Moc03g19140 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc03g19140
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	RNase H domain-containing protein
Location	chr3: 12790096 .. 12794445 (-)
RNA-Seq Expression	Moc03g19140
Synteny	Moc03g19140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTGTTTGGTCGGTCCCAAACTCGTGGAGTGTTTTCGACCTTGAGTATAGTGAGTATTCTGTCTGCTCAAGTAACGACTACAAAGGTAATCCCTCTAACCCTTGGCCTTTTGGGTTGAAACCATCTATACGTTTGAGTTCAAATGGTCAAATGGCTTGTGGCTCGAGTAGTCTAATACGCTTCCCAAGGGAGTTGGGATCGTCTGAGGTGAGGAGAAGATCTCTCGAGAGTGCTGCGCGGCCGCTTTGAAAAGATCAAACACATGTGCTACCATTCTAATTTTTAAATCACATTTTATAATTTAGATTAAATATGTTATTCACAATGATTCATAACTATTATAAGTGGTAAATTGAGAATATATTTTTTCAAATATCATAACTTTTTAATATGTTACATATAAACTAATGATTGAATTCAAATAAATCTTTTAATAATTAAAAAATTGTTATAAATTTAAACTCCATGTTAATTTTTATTGTTGTTTTTCATCATGCTATTGATAATTTATTTAAACATTTAGTTTAGGTCTTATTTTGTCCCAATATTTTTAATTACTATATATTTTTTTTATAATCCTTCGATTTTCAAATCTTCTATTAATCTTTCAACTTCACGTGTAAATTTCTTTTAGTTCTTACCATTAATTATTTAATATAAACTTGAATTTGTTGTTTTTTTCATGTGGAAGTGGAAATTTAAATTCACAGTCTTAAGTGTCTTAAGTAATTGAGCTATGCTCAAATTGATAATTTAAATTTGTTTTGAAATTATCCACCCAACATAAATTTGGGCATTGAACAGAGAAGGTTATGCTTTGCCTTAGCCATATTTGATCATATCACATTTGTTCTTACCGTAAAATTCCCGATAATGAACAATAGATCTTCAAGAACACTCAAAGATGAGAGCCTGCAAAAGGAGTTAACACTCCAAAGGTTTTGTCAGTAAAAGATAGAAATAAGTTGAATAGATGTGAATCTTCAAATTTGCGTACCTTGTCCTCATTTACTTTAGAATATTTATAATGCCCTTCTGATAATCGTTGGAGTAAGATTTTAAATTTGAAACCTACTGTTATCTCCTCATTTATTAGTAAACCACATGCATTAAAAGAGGTGTTATGGTTATGCGGTTAATAATTGGAATGTTGAGCACAAGTTCGGTCATTCGCCGAACTAGAAATAATCCGAATTAATGCTACGTGAAATAATTTAATCAGGTATCCATTCAAGTAGTAGATGACGTGTCCTTTAAAAAGTGTATTTTTTCCTCAATCAACATTCATTCAAATCTGAGCTCATCTACTCTATTTCTGATTATATGTTTTCTTCACATCCTCAAATACTTGTTAGAGGATGATCTTACTGGCCTTCTTGAGTTGGAGGAGATCTATTGGAAACAGCGTTCCCATCAAAATTGACTTAAATGGGGTGATCGCAACACTAAGTGATTCCATTTATATCATACTTTCAGTCCATTTTCACAACTTCTAGTCCTTCCTCTACAGACATTGAAGTTGTTACTCATCTCATCCCTCACAAAGTCTCACTGGAAATGAACTCCCGTCTTTTCGCTCCTTATAGCCGAGAAGAGATAGTGATTGCAGTAAAACAGATGTTCCCGACGAAATCTCCAAGTCTCGATGGTCTACCAGCTCTTTTTTATCAAAATTATTGGGCAATTGTGGGACCAAAATTAGTGGAGGCTTGTTGAATGTTTTAAATAACAATGTTGATATTCAAGCCTGGAACTCTACATACATCGCCCTTATTCCGAAAGTTAAACAGTCGAGGTTAGTGTCGAATTATATGCCTATTAGCCTTTGTAATGTTTCTTACAAGATTATAACAAAATCCATCACTAATCGGCTTAAAATTTTCATCGGGCTTGTTATCTCTGATTCTCAATCGACATTTATTCCAAATCAGACTATCACTGATAATGTCATTATTGGACATGAGTGCATTCATTATATTAAAAACAACAAGTATGGAGTAAATGGTTTGGCTGCCTTTAAACTGGATCTAAGCAAAACTTTCGATCGGGTTGAATGGTATTATCTAGAATGTTTCATGAGAAAATTGGGTTTTGCTGACAGATGGATCTTCCAAATTATGAGATGCCTTTCCACGGTGATTTTCTATTCTCATTAATGGCTTTACAAGCTTCTTGAGGAATTAGACATGGCGACCCATTATCCCCTATCTTTTCCTTCTCTGTGCAGAAGGTCTCTCTGCGATTATCAACAATGCCAACCGTTCGGGTCGCCTTTCAGGTATCCAATTTGATCATATTAACCAGACTATCTCTCACCTTCTTTTTGCAGATAGCAGCCTCATCTTTCTCAAGTCATCTAAATCTGAATGCCTCACCATTAAGCGGCTTCTAGAAACATACGGGCGCGCTTTGGGCCAAAGCATAAACTACATAAAATCAGCCCTTCTCTTCTCCCCGAATGTTCACCCTGAGAGGAAAAAATATCTTTAGACTATTCTACATGTTAACTTGGTGAAGACTTTGGCTTCTATCTTGGGTTGCCTTCGTCTTTCACCGAAGAAAATTCTTGGATTGGAATTTTCTCAAAGACAGAATTTGGAAAGCCATGCAAGGTTGGAAGCGTTCTTTCTTTTCTACAGAGGAAAAGAAGTCCTAATCAAAAGTATTGGTCAAGCTATCTCATCTTATGCTATGAGTGTATTTCAACTCCCAAAAGGTTTCTGCAATGAAATCACTCGTATGTTTGCCCACTTTTGGTGGGGGTCTACGTTGGATTCTTGGAAGATTAATTGGATGAAATGAGACAACTTGTGTTATCCTAATGAATTGGGGGGTTTAAACTGTAGAGACCTTGAAGGTTTTAACCAAGCTTTGGTGGCTAAACATGTTTGGAGATTTCTTCAAAATCCAATCCTCTTAGTCTCAAAGGTTCTGAAGGTCAAGTATTTCCAAAACTCGGGTGTGCTCGATGCTTTGGACTCTTGCAACTCTTCTTACTCCTGGAAAAACTTTATTTGAGGGAAAGAGCTTCTTATTAAAGGGCTTCGTTATCGCATTGGTAATGGATCCTCTGTACGGGTCTTTTCCAACCCCTGGATTCCTCAACCCCTTCATTTTCGTCCTATTACAGTGCACAATGGTAATTTTGATCTTCGGATTTCTACGTTTATTAACCAAAGAAGCAAATGAGATGAGAATTTAGTCTCTAATTATTTTTATGCTGAAGACAAAGACATCATTCTTGTGCTGCCTATAAGCCCGCATAATCTTCAAGACTCTTGGTTATGACACCATGATAAAAGGGGAACCTACAGTGTCAAGAGTAGTTACAAACTCTTTATGAACCTCAAATGTTTAGAGCCCTTTACCAGCAATTCTCATCATGGAGGCTAATCAAATTCTATTTGGGGCCTATCTATCCCTACCAAAGTTAAACTTTTCCTATGGAAAGCAGCTCATGAACATCTTCCTACAAATCACATTCTAAACAAGTAAGGAATTCAAAGTGTTACCTGTTTGCTCTTTTTGTCCTTTGAAGTTAGAGAGTTATATTCATGCTATCTTCCTCTACAAGCAAGCCCGTCTCATTTGGAATATGTTGTTTCCTTCTCTGTCTTTCTTTCCTGCATGTTCAGATATTAGTTTTCTTGATCTTTGGTGGCTATTCTTGCTAAAATAAAATCAGAAGAAAGGGAGTTAGCGGCAATAACCTGTTGAGCTATTTGGAGTGATAGGAATGCATCGCTCCATGGAATTCCTTTATCTGATATAGGCCAAAAATGTGATTGGATAAACTCGTATACGTGGAACTTTCTACTCGCTCAAGCAGGATGTTCTAATCGTTCCGCATCTGAGTCCCATTCTAATCGGCTTCAAACTCCATCCGGGATTCTTTCTTGATCCAATTCGGTATCCCGTGGAGGTCAGATTCATCAGGTTTGGGTTCCCCCTCCACAAAATTACCTTAAATTGAATGTGGATGATGCATGTCACATTTCCCCATCAGGCTTAGGTCTCCTTCTTCGCAAATAGAATGGGCGTTTTCATGCGGCAAAATTTGTGTTCATCCCTTATCCTCTTTCGCCTCTCTTTGCTTAATCAAACGGGATTTTGGAAGGCATGAAATTTGCCCAATCTCTTAATTGTCCCCTTCTACAGGTGGAATCTGACTCTCTTTCAACAATTCGTTTGATTCAAGGTGATATCTCAACTCTGGGAGATGAACTGAACTGGATAATTGAAATCAGACACCTTGCATCAACCTTCAGTTCCATCAATTTTGCTTATACTCCACGAGATTGCAACAAACCAGTGGATTATCTAGCACAATGGGGGTGTCTTCTTTAG

