Moc03g03340 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc03g03340
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Ribonuclease H
Location	chr3: 2528883 .. 2529233 (+)
RNA-Seq Expression	Moc03g03340
Synteny	Moc03g03340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCATCTGACAGAGTAGAGCATTACGAGCCTACGACAAATGAGGATGAGCTGCTCCTCAACCTCGACTTGTTGGAAGAAAGAAGAGCAATGGCCCAGCTACGCCTGGCGGAATATCAGGGCAGAATGGCCAGACATTACAATGCCCGCGTTCGACCTCGGGCCTTTCAGGTCGGACATCTGGTCTTAAGGAGGGTCCAAACGCATGTGGGTGCCCTTGATCCGGCCTGGGAGGGCCCGTTTGAGATCAAGGGCATAGTCCGACCTGGGACGTACATATTGGCCGATCTGAAAGGAGATGTCCTCGCGCACCCGTGGAACGCGGAGCACCTGAAGCGTTATTATCCTTGA

mRNA sequence

ATGCCATCTGACAGAGTAGAGCATTACGAGCCTACGACAAATGAGGATGAGCTGCTCCTCAACCTCGACTTGTTGGAAGAAAGAAGAGCAATGGCCCAGCTACGCCTGGCGGAATATCAGGGCAGAATGGCCAGACATTACAATGCCCGCGTTCGACCTCGGGCCTTTCAGGTCGGACATCTGGTCTTAAGGAGGGTCCAAACGCATGTGGGTGCCCTTGATCCGGCCTGGGAGGGCCCGTTTGAGATCAAGGGCATAGTCCGACCTGGGACGTACATATTGGCCGATCTGAAAGGAGATGTCCTCGCGCACCCGTGGAACGCGGAGCACCTGAAGCGTTATTATCCTTGA

Coding sequence (CDS)

ATGCCATCTGACAGAGTAGAGCATTACGAGCCTACGACAAATGAGGATGAGCTGCTCCTCAACCTCGACTTGTTGGAAGAAAGAAGAGCAATGGCCCAGCTACGCCTGGCGGAATATCAGGGCAGAATGGCCAGACATTACAATGCCCGCGTTCGACCTCGGGCCTTTCAGGTCGGACATCTGGTCTTAAGGAGGGTCCAAACGCATGTGGGTGCCCTTGATCCGGCCTGGGAGGGCCCGTTTGAGATCAAGGGCATAGTCCGACCTGGGACGTACATATTGGCCGATCTGAAAGGAGATGTCCTCGCGCACCCGTGGAACGCGGAGCACCTGAAGCGTTATTATCCTTGA

Protein sequence

MPSDRVEHYEPTTNEDELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEIKGIVRPGTYILADLKGDVLAHPWNAEHLKRYYP

Homology

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BLAST of Moc03g03340 vs. NCBI nr
Match: XP_022159003.1 (uncharacterized protein LOC111025448 [Momordica charantia])

HSP 1 Score: 185.3 bits (469), Expect = 3.1e-43
Identity = 85/116 (73.28%), Postives = 98/116 (84.48%), Query Frame = 0


Query: 1   MPSDRVEHYEPTTNEDELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGH 60
           MP+DR+E YEP  NE ELLLNLDLLE +R  AQLRL E Q RMARHYN R++PR+FQVGH
Sbjct: 514 MPTDRIEQYEPLRNEAELLLNLDLLEGKRETAQLRLVECQNRMARHYNTRIQPRSFQVGH 573

Query: 61  LVLRRVQTHVGALDPAWEGPFEIKGIVRPGTYILADLKGDVLAHPWNAEHLKRYYP 117
           LV  ++Q+HVG LDP+WE  FE+KGIVRPGTY+LADL+  VLAHPWNAEHLKRYYP
Sbjct: 574 LVSSKIQSHVGTLDPSWEELFEVKGIVRPGTYMLADLERSVLAHPWNAEHLKRYYP 629

[Close]

BLAST of Moc03g03340 vs. NCBI nr
Match: XP_022156070.1 (uncharacterized protein K02A2.6-like [Momordica charantia])

HSP 1 Score: 161.0 bits (406), Expect = 6.2e-36
Identity = 73/105 (69.52%), Postives = 93/105 (88.57%), Query Frame = 0


Query: 1   MPSDRVEHYEPTTNEDELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGH 60
           MP++RVE+YE   NE+ELLL LDL++E+R  AQLRLAEYQ +MARHYN+RVR R+FQ+G+
Sbjct: 246 MPTERVEYYERVRNEEELLLYLDLIDEKREAAQLRLAEYQNQMARHYNSRVRSRSFQIGY 305

