTCTTATTTGTTGTAATTGGGGTACTTTTTGTTCCCATTTTTAGTTTTTTCTGTTTATCGTTCACTCTTTCGAGAGTTTGTATCGTTGAACATTTTTGTTCCTTTTTATTATTTCAACAAGAAGTTCGTTTCTTGGTAAAAAAGAAAAATTGAAGTCTATACTAAGCCTTTGGTGAAGATGAGTAGTCATTGGTTGCTTCTTAGCCTTCTGAGAACTGTTGAACTCTGCAAAAAATATCAAAACCACGGGTGATTTGTGAGTGTCTAAATAGAATATGCAACTAGATTTGACCAAATATCTTGAGTCGGACAAAATACATGCTTTTTAAGAGAGAGAAGAGAGCAAACCATTGCTAGGAAACCCAATGTTCTCTCCGTACTCTTCTCCCTCCCCAACCATCAACCAACCAGCCACCCACCCCCACCACCCCACCGCAGCCGGTAACCATGGCCTTCTCTTCCCCTAGCTACCTTATCCCATCCCCTACCCGCCTCTCCCACCCTTCTACCGAACATAATGAACACTTGAAACTACCCTGCCCGTAAAGCTAAGATAGAGTGTAAAACCTTCTCGATCAAGGTTGATGATTTCTTCTGAGGGAGTCGTGCCCGCTTATTCTAGATTGGAAGGGATGTCACCTACTCCCTTTCCCTGACTTGGGCATTCATCTACTGGCTTTCTTCATCTATCAACCTACTGCTAGACTCCTCACTCACACACAAATTCTTCAAAGAACACCGTAGTGATGACTACACCCTTTGGATTGAGAAGTTGAGCAACAAGAAAGGCTATTGGCTTGAGATTAACGAGCTTGACAGTAATGGAGGCAAGAATAGGATTATGCTTCCTTATGGTGTTGGAAAGGATGGATGGAAGGCATTTTACAATCTCCTCCATAACTACCCCTCTGATGACAAACCTAAGGCACACTGCCTTTCTATCGGGGATCATTTAAACCACCCTTCTCTTCAACAGAACCCTATTTCTAATGAGCAGTCGCCGACCATTTACAACCAAACCACAGATTCTCCCTCAAAATCGACCTTGATCCCTAAAATCTTCGAATGGAGTCGTGGATCATTGTTCAATGTCATTCCTTACATGATGATTGGTACTCCATCCTTCAGACCATTCAAGAGTCGCTGAGTGACTTCTGCTCCATCAACCTCATTCACCCTGATATAGCCCTCCTCAGATGTGAAGATGACAAACAAGCCATTGCACTCACCTTCACTGACGATTGGCAAACCTTTGGCCATGCAAACTTCACTTCCTTATATGGAGCACGAAGAATATAAACTCCAATCGTCAAGTTCCATCTTATGGAGTTTGGATCACAATCCGGGATCTTACCCTTCATCTGTGGACCGATACCATCATCCCCTACATCAGTGACAAGTGCAGTGGATTCTTAGAAATATCGAAGGCAGCTTCAAACCTTAGAGATCTTATGGAACTGAGGATTAAGATCAGAAACAACGGCTATGGCTTCATTCCAGCGACTGTAGAGATCCCATCTGCCATTACACATGAAGATGACCTCCTTGTTCACATTGATCCTTTCTTCATTGCCAGTAATTTGATCGGAAATCGTAGACCTGCCAATAAGGCCCCAGGACAACCATACAACAACATTGCCGGAGCTAGCCATCCCCGCTGTCAAACTCCCTCCGGCGCGGTTTGCATCGAGACTGCTGCTATTGGGCTCGAAAACCAAGGTGCAAGGCCATTTGCCTCTGCTGCACGTAATCATTTGACAGGGATGTGGACCCATCACGAAATTCTCTGTCCTTGACAAAAGGAAAAGCACAAGTCAATGACCACCCTGCCTCCTCTGCCCTGCCCCCTACTGTCATGGTACAAAGCCATTAATTATCAATAAAGGTAGGGATCACGTGAGACGTGACTGTACGGGAGAAACACTACCCATCCCCTCTCTTCCAAAAACGGAAACCTCGATTTATCCAAGACAGCCCCACCTTTGATGGCCACGATGAAATGAACTATTTCTCTAGCCCTCTTCCCGAGGATAGTCCAATCCTACCCATCTGCAACAACCCTAATACTCCTATTACCCCCACCATCCTTTTTGGTGATTTGCCAATCCTCGAGGCCACTGACACTCTCTGGTGTAAACCAATTCTTGAAGAAAACTCTTTATTCTGATTCTGCCTTGTACAAAGGAGTGGGTTGGCTATTTATAAGAGACCAACCAAGGACTAAAGCATACTTAACTAAAACGAACTAACTAAAACAGAAAGTACTAAGACTAACTCTTATATAACATAAGGTAACTTAACGGATTACATCAAACTCCCTCTTTGTTGAAGAAAAACTCGTTCTCGAGTTTAGTTGGCCAATGTAAATGCGTCTTCAGCTCGATACTTATACAGATCTGCAACATTGAAGACTGGAGTGATCCTTAGATCAGTAGGAAGGTTGATTCGGTATGCATTGTCGCCATACTTTTTAAGTATTTCAAATAGGCCAATCTTTTTGTCACTGAGTTTGCTGTAAGTCCCTGTTGGAAATCTGGATTTCTTTAAATGAACCATGACCAAATCCCCCTCCTCAAATGTCTTCACTCTTCGGTGGGCATCTACTGCTGCTTTGTTGGCCGCTGCAGCCTTGGTAAGAATCTTCGTTACTTCCTTGTGTAGTTCTACTATTCTTTCCGCCATTTCCTCAGCTTCCTGATTCAAGTCAATAGAAGAGGGAAGATGAGCTAGGTCCACAGTAAGCCTAGGTAATTTTGTATAAACAACTTCAAAGGGAGACTTCCCTGTCGAACGGTTGCGCATATGGTTAGATGCAAATTCTGCTTGAGCCATGTAAGGTCCCATTGCTTCGGTTTGCTCCCCCCTAAGCATCGTATTAGATTGCCGAGGGTGCGATTTGTTACCTCCGTCTGCCCATCCGTTTGTGGATGGCTGGTAGTACTAAATTTGAGGCTGGTGTCAAATTTCTTCCATAGGGTTTTCCAAAAACGACTCAGAAATTTGACATCACGGTCGGACACTATTGTTTTTGGTATGCTGTGTAAACGGACAATCTCTCGGAAGAACAGATTAGCCACATATATAGCATCCGAAGTTTTTTTACATGGTAAGAAGGGAGACATTTTACTAAACCGGTCAACCACGACCCAGACAGAGTCATATCCTCGTTGTATTTTTGGTAATCCCAGAACGAAATCCATAGAAAGATCTTCCCAAATAGTTGTAGGGATAGGGAGAGGGCAGTATAATCCCGTATTATGAGATTGACCCTTGGCTTTTTGGCAAATATTGCATCTGTTGACAAAATTATTAACATCTTTTCTCAACTGTGGCAAAAAAAAAAAAAAAACGAGCAGCCACTAGTTCATATGTTTTGTCTCTTGCCTAAATGCCTAGCCAATCCTCCGCTATGTAAATCTTGGATCAATATCTCCCTTAAAGATGTGTGTGGGATACATAAACGGTCCCCTTAAAGAGGTACCCATCAAGGATATGGAAATCATTGTTGTTAACATGCTCATGGCATTGGAGCCAAATAGTATGAAAGTCACTGTCATGTTCATATGTATTTGGTAAATGACCAAAGGCAATTACTCGTCCAGTGAGTAGAGTTAATAGGCTAGCCTTCCTACTAAGAGCATCAATAACTTTGTTAGTTGTTCCAGCTTTATGTTTGATTACAAAATCAAATTTTTGAAGAAAAGCAATCCACCTAGCATGCATTCTATTAATTGTTTTTTGTGTTTGTATGTATTTAAGAGAGAAATGGTCCGTGAATAGTATGAATTCCTTGCCAATTAGATAGCGTTCCCACTGTTTGAGAGTTCTAATTAAAGCAGAAAGTTCTTGTTCGTAAGTACACCACTTTTGTCTAGGCGGGGTAAGCTTTTCACTAAAGTATTCTATTGGGTGGTTCCGTAACTTCCGTCGGGACAACACAGGCCCTATGCCAATTCCTGAAGCATCTACGACAACTTCAAAGGGGTGGGAAAAGTCAGGTAGGGTCAAAATGGGTGTGGAACTAAGCTTTTGTTTCAGAGTTTGGAAGCTAATGTCTTGTTCCTTATCCCAACCGAATTTACCTTTTTTCAGGGCATTTGTTAATGGGGCTGCAATAGAGCTAAAATGTCGGATAAATTTATGATAAAAGGATGCCAAGCCTAGGAAACATTGAATATCCCTAACAGATGTGGGAGTAGGCCAGTTTTGAATAGATTCAACCTTTGAAGGGTCGACCGAGATACCATGTTTTGATATATAAAAGCCTAGGAATGCTATTTCACTAGTGAGGAAGGAGCATTTAGCTAGGTTAATGTATACCTGATTGTCTTGAAGAGCTTGAAATAAGGTTTGTAAGTGTGTTAAGTGATCATCAACTGTTTTACTATAGACAAGTATGTCATTGAAATAAACTACGATAAAGTTATTAAGAAAAGGACGTAAAACCTGGTTCATGAGGCGCATGAAAGTGCTCGGTGTGTTAGATTACCCAAAAGGCATCACGAGCCATTCAAATAGCCCTTAATTTGTTTTGAAGGCTGTTTTCCACTCGTCGCCAGGTCTGATCCGTATTTGGTGATAGCCACTCTTTAGGTCTACCTTTGAAAACAGCTGTGCTCCACTAAGTTGATCCAAAAGGCCAGACTGTCGAGATAGGAAATCTATATTTGATTGTGATCTTGTTTATAGCTCGGCTATCGACACACATCTGCCACGAACCATCTTTTTTAGGTGCCAATAACACAGGCATTGGACAGGGACTAAGGCTCGGTCGTATGTGTCCCTTGAGAAGAAGGTCATTGACTTGGTCTTGTAGAATCTGATACTCAGTGGGACTCGTACGATAGTGTGGTAAATGGGGGGTAAGGAGGCACCAGGGATAAGGTCGATGCAGTGCTGTATATCACGCAAAGGAGGTAAGCTCGAGGGGTCTTGTGTCAAGTTAGCAAAATTATCCAATAGGTGCTGAATATCCGGGTGATGGTGGGCATGAGGCGTAGGATTTGAGTCACCTTTGACCACCAACACCCATATCAAAGGGTCGCCCTTTGAATAAATGACTTACCATTAAAAATGGTAAATAGTTGCTTAGAAGGAGAAGGTGATTCTTTCCGGGTCTTGTGATCCAACGTCGAAGGCAATAGAAAAATTTTCTTGCCCATCCAGTGAAATTCATAAGTGTTTTCCCTGCCCTTATGTATAGCTTGGAGATCATATTGCCAAGGACGGCCCAAGAGAATGTGACAAGCATCCATATCGATGACATCACACACAATCTGATCACGATATTGGTTACCAATGCTTAAGGGTAAGAAGAAATGGATGTCTCACCCCCTTTCCGAATCCACGAAACTTTATATGGATGGGTGTGTGCATCAACTTTGAGGTTAAGGGCAAAGACTAACTTATGAGAAACCATGTTCTCACTGCTGCCACAATCGATGATGATGTTGCACACTTTTCCGTTCACAGTACAACGGGTACGGAAGAGGGCATGTCACTGGTTGAGCTGATCGACCTTTGGTGCCAAGAGAATTTTTGGATAAAACAATTAATGAAATCACCATCATCAGGCTCGACATAGGTGAGTTCTTCCTCCCCAAGGGACTCAATCTCAGCATCACCGGTATCAATGTCATCGACCAATGCCAGGGTTCGTCGTTGCGGACACTCGTCGGACAAGTGACCCACTTGTCTGCAGCGATAACATTTTCCCATTGTCGGACGGACATACTGATTCATCCCTTTCTTGGATACCAAATCAGTGTTCTTGACTGGAGGAAAAGTTTTAGGTTGTTCCTCTGTTACTTTGGAGCTGGAGGCAGAGGAAGAGCTGCCGACAGTGATTGGTTTGCCAGTGTTCGAGGGAGAAAATTTAGAACTAACCGTCTTATCCCAAGCTGTTCGACGAACCGGTTGCCTGCCCCATCTTCGTTCTATCTTTTCTTCAATCTTTGTAGCCATAGTGATAGCATCTGTCAAGAGACCAATGGGTTGGATGTCCAACTGATCTTGAATGTCTTCTCTGAGGCCATCAACAAAGCAGGCAATCTTGTAATCTTCACTTTCGGTTAAGTTTGTTTGGGTGCCTAGACGATGGAATTCTTCGATGTAATCGGCAATGGTCTTAGAACCTTGGTGACATTTCTGATATTGCTGGTACAATAATTGTTCAAAGTTGGACAGTAAAAATCGTTGACGCATGAGGCGCAACATCCGTGGCCAACTACGAATGGGACGCTTACCTAGGCGCCGTAGATTTATTTCCAGCTGATCCCACCAGGCTGAGGCACCAGACTGAAGTTTAAATGCCACAAGCCGTACCTTCTTATCATCCGGTGTATTGGTATAGTCGAAGAAGTTCTCAACGTTCTTTACCCAGTCCAAGAAAGCTTCAACGTCCATCTTACCGTGTGAAAGGAGGTAAGTCAATCTTCATTCGAAAGTCTGTACGCATGCCTCCTGTTTTGATGTTCGTCCCCCTGAACGAGGATTGTGTCGAAAAAAATCCTCCTCCTTGCCAGAAGAGTCTGATTCTTGAAGTCTCAGCTGCCAATCTTGATGTCGTCTTCCACGGCCTTCCATGTTTCTTGGTGGAACCAGAGTTTGGGATCGGTTTCTTGGACGTTCTTGAAGTCCAAATCTTTGTTGGCCCTCACGATTACCCAAATCCTCACGTAACCGTTCTTGTTCCAAAGCAATGTTTTCCAGGTGCTTTGACAAATTTTCCATCAACCAGTGGATAGTCTGCACACTGGAACGAACCTCCCCCAAGGAATCTTCTACCAACAATAAACGATCAGTAGCTGTTCTTGGAGAGAGCGGTTGAGTTGTTGAGAGATCTGCCGCAGGTCCCTTGCCGGAAGGTGTTGTGGACTTTCCTGCCATCAGATCCCAAGGAGTTTTTCGGGGCTCTCATACCAATTTGGTGTAAACCAATTCTCGAAGAAAACTCTATTCTGATTCTGCCTTGTACAAAGGAGTGGGTTGGCTATTTATAAGAGACCAACCAAGGACTAAAGCAGACTTGACTAAAACTAACTAAAACAGAAAGTACTAAGACTAACTCTTATATAACATAAGGTAACTTAACGGATTACATCACTCTCCTGGCCACAAAAACCTGCATTGTCACCAAACATAGCCACCTCTAATATATCTACCCTACAACCATTGACTGCAGAACCTATCAGCATCGAATACGAGGACAAGGCTTTGGAAAAAGGCTTGTTTTCACCTAATGGTTTTCGGGTAGTATTTAGAAAATTATCTAAAGGAGCCAGGCTTCTGCATTATGGCGGTTCCACAAACAAAACCAAAGACAAAAAAGCCTAATAAGATGGGTAAAACAAAGGTGGGAACCCGTGAGCTCAAAAGCCTCACTTCATCTATCAATTATGAGAAACAGAAGCTTCTTCAGGGGGGCTTCCATTGCTAAATGAAGCTCCCGTCATGGAATGTTAGAAGGTTGGGCTCGTGGAAGAAGAGAACCTAATAAAGCAATCCATCTCCCGCCTTAATCCAAACGTGGTGATTCTTCAAGAAACAAAGCTCTCCACTATAGACACCAAAGTATTTCCCTCTTTCTTTTCACTCTTTCGAGAGTGTGTTTTTTGAACATTTTCATTCCTTTCATTAATTCAATGAGAAACTTGTTTCTTGTTCAAAAAAAAAAAAGAGACTATAGACACCATCGTTGTTGTAAGTCCCTGTGGAACGCTCATGGATTTAATTGGACTGCCTTAGATGCAAATGGAACAGCTGGTGGAATTCTCATCCTCTGGAATGATTCAGACTTCACTGCCAATGAGATTATAGAAGATCCCACTCCTCCATCTTCACGTGAAATCCATCTAACTTGCACCATTTACCATTGAGCCAATCAAAGTTCAAGGGTCTTCCACTTTCGAATCTAAATAAAGCCTTATCTGCTAAGAAAGGGTTAACTTAGCAATTCTTCGAGAAGAAACTTTTTGAGGGAGGCATCGATTGCCTTTTAGCTATCCTGAGTGCAAAATCTTGAGATAACCATGACATTATCCAAATATGTTTCCACAACTTCATGTTCCTTTTGAACACAATAATAGTTGCTCCCTTTTCTTCGAAAACCTCATCCTCTACGGTAGGGGATGCCATCATACTATCTCTGATCTTAGCCCACTCTGCAAAAGAAAAGTTAGAGGGCACCCTACAATACCTTCCCTTTGAAATTCACCAATGATTCTTTTATCATGTCCCAATAGGTTATCCAATCGATCTTTCTAATCCCTGCAGGTACAATTATGAATTTTCTTCCACCCGAAGGGGGCCAAACAACCCATTTCAAAAACCAACCTTTCAAGAGTCTTTTTTCGGAGTCGACAAGTTCTGTTCCCATCCCTTACTTGCATGGAAAATCTTGAATACAAAGGACAATGCAGAAGTTCCACCAAAACATTTTCTAACCACTGAAGTTGGGAAAGTTGAAGAGAAATATGAATATTCTTCCTAGAGTCTTGAGAAAACGGTCACTATCGCACCCAACCCAATAGTAATTGTATTGAATGCTGGAATTTCTCCAATCCATTTGAAAGCAGCCAAAAAGGACGGTGAGCTGGTTAGGAAGACATTGGCAGCGGCTTAGGATAGGAGGACGTCGGCAGCGGAGTAAGGTTAGGAGGGAGTTGGCAGCGGAGGAGGACGTCGGCGACAGATTAGGGTTAGGGGAACGACGGTGTTGGGTTGGCCGACAACACCGAAGGGTTAGAGCGGCGGCTAGGGTTAGGGATGGCGAGCAGCGGCGATGGCGAAAAGAGGAGACCGAACGAGGAACCCTAGCGGCACAGATGAGAGCAGAGGTGAGGGTGGGGGTAGTGGCGATGGCGGATGGAGGAGAGGCCGGTGGCTAAGATTAGGGTTAGGGTTAGAGCGCGGCGGCTAGGGTTAGGGTTAGGATTAGAGAGTCGACGACGAATGGAAGAAGACGATAAGGGCTAGGGTTAGGGATAGATGGCAGCTAGGGTTAGGGTTTGCAAGATGCGGTGACGGTGAACGGCGCGGCGGCTAGGGTTAGGGTTGGGAGGGAGAGAGTCGGGGTGAAGCTTCAAAATATCCACTGCTGATTTTTTTAAAGTCAAGGGAACATTGACAAGGCTGATTCATTGACTATGTTCCAAGATTTTTTCAAAAAATGGAGTTATCAATGCTGTCCAAAATGAGACTTACATTTGTCTCATACCCAAAAAGAAAGAGGCTAAAAAGAAAGAGGCTAAAACAGTGTACGACTATCGACCGATCAGCCTCATCCCATGTGCCTACAAAATACTTGAAAGGGTTCTCCCCGAACGCCTCAAAAAGGTATTGCCTCTCACTATCACTAACCATCAATCTAGAAGGAATAGATATTGGATTCCGCCCTTATCGCAAATGAAATCATTGATGAATGGAAAACTTGAAAGTTAGAAGGGGTGGTGATCCAACTGGATCTTGAAAAGGCTTTCGACATGGGTAGATTGGGACTTTCTTGATATAATCCTATTTCACAAAGGATTTGGGGAGAAATGGAGGAGGAAATGGATTACGGCCTGTATCTCTACTACAAGCTTCTCCATCATCATAAACGGGAAACCGAGGAGCAAATTCACTGCTACAAGAGGCTTGAGCAAGGGGACCGCCTTTCCCCTTTTCTCTTCATTCTCATCACTGATGTCTTCAGTCGGCTGCTTCATCATGGAGAAGAACAAGGCCATATCTCAGGTTATGTCTCAAATTGTGGCTTGATTAGAATTGATCATCACCTTTTTGCAGATGACACCCTCCTCTTCTCCAAAAAGGATCCCTTCTACATCAAAAACCTACACAAGATTGTTAAGTTTTTTGAGATTGCTTCGGGTCTCAACATCAACTACAACAAATCCAGTGTATTTGGCATCTCTATCTGCACACGGACCATTAACAAAATCACCAAAGCATGGGGCTGTTCATCGGGAAGTTGGCCATGCACTTATTTGGGATTACCACTCAACGGTAACCCAAAAAAGGAAGCTTTCTGGTTGCCAATCATTGAGAAGCTTCATGTTCGGCTTAGTAGATGGAACAACTACTTCATTTCTAATTCATTTCTAAGGGGGGAGGCATACCATTCTTCAATCCATCCTCACGAACCTTCCCACATACTTCTTGTCTCTTTTCAAAATATCTGGCAAACGGTAGAGAAGATGGTAGAGAAGATGGATAAGATTTTAGAGACTTCTTATGGGAAGGACCAAGAAACAACGGCAAGCCCCATCTCATCAATTGGAATCGCACACAGCTCCCTATCAATGAAGGAGGTCTCGACATTGGGAACATTAAACAGAGGAACCATGCTCTCCTCTCAAAATGGGTGTGTGGCGCTACATAACCGAACCTAAACAACTATGGAGAAGACTTATCTCAGCAAAGTACTATGGAACCCTCTCAACTCTTTTGCCTATAGCTGCCATCCAATTCTAAAAGGACCTTGGCCTGCGATCACTCTACAAACCAACCTCGTAAAGGCAATAGCCATTTGTTGGCGGAGGGAGAGAGAGTAGCCAAATCAGCTTTTGGAATGATAGATGGTTTGCATAGGGCACCATTGCCTCTCTCTTTCCAAATATATACACTCTAGCAATGAATGTGGGAGCTACAATTGGAGACCAATGGTCTAGAACTACTTCCTCATGGAACTATAATTTCTGCAGACCCCTTAAAGAGGAGGAGATTGAAGAACGGATGCAATTATCTGTCTTGCTCAGCCCGATCTGCCCCCCCTTCTTGAGGATCATTTGGAGTTGGCCCCTAGAGCCATCGGGAGAGTTCACCACTAAATATGCCTTCAATCTTCTCAACACTCACCCTGCCCAATCAGCTCCCACCCTTTACCCTTGTATATGCCAAAGAAAATGTCCCAAGAAAATCAAATTCTTTTGTTGGGAACCAGCCATGGGGCTTTAAATACGCATGACAGAATACAGAGGAAGCACCCTTACATATCACTCTCCCCCACTGCTATCACCTCTGTTTTGGAAATTAAGAGACACAAAGTCACCTCTTTATTCTCTGTCCTTTTGCCACACGTTTTTGGAGCAGTGTTCTCTCGGCTTTTGGATGGTCTACAGTCCGTCACTCGCATCCAACCATTATTCTTGATTGTTTTTTGGTGGACCATCCTTTCAAACATGGCAAAGCTATTCTATGAGTTCAAATTGTTCGGGCTTTCTTATGGTCTATATGGTTAGAAAGGAATCGTCGGGTTTTCAAATGAAAAACCCTCTCTTTTGGAAACTTTTTGATGATAGAGTTCTTGTTTTAGCCTTGGGTTGGTGTGTAATTGTTTCTACCCCTTTCAACAATTACTCTCTTCATGATCTTATTACAAGTTGGAGAGCTTTCTTGTAATTGCCTTTGAGGCCTTTTGTATATTTCATACCATCAATGAAATATTTGTTTCATATAAAAAAAAAGGAAGAGAGAAAACCATCTTGGGTAGTCATTGGTTCAAAGGGGCTAGTGTAAAGTGAGAGGGAATGAGTTCAAACCCCATAATGGCCACCTATCTTAGAAATTAATGTGTTTCCAATACCAAATGTTGTATGGTCAAGCGGTTGCCTTGTGAGATTAGTCGAGGTGTGTGTAAGCTGGTTTGGACACTCACGAATATCAAAAATAGAGAGAGAGAGAGGAGAGCATCTAGATGGCTCTTACAAGAAAACCACATTTTTCTCTATCTTCTTTAGTTGCATCGTAGGAACCTGCAGAAGTCAAACTTATGTTGCATTGGCAACAACCTTTGCTTTGCCCCCTCTTTTGTGAGGATTCTAAAGGAGTCAAATTTAACCTGCAGAAAGGAACTCTTGTGTCTAAGTTATGCTGCAGTTTTGTTATTCGTGTAGAAAGGATGTGGAAACCAACCTCTCTTTGTTCATTGTGATTTTGGGGTCAAAGGTTGGCTCTCTATCTTTGGTTTATTTGACCTCAACTTTGCCCCGAAAAAAAAACAGAAAAGATTGACTTCTGGAAGTGCTTTCAGGATGGTGGCTAAAAAACAACTAGAATATTATGGAGAAGTGATATTAGGGATTTTATTTGGTCTTTTTGGTTAGAGAAAGACAATAGGATCTTCAACGATGGTTAAGTCCTCAAATGTTATTTGGCAAAATGTATCAGCTTATGGCCTCAAATTGCCGTGCCATTCATATAGATTTTTGTAATTATAGCAGCTTTTTAATCAATTTATACCTCCTTGGCTGAGGGATCTCTCTTCCCTCTACCTTTTGGCTGTATTTCCGTTTTTCATTAATGGAAGTCTGTCTCTTTTGAAAAAAAACTTGAAATTACTGTCATCGGTTTTTTTAATTTCATGGTTGATGCTGGGGCCGTGATTGCAAATTTTACGACTTTATTTATTACATATTTTCATTCTCTCTCTCTATCTATTATTTGTTCAGAAAAATATTGTTCTAAATGATTGCTTTTCCTCTTGGGATTGTGTGTCAGGGTCCTGCAAATAAGGGATGTAAATGTTCTACATGCCATGCCAATTTTGGTGACTGCCCAGGACATTATGGATACTTGAGTCTTGCTCTCCCTGTTTTTAATGTTGGTTATTTTACTACGATATTGGAAATTCTAAAGTGCATTTGCAAGGTATTGAACAGATAAGTGAAATGCTTTCCCTGGATTAGTGCAAACTTTCTTGGAATTTATTTCTCATGTCTAAAGTTTCTCTACAGTCAGTTCTTCTCGTATACTTTTGGAAGAGAAGCTTTACAAAGACTTCTTGAGGAAGATGAGAAATCCTAA