mRNA sequence

ATGCTTGTTTGGTCGGTCCCAAACTCGTGGAGTGTTTTCGACCTTGAGTATAGTGAGTATTCTGTCTGCTCAAGTAACGACTACAAAGGTAATCCCTCTAACCCTTGGCCTTTTGGGTTGAAACCATCTATACGTTTGAGTTCAAATGGTCAAATGGCTTGTGGCTCGAGTAGTCTAATACGCTTCCCAAGGGAGTTGGGATCGTCTGAGGATGTTCTAATCGTTCCGCATCTGAGTCCCATTCTAATCGGCTTCAAACTCCATCCGGGATTCTTTCTTGATCCAATTCGGTATCCCGTGGAGGTGGAATCTGACTCTCTTTCAACAATTCGTTTGATTCAAGGTGATATCTCAACTCTGGGAGATGAACTGAACTGGATAATTGAAATCAGACACCTTGCATCAACCTTCAGTTCCATCAATTTTGCTTATACTCCACGAGATTGCAACAAACCAGTGGATTATCTAGCACAATGGGGGTGTCTTCTTTAG

Coding sequence (CDS)

ATGCTTGTTTGGTCGGTCCCAAACTCGTGGAGTGTTTTCGACCTTGAGTATAGTGAGTATTCTGTCTGCTCAAGTAACGACTACAAAGGTAATCCCTCTAACCCTTGGCCTTTTGGGTTGAAACCATCTATACGTTTGAGTTCAAATGGTCAAATGGCTTGTGGCTCGAGTAGTCTAATACGCTTCCCAAGGGAGTTGGGATCGTCTGAGGATGTTCTAATCGTTCCGCATCTGAGTCCCATTCTAATCGGCTTCAAACTCCATCCGGGATTCTTTCTTGATCCAATTCGGTATCCCGTGGAGGTGGAATCTGACTCTCTTTCAACAATTCGTTTGATTCAAGGTGATATCTCAACTCTGGGAGATGAACTGAACTGGATAATTGAAATCAGACACCTTGCATCAACCTTCAGTTCCATCAATTTTGCTTATACTCCACGAGATTGCAACAAACCAGTGGATTATCTAGCACAATGGGGGTGTCTTCTTTAG

Protein sequence

MLVWSVPNSWSVFDLEYSEYSVCSSNDYKGNPSNPWPFGLKPSIRLSSNGQMACGSSSLIRFPRELGSSEDVLIVPHLSPILIGFKLHPGFFLDPIRYPVEVESDSLSTIRLIQGDISTLGDELNWIIEIRHLASTFSSINFAYTPRDCNKPVDYLAQWGCLL

Homology

[Close]

BLAST of Moc03g19140 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 69.3 bits (168), Expect = 3.4e-08
Identity = 30/61 (49.18%), Postives = 44/61 (72.13%), Query Frame = 0


Query: 100  VEVESDSLSTIRLIQGDISTLGDELNWIIEIRHLASTFSSINFAYTPRDCNKPVDYLAQW 159
            +EVESDSL  I+LI+ +I T GDE NW++EI+ L   F+ I+F+++ R CN+    LA+W
Sbjct: 1365 LEVESDSLLAIQLIRNEIHTRGDEQNWVMEIQALTCCFAFISFSHSSRQCNRAAHGLAKW 1424

Query: 160  G 161
            G
Sbjct: 1425 G 1425

[Close]

BLAST of Moc03g19140 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.7e-08
Identity = 30/61 (49.18%), Postives = 44/61 (72.13%), Query Frame = 0


Query: 100  VEVESDSLSTIRLIQGDISTLGDELNWIIEIRHLASTFSSINFAYTPRDCNKPVDYLAQW 159
            +EVESDSL  I+LI+ +I T GDE NW++EI+ L   F+ I+F+++ R CN+    LA+W
Sbjct: 1365 LEVESDSLLAIQLIRNEIHTRGDEQNWVMEIQALTCCFAFISFSHSSRQCNRAAHGLAKW 1424

Query: 160  G 161
            G
Sbjct: 1425 G 1425

[Close]

BLAST of Moc03g19140 vs. ExPASy TrEMBL
Match: A0A5C7IST2 (RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_000473 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 9.4e-04
Identity = 24/60 (40.00%), Postives = 36/60 (60.00%), Query Frame = 0


Query: 99  PVEVESDSLSTIRLIQGDISTLGDELNWIIEIRHLASTFSSINFAYTPRDCNKPVDYLAQ 158
           P+ +ESDSL+ +RL  G+IST  D  N I +I+ L S     + +Y PR CN+    +A+
Sbjct: 309 PLSIESDSLNVVRLCNGEISTRNDVFNVICDIQFLLSRERKTSISYIPRSCNRVAHEVAR 368

The following BLAST results are available for this feature:

BLAST of Moc03g19140 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158377.1	3.4e-08	49.18	uncharacterized protein LOC111024874 [Momordica charantia]	[more]

BLAST of Moc03g19140 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc03g19140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DX30	1.7e-08	49.18	uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A5C7IST2	9.4e-04	40.00	RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_000473 ...	[more]

BLAST of Moc03g19140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 99..159 e-value: 4.5E-10 score: 39.4
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 99..157 e-value: 2.87984E-10 score: 53.0868

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc03g19140.1	Moc03g19140.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity