Moc03g18950 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc03g18950
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Reverse transcriptase domain-containing protein
Location	chr3: 12564146 .. 12565241 (+)
RNA-Seq Expression	Moc03g18950
Synteny	Moc03g18950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGTGACTGAGATTGAGCCGATGCATCTAAACAGAAATTCTTTGTCGTCACCGGCTCCCCCTCCCAGTGCTGTTAGTGACCTGGGGCAGCAACCGATTGTTCTGGTGGAGGTTAAACTGTCTGGGCAAGCTGCATCTATTTCGGTGCCATGTTCACACGTGTAGGAGGAGCACATTTTTCTTGATACAGGTATTTCAGGTGGTTCTCTGTTCCCTAACATTCTGGGAGTGGATTCGTCTCTGTCTCCGAATTTGCACTGCAGGGAGTCCAGATCCAGTGTTCCAGTGCTAGCCCAAGACTCTGCCCCCTCAGCCTTTATGTTATTGGACCTCCTAGCACCTTTCGACCCATCACTGTCTATAGCCCCTGACCAAAAGAAAAAGAAGTGGAAAAGAGTGGCATGTGAGCAGTCCAAAAATACAGTGTAAAACGTGGTTATCCAAGACAAATTGGGCAAAAGGAGGATTCCAATCGACGATTTGCGTTCTGAGGTAAATTCACAGAAGAAGGCTCAGGTTCAAATTCCCGCGTATGATGTATTTTTGACGGCTCCTTCAAATGCTTCTTTCTCGGTGTCTTTATCGACGGAGGCTGGATCCTAGCCCCACCAGGCATTATGATCGGGTTATTTTGAAACGTTCGAGGGGCGGAGTCCCCTCATTCGTTCAGGAAATTGTACAAGGTTGTACAGCTACGAACCTCCAATTTTTGTTCCTCTTGGAAACAAAATAGAACAAAGATAGAATGAATTTCATACGAACACAACTTGGTTTTCATGGATGTATCAGTGTTGCTTGTATCAGCAAGAGTGGTGGTTTAACTCTTCTTTGGCAGCAAGATTTGAATTTTCAACTAAATTCACTTTTCTCGTCCGACATTGATGGTTGGGTACATCTGGATGGTAAGAAATTGCGCCTTACTGGGTTTTATGGCAGCCCTTCGCATGTTGCCTCCTCTGCCTCCTGGACTCTCTTGAAACATCTTCGTGGTAGTAATGATGTCTCTTGGCTTGTTGGTGGGGATTTTAACAAGGTTCTCCACCATTATGAGAAAACAGGTGGTCAACCCAAAGCTGATCAGGATATCCTTTAG

mRNA sequence

ATGGTTGTGACTGAGATTGAGCCGATGCATCTAAACAGAAATTCTTTGTCGTCACCGGCTCCCCCTCCCAGTGCTGTTAGTGACCTGGGGCAGCAACCGATTGTTCTGGTGGAGGTTAAACTGTCTGGGCAAGCTGCATCTATTTCGGTGCCATGTTCACACGTGGAGTCCAGATCCAGTGTTCCAGTGCTAGCCCAAGACTCTGCCCCCTCAGCCTTTATGTTATTGGACCTCCTAGCACCTTTCGACCCATCACTGTCTATAGCCCCTGACCAAAAGAAAAAGAAGTGGAAAAGAGTGGCATGTGAGCAGTCCAAAAATACAGTCAAGAGTGGTGGTTTAACTCTTCTTTGGCAGCAAGATTTGAATTTTCAACTAAATTCACTTTTCTCGTCCGACATTGATGGTTGGGTACATCTGGATGGTAAGAAATTGCGCCTTACTGGGTTTTATGGCAGCCCTTCGCATGTTGCCTCCTCTGCCTCCTGGACTCTCTTGAAACATCTTCGTGGTAGTAATGATGTCTCTTGGCTTGTTGGTGGGGATTTTAACAAGGTTCTCCACCATTATGAGAAAACAGGTGGTCAACCCAAAGCTGATCAGGATATCCTTTAG

Coding sequence (CDS)