mRNA sequence

ATGAATAGAGCGCAAGTGGAAGGTCTGGTGTTCACTAAAGAACCATACATTGAGGATGTTGGACCTCGTAAAATCAAGAGTATGCAGTTTACTACGTTCTCCGGATCTGAAATTAGCAAAATGGCTGAAGTTCAGGTGTACAAAGGCTTATATTATGATACCACTCGGAAACCCATTGAGGGCGGCTTGTTGGATCCTCGAATGGGTCCTGCAAATAAGGGATGTAAATGTTCTACATGCCATGCCAATTTTGGTGACTGCCCAGGACATTATGGATACTTGAGTCTTGCTCTCCCTGTTTTTAATGTTGGTTATTTTACTACGATATTGGAAATTCTAAAGTGCATTTGCAAGTTCTTCTCGTATACTTTTGGAAGAGAAGCTTTACAAAGACTTCTTGAGGAAGATGAGAAATCCTAA

Coding sequence (CDS)

ATGAATAGAGCGCAAGTGGAAGGTCTGGTGTTCACTAAAGAACCATACATTGAGGATGTTGGACCTCGTAAAATCAAGAGTATGCAGTTTACTACGTTCTCCGGATCTGAAATTAGCAAAATGGCTGAAGTTCAGGTGTACAAAGGCTTATATTATGATACCACTCGGAAACCCATTGAGGGCGGCTTGTTGGATCCTCGAATGGGTCCTGCAAATAAGGGATGTAAATGTTCTACATGCCATGCCAATTTTGGTGACTGCCCAGGACATTATGGATACTTGAGTCTTGCTCTCCCTGTTTTTAATGTTGGTTATTTTACTACGATATTGGAAATTCTAAAGTGCATTTGCAAGTTCTTCTCGTATACTTTTGGAAGAGAAGCTTTACAAAGACTTCTTGAGGAAGATGAGAAATCCTAA

Protein sequence

MNRAQVEGLVFTKEPYIEDVGPRKIKSMQFTTFSGSEISKMAEVQVYKGLYYDTTRKPIEGGLLDPRMGPANKGCKCSTCHANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCICKFFSYTFGREALQRLLEEDEKS

Homology

[Close]

BLAST of Moc03g19220 vs. NCBI nr
Match: XP_038894318.1 (DNA-directed RNA polymerase III subunit 1 isoform X1 [Benincasa hispida])

HSP 1 Score: 248.8 bits (634), Expect = 2.7e-62
Identity = 117/131 (89.31%), Postives = 121/131 (92.37%), Query Frame = 0


Query: 1   MNRAQVEGLVFTKEPYIEDVGPRKIKSMQFTTFSGSEISKMAEVQVYKGLYYDTTRKPIE 60
           MNRAQ EGLVFTK+PYIEDVGPRKIKSMQFTTFSGSEISKMAEVQVYKGLYYDTTRKPI+
Sbjct: 1   MNRAQAEGLVFTKQPYIEDVGPRKIKSMQFTTFSGSEISKMAEVQVYKGLYYDTTRKPID 60

Query: 61  GGLLDPRMGPANKGCKCSTCHANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCICKFF 120
           GGLLDPRMGPANKGCKC+TCHANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCICK  
Sbjct: 61  GGLLDPRMGPANKGCKCTTCHANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCICKSC 120

Query: 121 SYTFGREALQR 132
           S     E L +
Sbjct: 121 SRILLEEKLYK 131

[Close]

BLAST of Moc03g19220 vs. NCBI nr
Match: XP_038894319.1 (DNA-directed RNA polymerase III subunit 1 isoform X2 [Benincasa hispida])

HSP 1 Score: 248.8 bits (634), Expect = 2.7e-62
Identity = 117/131 (89.31%), Postives = 121/131 (92.37%), Query Frame = 0


Query: 1   MNRAQVEGLVFTKEPYIEDVGPRKIKSMQFTTFSGSEISKMAEVQVYKGLYYDTTRKPIE 60
           MNRAQ EGLVFTK+PYIEDVGPRKIKSMQFTTFSGSEISKMAEVQVYKGLYYDTTRKPI+
Sbjct: 1   MNRAQAEGLVFTKQPYIEDVGPRKIKSMQFTTFSGSEISKMAEVQVYKGLYYDTTRKPID 60

Query: 61  GGLLDPRMGPANKGCKCSTCHANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCICKFF 120
           GGLLDPRMGPANKGCKC+TCHANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCICK  
Sbjct: 61  GGLLDPRMGPANKGCKCTTCHANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCICKSC 120

Query: 121 SYTFGREALQR 132
           S     E L +
Sbjct: 121 SRILLEEKLYK 131

[Close]

BLAST of Moc03g19220 vs. NCBI nr
Match: KAG6583479.1 (DNA-directed RNA polymerase III subunit 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 248.4 bits (633), Expect = 3.5e-62
Identity = 117/129 (90.70%), Postives = 121/129 (93.80%), Query Frame = 0


Query: 1   MNRAQVEGLVFTKEPYIEDVGPRKIKSMQFTTFSGSEISKMAEVQVYKGLYYDTTRKPIE 60
           MNRAQVEGLVFTK+PYIEDVGPRKIKSMQF+TFSGSEISKMAEVQVYKGLYYDTTRKPI+
Sbjct: 1   MNRAQVEGLVFTKQPYIEDVGPRKIKSMQFSTFSGSEISKMAEVQVYKGLYYDTTRKPID 60

Query: 61  GGLLDPRMGPANKGCKCSTCHANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCICKFF 120
           GGLLDPRMGPANKGCKC+TCHANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCICK  
Sbjct: 61  GGLLDPRMGPANKGCKCATCHANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCICKSC 120

Query: 121 SYTFGREAL 130
           S     E L
Sbjct: 121 SRILLEEKL 129

[Close]

BLAST of Moc03g19220 vs. NCBI nr
Match: XP_023519826.1 (DNA-directed RNA polymerase III subunit 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 247.3 bits (630), Expect = 7.8e-62
Identity = 116/129 (89.92%), Postives = 121/129 (93.80%), Query Frame = 0


Query: 1   MNRAQVEGLVFTKEPYIEDVGPRKIKSMQFTTFSGSEISKMAEVQVYKGLYYDTTRKPIE 60
           MN+AQVEGLVFTK+PYIEDVGPRKIKSMQF+TFSGSEISKMAEVQVYKGLYYDTTRKPI+
Sbjct: 1   MNKAQVEGLVFTKQPYIEDVGPRKIKSMQFSTFSGSEISKMAEVQVYKGLYYDTTRKPID 60

Query: 61  GGLLDPRMGPANKGCKCSTCHANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCICKFF 120
           GGLLDPRMGPANKGCKC+TCHANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCICK  
Sbjct: 61  GGLLDPRMGPANKGCKCATCHANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCICKSC 120

Query: 121 SYTFGREAL 130
           S     E L
Sbjct: 121 SRILLEEKL 129

[Close]

BLAST of Moc03g19220 vs. NCBI nr
Match: XP_022964790.1 (DNA-directed RNA polymerase III subunit 1 [Cucurbita moschata])

HSP 1 Score: 247.3 bits (630), Expect = 7.8e-62
Identity = 116/129 (89.92%), Postives = 121/129 (93.80%), Query Frame = 0


Query: 1   MNRAQVEGLVFTKEPYIEDVGPRKIKSMQFTTFSGSEISKMAEVQVYKGLYYDTTRKPIE 60
           MN+AQVEGLVFTK+PYIEDVGPRKIKSMQF+TFSGSEISKMAEVQVYKGLYYDTTRKPI+
Sbjct: 1   MNKAQVEGLVFTKQPYIEDVGPRKIKSMQFSTFSGSEISKMAEVQVYKGLYYDTTRKPID 60

Query: 61  GGLLDPRMGPANKGCKCSTCHANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCICKFF 120
           GGLLDPRMGPANKGCKC+TCHANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCICK  
Sbjct: 61  GGLLDPRMGPANKGCKCATCHANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCICKSC 120

Query: 121 SYTFGREAL 130
           S     E L
Sbjct: 121 SRILLEEKL 129

[Close]

BLAST of Moc03g19220 vs. ExPASy Swiss-Prot
Match: F4JXF9 (DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPC1 PE=2 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 5.9e-36
Identity = 71/108 (65.74%), Postives = 81/108 (75.00%), Query Frame = 0


Query: 11  FTKEPYIEDVGPRKIKSMQFTTFSGSEISKMAEVQVYKGLYYDTTRKPIEGGLLDPRMGP 70
           FTK+PYIEDVGP KIKS+ F+  S  E+ K AEVQV+    YD + KP E GLLDPRMGP
Sbjct: 9   FTKKPYIEDVGPLKIKSINFSVLSDLEVMKAAEVQVWNIGLYDHSFKPYENGLLDPRMGP 68

Query: 71  ANKGCKCSTCHANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCICK 119
            NK   C+TC  NF +CPGHYGYL L LPV+NVGYF  IL+ILKCICK
Sbjct: 69  PNKKSICTTCEGNFQNCPGHYGYLKLDLPVYNVGYFNFILDILKCICK 116

[Close]

BLAST of Moc03g19220 vs. ExPASy Swiss-Prot
Match: Q6BI69 (DNA-directed RNA polymerase III subunit RPC1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=RPC1 PE=3 SV=2)

HSP 1 Score: 101.7 bits (252), Expect = 7.0e-21
Identity = 49/122 (40.16%), Postives = 72/122 (59.02%), Query Frame = 0


Query: 17  IEDVGPRKIKSMQFTTFSGSEISKMAEVQVYKGLYYDTT--RKPIEGGLLDPRMGPANKG 76
           + DV P+ IK ++F   S  +I   +EV+V+    YD    R P +GG LD +MG ++  
Sbjct: 5   VVDVAPKCIKGIEFGALSAKDIIAQSEVEVHTRDLYDLEKGRIPKDGGALDTKMGISSNA 64

Query: 77  CKCSTCHANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCICKFFSYTFGREALQRLLE 136
            +C+TCH N   C GH+G++ LALPVF+VGYF   +++L+CICK  S     E  +R   
Sbjct: 65  NECATCHGNLASCHGHFGHIKLALPVFHVGYFKATIQVLQCICKNCSAVLLDEQTKRSFL 124

[Close]

BLAST of Moc03g19220 vs. ExPASy Swiss-Prot
Match: P04051 (DNA-directed RNA polymerase III subunit RPC1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPO31 PE=1 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 6.5e-19
Identity = 42/99 (42.42%), Postives = 64/99 (64.65%), Query Frame = 0


Query: 22  PRKIKSMQFTTFSGSEISKMAEVQVYKGLYYD--TTRKPIEGGLLDPRMGPANKGCKCST 81
           P++IK ++F+  S ++I   +EV+V     +D    R P   G LDP+MG ++   +C+T
Sbjct: 10  PKRIKGLEFSALSAADIVAQSEVEVSTRDLFDLEKDRAPKANGALDPKMGVSSSSLECAT 69

Query: 82  CHANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCICK 119
           CH N   C GH+G+L LALPVF++GYF   ++IL+ ICK
Sbjct: 70  CHGNLASCHGHFGHLKLALPVFHIGYFKATIQILQGICK 108

[Close]

BLAST of Moc03g19220 vs. ExPASy Swiss-Prot
Match: O94666 (DNA-directed RNA polymerase III subunit rpc1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpc1 PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 8.5e-19
Identity = 50/107 (46.73%), Postives = 65/107 (60.75%), Query Frame = 0


Query: 13  KEPYIEDVGPRKIKSMQFTTFSGSEISKMAEVQV-YKGLYYDTTRKPIEGGLLDPRMGPA 72
           K+P I+D  P++IK +QF      E  K   V+V  + LY  T R P E G LD  MG +
Sbjct: 2   KDP-IDDQIPKRIKHLQFGINGPEEFVKDGTVEVSRRDLYTMTDRSPAEHGALDLHMGTS 61

Query: 73  NKGCKCSTCHANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCICK 119
           NK   C+TC  +  DC GH+GY+ LALPVF++GYF   L IL+ ICK
Sbjct: 62  NKQINCATCGESMADCMGHFGYVKLALPVFHIGYFKATLTILQNICK 107

[Close]