ATGGTTGTGACTGAGATTGAGCCGATGCATCTAAACAGAAATTCTTTGTCGTCACCGGCTCCCCCTCCCAGTGCTGTTAGTGACCTGGGGCAGCAACCGATTGTTCTGGTGGAGGTTAAACTGTCTGGGCAAGCTGCATCTATTTCGGTGCCATGTTCACACGTGGAGTCCAGATCCAGTGTTCCAGTGCTAGCCCAAGACTCTGCCCCCTCAGCCTTTATGTTATTGGACCTCCTAGCACCTTTCGACCCATCACTGTCTATAGCCCCTGACCAAAAGAAAAAGAAGTGGAAAAGAGTGGCATGTGAGCAGTCCAAAAATACAGTCAAGAGTGGTGGTTTAACTCTTCTTTGGCAGCAAGATTTGAATTTTCAACTAAATTCACTTTTCTCGTCCGACATTGATGGTTGGGTACATCTGGATGGTAAGAAATTGCGCCTTACTGGGTTTTATGGCAGCCCTTCGCATGTTGCCTCCTCTGCCTCCTGGACTCTCTTGAAACATCTTCGTGGTAGTAATGATGTCTCTTGGCTTGTTGGTGGGGATTTTAACAAGGTTCTCCACCATTATGAGAAAACAGGTGGTCAACCCAAAGCTGATCAGGATATCCTTTAG

Protein sequence

MVVTEIEPMHLNRNSLSSPAPPPSAVSDLGQQPIVLVEVKLSGQAASISVPCSHVESRSSVPVLAQDSAPSAFMLLDLLAPFDPSLSIAPDQKKKKWKRVACEQSKNTVKSGGLTLLWQQDLNFQLNSLFSSDIDGWVHLDGKKLRLTGFYGSPSHVASSASWTLLKHLRGSNDVSWLVGGDFNKVLHHYEKTGGQPKADQDIL

Homology

[Close]

BLAST of Moc03g18950 vs. NCBI nr
Match: KAF5443558.1 (hypothetical protein F2P56_036105, partial [Juglans regia])

HSP 1 Score: 89.7 bits (221), Expect = 3.1e-14
Identity = 51/140 (36.43%), Postives = 73/140 (52.14%), Query Frame = 0


Query: 74  MLLDLLAPFDPSLSIAPDQKKKKWKRVACEQSKNTV---------KSGGLTLLWQQDLNF 133
           +L DL+   DPSL    + K K      C+   +           +SGGL+LLW+ DL  
Sbjct: 19  VLRDLITNEDPSLVFLQETKLKARAMENCKFRLHLTHCFTVDCVGRSGGLSLLWKGDLRV 78

Query: 134 QLNSLFSSDIDGWVH-LDGKKLRLTGFYGSPSHVASSASWTLLKHLRGSNDVSWLVGGDF 193
           ++ S     ID  +   DG + R TG YG+P  V    +W LL+ L    D  WLVGGDF
Sbjct: 79  RVQSFSLHHIDALIQDGDGPEWRFTGVYGNPEVVNRYLTWNLLRRLNSGVDGPWLVGGDF 138

Query: 194 NKVLHHYEKTGGQPKADQDI 204
           N++LH  EK GG+P+++  +
Sbjct: 139 NELLHFNEKRGGRPRSENQM 158

[Close]

BLAST of Moc03g18950 vs. NCBI nr
Match: MBA0620387.1 (hypothetical protein [Gossypium davidsonii])

HSP 1 Score: 87.0 bits (214), Expect = 2.0e-13
Identity = 47/117 (40.17%), Postives = 64/117 (54.70%), Query Frame = 0


Query: 92  QKKKKWKR------VACEQSKNTVKSGGLTLLWQQDLNFQLNSLFSSDIDGWVHLDGKKL 151
           +KK  WKR      V   +++N    GGL L W++D    L S   + ID  V  D  + 
Sbjct: 218 EKKTSWKRIKPMATVIQTKAENKGSRGGLCLAWKRDTEISLQSYSRNHIDIMVKEDNDEA 277

Query: 152 --RLTGFYGSPSHVASSASWTLLKHLRGSNDVSWLVGGDFNKVLHHYEKTGGQPKAD 201
             R TGFYGSP    SSA+W LLK L       WLV GDFN++++ Y+K GG+P+ +
Sbjct: 278 EWRFTGFYGSPYVNNSSATWNLLKKLGQDKSHPWLVNGDFNEIMYSYKKCGGEPREE 334

[Close]

BLAST of Moc03g18950 vs. NCBI nr
Match: XP_012851712.1 (PREDICTED: uncharacterized protein LOC105971405 [Erythranthe guttata])

HSP 1 Score: 86.7 bits (213), Expect = 2.6e-13
Identity = 45/115 (39.13%), Postives = 65/115 (56.52%), Query Frame = 0


Query: 91  DQKKKKWKRVACEQSKNTVKSGGLTLLWQQDLNFQLNSLFSSDIDGWVH--LDGKKLRLT 150
           D+ K KW        K    SGGL L+WQ+D++ +L S  ++ ID  V+      K R+T
Sbjct: 45  DKVKNKWNLNGVSVDK-IGNSGGLALMWQKDIDVRLISYSNNHIDAEVYERNHNSKWRVT 104

Query: 151 GFYGSPSHVASSASWTLLKHLRGSNDVSWLVGGDFNKVLHHYEKTGGQPKADQDI 204
           GFYG P +     SW L+++LR    + WL+GGDFN++L + EKTGG  +    I
Sbjct: 105 GFYGYPEYDRKYLSWELIRNLRDHRTMPWLLGGDFNEILSNSEKTGGNARLPASI 158

[Close]

BLAST of Moc03g18950 vs. NCBI nr
Match: XP_038688711.1 (uncharacterized protein LOC119987879 [Tripterygium wilfordii])

HSP 1 Score: 86.7 bits (213), Expect = 2.6e-13
Identity = 44/99 (44.44%), Postives = 59/99 (59.60%), Query Frame = 0


Query: 100 VACEQSKNTVKSGGLTLLWQQDLNFQLNSLFSSDIDGWVHLDGKKL--RLTGFYGSPSHV 159
           V C  +     S GL LLW++  + QL S  +S IDG  H  G+ +  RLTGFYGSP + 
Sbjct: 54  VGCIATSGVDGSTGLALLWREGFSVQLKSFSNSHIDGLTHCVGETVSWRLTGFYGSPIYQ 113

Query: 160 ASSASWTLLKHLRGSNDVSWLVGGDFNKVLHHYEKTGGQ 197
               SW LL+ LR  + + WLV GDFN++L   EK+GG+
Sbjct: 114 KRINSWNLLRRLRDCSSLPWLVLGDFNEILDSSEKSGGR 152

[Close]

BLAST of Moc03g18950 vs. NCBI nr
Match: XP_012857846.1 (PREDICTED: uncharacterized protein LOC105977118 [Erythranthe guttata])

HSP 1 Score: 86.7 bits (213), Expect = 2.6e-13
Identity = 45/115 (39.13%), Postives = 65/115 (56.52%), Query Frame = 0


Query: 91  DQKKKKWKRVACEQSKNTVKSGGLTLLWQQDLNFQLNSLFSSDIDGWVH--LDGKKLRLT 150
           D+ K KW        K    SGGL L+WQ+D++ +L S  ++ ID  V+      K R+T
Sbjct: 45  DKVKNKWNLNGVSVDK-IGNSGGLALMWQKDIDVRLISYSNNHIDAEVYERNHNSKWRVT 104

Query: 151 GFYGSPSHVASSASWTLLKHLRGSNDVSWLVGGDFNKVLHHYEKTGGQPKADQDI 204
           GFYG P +     SW L+++LR    + WL+GGDFN++L + EKTGG  +    I
Sbjct: 105 GFYGYPEYDRKYLSWELIRNLRDHRTMPWLLGGDFNEILSNSEKTGGNARLPASI 158

[Close]

BLAST of Moc03g18950 vs. ExPASy TrEMBL
Match: A0A7J8S2N7 (DUF4283 domain-containing protein OS=Gossypium davidsonii OX=34287 GN=Godav_006107 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 9.6e-14
Identity = 47/117 (40.17%), Postives = 64/117 (54.70%), Query Frame = 0


Query: 92  QKKKKWKR------VACEQSKNTVKSGGLTLLWQQDLNFQLNSLFSSDIDGWVHLDGKKL 151
           +KK  WKR      V   +++N    GGL L W++D    L S   + ID  V  D  + 
Sbjct: 218 EKKTSWKRIKPMATVIQTKAENKGSRGGLCLAWKRDTEISLQSYSRNHIDIMVKEDNDEA 277

Query: 152 --RLTGFYGSPSHVASSASWTLLKHLRGSNDVSWLVGGDFNKVLHHYEKTGGQPKAD 201
             R TGFYGSP    SSA+W LLK L       WLV GDFN++++ Y+K GG+P+ +
Sbjct: 278 EWRFTGFYGSPYVNNSSATWNLLKKLGQDKSHPWLVNGDFNEIMYSYKKCGGEPREE 334

[Close]

BLAST of Moc03g18950 vs. ExPASy TrEMBL
Match: A0A803QPB7 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 3.7e-13
Identity = 43/92 (46.74%), Postives = 54/92 (58.70%), Query Frame = 0


Query: 110 KSGGLTLLWQQDLNFQLNSLFSSDIDGWVHLD-GKKLRLTGFYGSPSHVASSASWTLLKH 169
           KSGGL LLW +D + Q+ S   S ID  V  + G   R TGFYGSP       SW LLK 
Sbjct: 523 KSGGLALLWSKDYSVQIKSYTVSHIDAIVENNLGFSWRFTGFYGSPDPGGRRESWKLLKR 582

Query: 170 LRGSNDVSWLVGGDFNKVLHHYEKTGGQPKAD 201
           L+     +W+ GGDFN++++H EK GG  K D
Sbjct: 583 LKTMFSGAWVCGGDFNEIINHNEKRGGGTKPD 614

[Close]

BLAST of Moc03g18950 vs. ExPASy TrEMBL
Match: A0A803PY54 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 4.8e-13
Identity = 42/92 (45.65%), Postives = 55/92 (59.78%), Query Frame = 0


Query: 110 KSGGLTLLWQQDLNFQLNSLFSSDIDGWVHLD-GKKLRLTGFYGSPSHVASSASWTLLKH 169
           KSGGL LLW +D + Q+ S  +S ID  V  D G   R TGFYGSP       SW LLK 
Sbjct: 537 KSGGLALLWSEDYSVQIKSFTASHIDALVENDLGFTWRFTGFYGSPDPGGRLESWKLLKR 596

Query: 170 LRGSNDVSWLVGGDFNKVLHHYEKTGGQPKAD 201
           +      +W+ GGDFN+++++ EK GG PK +
Sbjct: 597 ITTMFHGAWICGGDFNEIVNNKEKHGGGPKPE 628

[Close]

BLAST of Moc03g18950 vs. ExPASy TrEMBL
Match: A0A7J6GL46 (CCHC-type domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_014122 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 6.3e-13
Identity = 49/128 (38.28%), Postives = 63/128 (49.22%), Query Frame = 0


Query: 81  PFDPSLS--IAPDQKKKKWKRVACEQSK------NTVKSGGLTLLWQQDLNFQLNSLFSS 140
           P  P LS  I  +   K   R  C+  +      N   SGGL LLW  D    + S  S 
Sbjct: 493 PISPKLSHVIVANALNKLSPRSGCDSKRKMDVEYNNESSGGLLLLWNDDWEVSVKSFTSG 552

Query: 141 DIDGWVHLDGKKL-RLTGFYGSPSHVASSASWTLLKHLRGSNDVSWLVGGDFNKVLHHYE 200
            ID  V   G++L R TGFYG+P     S SW LL  L+   D+ W+ GGDFN++L   E
Sbjct: 553 HIDALVKCPGRELWRFTGFYGNPKASCRSESWRLLCRLKDLFDLPWICGGDFNEILSINE 612

[Close]

BLAST of Moc03g18950 vs. ExPASy TrEMBL
Match: A0A7J6DPD3 (CCHC-type domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_012929 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 6.3e-13
Identity = 49/128 (38.28%), Postives = 63/128 (49.22%), Query Frame = 0


Query: 81  PFDPSLS--IAPDQKKKKWKRVACEQSK------NTVKSGGLTLLWQQDLNFQLNSLFSS 140
           P  P LS  I  +   K   R  C+  +      N   SGGL LLW  D    + S  S 
Sbjct: 493 PISPKLSHVIVANALNKLSPRSGCDSKRKMDVEYNNESSGGLLLLWNDDWEVSVKSFTSG 552

Query: 141 DIDGWVHLDGKKL-RLTGFYGSPSHVASSASWTLLKHLRGSNDVSWLVGGDFNKVLHHYE 200
            ID  V   G++L R TGFYG+P     S SW LL  L+   D+ W+ GGDFN++L   E
Sbjct: 553 HIDALVKCPGRELWRFTGFYGNPKASCRSESWRLLCRLKDLFDLPWICGGDFNEILSINE 612

The following BLAST results are available for this feature:

BLAST of Moc03g18950 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF5443558.1	3.1e-14	36.43	hypothetical protein F2P56_036105, partial [Juglans regia]	[more]
MBA0620387.1	2.0e-13	40.17	hypothetical protein [Gossypium davidsonii]	[more]
XP_012851712.1	2.6e-13	39.13	PREDICTED: uncharacterized protein LOC105971405 [Erythranthe guttata]	[more]
XP_038688711.1	2.6e-13	44.44	uncharacterized protein LOC119987879 [Tripterygium wilfordii]	[more]
XP_012857846.1	2.6e-13	39.13	PREDICTED: uncharacterized protein LOC105977118 [Erythranthe guttata]	[more]

BLAST of Moc03g18950 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc03g18950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J8S2N7	9.6e-14	40.17	DUF4283 domain-containing protein OS=Gossypium davidsonii OX=34287 GN=Godav_0061...	[more]
A0A803QPB7	3.7e-13	46.74	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A803PY54	4.8e-13	45.65	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A7J6GL46	6.3e-13	38.28	CCHC-type domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_014122 P...	[more]
A0A7J6DPD3	6.3e-13	38.28	CCHC-type domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_012929 P...	[more]

BLAST of Moc03g18950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	GENE3D	3.60.10.10	Endonuclease/exonuclease/phosphatase	coord: 82..203 e-value: 5.0E-9 score: 38.3
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	SUPERFAMILY	56219	DNase I-like	coord: 109..192
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..24

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc03g18950.1	Moc03g18950.1	mRNA