BLAST of Moc03g19220 vs. ExPASy Swiss-Prot
Match: P35084 (DNA-directed RNA polymerase II subunit rpb1 OS=Dictyostelium discoideum OX=44689 GN=polr2a PE=2 SV=2)

HSP 1 Score: 93.2 bits (230), Expect = 2.5e-18
Identity = 42/95 (44.21%), Postives = 60/95 (63.16%), Query Frame = 0


Query: 23  RKIKSMQFTTFSGSEISKMAEVQVYKGLYYDTTRKPIEGGLLDPRMGPANKGCKCSTCHA 82
           RK+K +QF   S  EI  M+  +V     Y+   KP  GGLLDP MG  +K  +C TC  
Sbjct: 13  RKVKRVQFGILSPDEIRNMSVARVEHPETYE-NGKPKAGGLLDPAMGTIDKTQRCQTCSG 72

Query: 83  NFGDCPGHYGYLSLALPVFNVGYFTTILEILKCIC 118
              +CPGH+G++ LA PVF++G+  T+L+IL+C+C
Sbjct: 73  TMAECPGHFGHIELAKPVFHIGFIDTVLKILRCVC 106

[Close]

BLAST of Moc03g19220 vs. ExPASy TrEMBL
Match: A0A6J1HLT9 (DNA-directed RNA polymerase subunit OS=Cucurbita moschata OX=3662 GN=LOC111464789 PE=3 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 3.8e-62
Identity = 116/129 (89.92%), Postives = 121/129 (93.80%), Query Frame = 0


Query: 1   MNRAQVEGLVFTKEPYIEDVGPRKIKSMQFTTFSGSEISKMAEVQVYKGLYYDTTRKPIE 60
           MN+AQVEGLVFTK+PYIEDVGPRKIKSMQF+TFSGSEISKMAEVQVYKGLYYDTTRKPI+
Sbjct: 1   MNKAQVEGLVFTKQPYIEDVGPRKIKSMQFSTFSGSEISKMAEVQVYKGLYYDTTRKPID 60

Query: 61  GGLLDPRMGPANKGCKCSTCHANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCICKFF 120
           GGLLDPRMGPANKGCKC+TCHANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCICK  
Sbjct: 61  GGLLDPRMGPANKGCKCATCHANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCICKSC 120

Query: 121 SYTFGREAL 130
           S     E L
Sbjct: 121 SRILLEEKL 129

[Close]

BLAST of Moc03g19220 vs. ExPASy TrEMBL
Match: A0A6J1I0L0 (DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111469417 PE=3 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 1.1e-61
Identity = 115/129 (89.15%), Postives = 120/129 (93.02%), Query Frame = 0


Query: 1   MNRAQVEGLVFTKEPYIEDVGPRKIKSMQFTTFSGSEISKMAEVQVYKGLYYDTTRKPIE 60
           MN+ QVEGLVFTK+PYIEDVGPRKIKSMQF+TFSGSEISKMAEVQVYKGLYYDTTRKPI+
Sbjct: 1   MNKTQVEGLVFTKQPYIEDVGPRKIKSMQFSTFSGSEISKMAEVQVYKGLYYDTTRKPID 60

Query: 61  GGLLDPRMGPANKGCKCSTCHANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCICKFF 120
           GGLLDPRMGPANKGCKC+TCHANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCICK  
Sbjct: 61  GGLLDPRMGPANKGCKCATCHANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCICKSC 120

Query: 121 SYTFGREAL 130
           S     E L
Sbjct: 121 SRILLEEKL 129

[Close]

BLAST of Moc03g19220 vs. ExPASy TrEMBL
Match: A0A1S3CNX9 (DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103502942 PE=3 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 1.1e-61
Identity = 114/131 (87.02%), Postives = 122/131 (93.13%), Query Frame = 0


Query: 1   MNRAQVEGLVFTKEPYIEDVGPRKIKSMQFTTFSGSEISKMAEVQVYKGLYYDTTRKPIE 60
           MNRAQVEGLVFTK+PYIEDVGPRKIKSMQFTTFSG+EISK+AEVQVYKGLYYDTTRKPI+
Sbjct: 1   MNRAQVEGLVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPID 60

Query: 61  GGLLDPRMGPANKGCKCSTCHANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCICKFF 120
           GGLLDPRMGPANKGCKCSTCHANFGDCPGHYGY++L+LPVFNVGYFTTILEILKCICK  
Sbjct: 61  GGLLDPRMGPANKGCKCSTCHANFGDCPGHYGYVNLSLPVFNVGYFTTILEILKCICKSC 120

Query: 121 SYTFGREALQR 132
           S     E L +
Sbjct: 121 SRILLEEKLYK 131

[Close]

BLAST of Moc03g19220 vs. ExPASy TrEMBL
Match: A0A0A0LSG9 (DNA-directed RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_1G084270 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.4e-61
Identity = 114/129 (88.37%), Postives = 121/129 (93.80%), Query Frame = 0


Query: 1   MNRAQVEGLVFTKEPYIEDVGPRKIKSMQFTTFSGSEISKMAEVQVYKGLYYDTTRKPIE 60
           MNRAQVEGLVFTK+PYIEDVGPRKIKSMQFTTFSG+EISK+AEVQVYKGLYYDTTRKPI+
Sbjct: 1   MNRAQVEGLVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPID 60

Query: 61  GGLLDPRMGPANKGCKCSTCHANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCICKFF 120
           GGLLDPRMGPANKGCKC+TCHANFGDCPGHYGY++LALPVFNVGYFTTILEILKCICK  
Sbjct: 61  GGLLDPRMGPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSC 120

Query: 121 SYTFGREAL 130
           S     E L
Sbjct: 121 SRILLEEKL 129

[Close]

BLAST of Moc03g19220 vs. ExPASy TrEMBL
Match: A0A2I4DDG5 (DNA-directed RNA polymerase subunit OS=Juglans regia OX=51240 GN=LOC108979063 PE=3 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.4e-48
Identity = 92/131 (70.23%), Postives = 108/131 (82.44%), Query Frame = 0


Query: 1   MNRAQVEGLVFTKEPYIEDVGPRKIKSMQFTTFSGSEISKMAEVQVYKGLYYDTTRKPIE 60
           M  AQ E + FTK PYIEDVGPRKIKSM+F+TFS SEISK+AEVQVYKG YYD  R PIE
Sbjct: 1   MAGAQAEDIAFTKHPYIEDVGPRKIKSMKFSTFSESEISKLAEVQVYKGQYYDAKRNPIE 60

Query: 61  GGLLDPRMGPANKGCKCSTCHANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCICKFF 120
           GGLLDPRMGPANK C C+TCH +FG+CPGH+GYL LA+PV+NVGY +TIL+ILKCICK  
Sbjct: 61  GGLLDPRMGPANKNCICATCHGSFGNCPGHFGYLKLAVPVYNVGYMSTILDILKCICKSC 120

Query: 121 SYTFGREALQR 132
           ++    E L++
Sbjct: 121 AHILLEENLRK 131

[Close]

BLAST of Moc03g19220 vs. TAIR 10
Match: AT5G60040.1 (nuclear RNA polymerase C1 )

HSP 1 Score: 151.8 bits (382), Expect = 4.2e-37
Identity = 71/108 (65.74%), Postives = 81/108 (75.00%), Query Frame = 0


Query: 11  FTKEPYIEDVGPRKIKSMQFTTFSGSEISKMAEVQVYKGLYYDTTRKPIEGGLLDPRMGP 70
           FTK+PYIEDVGP KIKS+ F+  S  E+ K AEVQV+    YD + KP E GLLDPRMGP
Sbjct: 9   FTKKPYIEDVGPLKIKSINFSVLSDLEVMKAAEVQVWNIGLYDHSFKPYENGLLDPRMGP 68

Query: 71  ANKGCKCSTCHANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCICK 119
            NK   C+TC  NF +CPGHYGYL L LPV+NVGYF  IL+ILKCICK
Sbjct: 69  PNKKSICTTCEGNFQNCPGHYGYLKLDLPVYNVGYFNFILDILKCICK 116

[Close]

BLAST of Moc03g19220 vs. TAIR 10
Match: AT5G60040.2 (nuclear RNA polymerase C1 )

HSP 1 Score: 151.8 bits (382), Expect = 4.2e-37
Identity = 71/108 (65.74%), Postives = 81/108 (75.00%), Query Frame = 0


Query: 11  FTKEPYIEDVGPRKIKSMQFTTFSGSEISKMAEVQVYKGLYYDTTRKPIEGGLLDPRMGP 70
           FTK+PYIEDVGP KIKS+ F+  S  E+ K AEVQV+    YD + KP E GLLDPRMGP
Sbjct: 9   FTKKPYIEDVGPLKIKSINFSVLSDLEVMKAAEVQVWNIGLYDHSFKPYENGLLDPRMGP 68

Query: 71  ANKGCKCSTCHANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCICK 119
            NK   C+TC  NF +CPGHYGYL L LPV+NVGYF  IL+ILKCICK
Sbjct: 69  PNKKSICTTCEGNFQNCPGHYGYLKLDLPVYNVGYFNFILDILKCICK 116

[Close]

BLAST of Moc03g19220 vs. TAIR 10
Match: AT4G35800.1 (RNA polymerase II large subunit )

HSP 1 Score: 89.4 bits (220), Expect = 2.5e-18
Identity = 41/96 (42.71%), Postives = 62/96 (64.58%), Query Frame = 0


Query: 24  KIKSMQFTTFSGSEISKMAEVQVYKGLYYDTTR--KPIEGGLLDPRMGPANKGCKCSTCH 83
           K++ +QF   S  EI +M+ + V    + +TT   KP  GGL D R+G  ++  KC TC 
Sbjct: 14  KVRVVQFGILSPDEIRQMSVIHVE---HSETTEKGKPKVGGLSDTRLGTIDRKVKCETCM 73

Query: 84  ANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCIC 118
           AN  +CPGH+GYL LA P+++VG+  T+L I++C+C
Sbjct: 74  ANMAECPGHFGYLELAKPMYHVGFMKTVLSIMRCVC 106

The following BLAST results are available for this feature:

BLAST of Moc03g19220 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038894318.1	2.7e-62	89.31	DNA-directed RNA polymerase III subunit 1 isoform X1 [Benincasa hispida]	[more]
XP_038894319.1	2.7e-62	89.31	DNA-directed RNA polymerase III subunit 1 isoform X2 [Benincasa hispida]	[more]
KAG6583479.1	3.5e-62	90.70	DNA-directed RNA polymerase III subunit 1, partial [Cucurbita argyrosperma subsp...	[more]
XP_023519826.1	7.8e-62	89.92	DNA-directed RNA polymerase III subunit 1 [Cucurbita pepo subsp. pepo]	[more]
XP_022964790.1	7.8e-62	89.92	DNA-directed RNA polymerase III subunit 1 [Cucurbita moschata]	[more]

BLAST of Moc03g19220 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JXF9	5.9e-36	65.74	DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRP...	[more]
Q6BI69	7.0e-21	40.16	DNA-directed RNA polymerase III subunit RPC1 OS=Debaryomyces hansenii (strain AT...	[more]
P04051	6.5e-19	42.42	DNA-directed RNA polymerase III subunit RPC1 OS=Saccharomyces cerevisiae (strain...	[more]
O94666	8.5e-19	46.73	DNA-directed RNA polymerase III subunit rpc1 OS=Schizosaccharomyces pombe (strai...	[more]
P35084	2.5e-18	44.21	DNA-directed RNA polymerase II subunit rpb1 OS=Dictyostelium discoideum OX=44689...	[more]

BLAST of Moc03g19220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HLT9	3.8e-62	89.92	DNA-directed RNA polymerase subunit OS=Cucurbita moschata OX=3662 GN=LOC11146478...	[more]
A0A6J1I0L0	1.1e-61	89.15	DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111469417 ...	[more]
A0A1S3CNX9	1.1e-61	87.02	DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103502942 PE=3...	[more]
A0A0A0LSG9	1.4e-61	88.37	DNA-directed RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_1G084270 PE=4 SV=1	[more]
A0A2I4DDG5	1.4e-48	70.23	DNA-directed RNA polymerase subunit OS=Juglans regia OX=51240 GN=LOC108979063 PE...	[more]

BLAST of Moc03g19220 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G60040.1	4.2e-37	65.74	nuclear RNA polymerase C1	[more]
AT5G60040.2	4.2e-37	65.74	nuclear RNA polymerase C1	[more]
AT4G35800.1	2.5e-18	42.71	RNA polymerase II large subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044893	RNA polymerase Rpb1, clamp domain superfamily	GENE3D	4.10.860.120	RNA polymerase II, clamp domain	coord: 15..134 e-value: 5.3E-31 score: 109.0
IPR007080	RNA polymerase Rpb1, domain 1	PFAM	PF04997	RNA_pol_Rpb1_1	coord: 23..128 e-value: 6.6E-30 score: 104.5
None	No IPR available	PANTHER	PTHR19376	DNA-DIRECTED RNA POLYMERASE	coord: 9..121
None	No IPR available	PANTHER	PTHR19376:SF57	DNA-DIRECTED RNA POLYMERASE SUBUNIT	coord: 9..121
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 23..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc03g19220.1	Moc03g19220.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0046872	metal ion binding