Query: 61  LVLRRVQTHVGALDPAWEGPFEIKGIVRPGTYILADLKGDVLAHP 106
           LVLR+VQ HV  L+P+WEGPFE+KGIVRPGTY+LADL+G +L+HP
Sbjct: 306 LVLRKVQKHVEVLEPSWEGPFEVKGIVRPGTYMLADLEGKLLSHP 350

[Close]

BLAST of Moc03g03340 vs. NCBI nr
Match: XP_022156986.1 (uncharacterized protein LOC111023816 [Momordica charantia])

HSP 1 Score: 149.4 bits (376), Expect = 1.9e-32
Identity = 68/115 (59.13%), Postives = 89/115 (77.39%), Query Frame = 0


Query: 1   MPSDRVEHYEPTTNEDELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGH 60
           MP+ RVE+++   N + LL+NLDLLEE+R+ +QLRLAEYQ RMAR+YNARV+ R F+   
Sbjct: 730 MPTPRVENFDEQANSEALLVNLDLLEEKRSHSQLRLAEYQNRMARYYNARVKVRTFKPSD 789

Query: 61  LVLRRVQTHVGALDPAWEGPFEIKGIVRPGTYILADLKGDVLAHPWNAEHLKRYY 116
           LVL++V  HVGAL+P WEGP+ +  I+RP  Y+L+DL G  L HPWNAEHL+ YY
Sbjct: 790 LVLKKVMQHVGALEPNWEGPYRVLKILRPRAYLLSDLNGRQLPHPWNAEHLRVYY 844

[Close]

BLAST of Moc03g03340 vs. NCBI nr
Match: XP_022156049.1 (uncharacterized protein LOC111023017 [Momordica charantia])

HSP 1 Score: 139.4 bits (350), Expect = 1.9e-29
Identity = 65/115 (56.52%), Postives = 85/115 (73.91%), Query Frame = 0


Query: 1   MPSDRVEHYEPTTNEDELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGH 60
           MP+ RVE+++  TN +  LLNLDLLEE+R+ +QL+LAEYQ RMAR+YN R R R F+ G 
Sbjct: 76  MPTLRVENFDGQTNSEAFLLNLDLLEEKRSYSQLKLAEYQNRMARYYNTRERVRTFKPGD 135

Query: 61  LVLRRVQTHVGALDPAWEGPFEIKGIVRPGTYILADLKGDVLAHPWNAEHLKRYY 116
           L L++V  HV AL+P WEGP+ +  +VRP  Y+L+DL G  L HPWNAE L+ YY
Sbjct: 136 LNLKKVMQHVEALEPNWEGPYRVLKVVRPRAYLLSDLNGRQLPHPWNAEPLRVYY 190

[Close]

BLAST of Moc03g03340 vs. NCBI nr
Match: GFS38896.1 (hypothetical protein Acr_00g0060030 [Actinidia rufa])

HSP 1 Score: 133.7 bits (335), Expect = 1.1e-27
Identity = 67/120 (55.83%), Postives = 83/120 (69.17%), Query Frame = 0


Query: 1    MPSDRVEHYEPTTNEDELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGH 60
            MPS RV  +   TNE EL LNLDLLEERR  AQLR   Y+ ++A++YN RVR R+F  G 
Sbjct: 1203 MPSFRVSTFNKETNEAELRLNLDLLEERRESAQLRQTAYKCQVAKYYNQRVRHRSFLPGD 1262

Query: 61   LVLRRV-----QTHVGALDPAWEGPFEIKGIVRPGTYILADLKGDVLAHPWNAEHLKRYY 116
            LVLR+V     + + G L P WEGP+++  + RPGTY L DL G  L+HPWNAEHLK+YY
Sbjct: 1263 LVLRKVTLSTKEPNAGKLGPTWEGPYKVIKVSRPGTYWLEDLDGKALSHPWNAEHLKKYY 1322

[Close]

BLAST of Moc03g03340 vs. ExPASy TrEMBL
Match: A0A6J1DXL9 (uncharacterized protein LOC111025448 OS=Momordica charantia OX=3673 GN=LOC111025448 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.5e-43
Identity = 85/116 (73.28%), Postives = 98/116 (84.48%), Query Frame = 0


Query: 1   MPSDRVEHYEPTTNEDELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGH 60
           MP+DR+E YEP  NE ELLLNLDLLE +R  AQLRL E Q RMARHYN R++PR+FQVGH
Sbjct: 514 MPTDRIEQYEPLRNEAELLLNLDLLEGKRETAQLRLVECQNRMARHYNTRIQPRSFQVGH 573

Query: 61  LVLRRVQTHVGALDPAWEGPFEIKGIVRPGTYILADLKGDVLAHPWNAEHLKRYYP 117
           LV  ++Q+HVG LDP+WE  FE+KGIVRPGTY+LADL+  VLAHPWNAEHLKRYYP
Sbjct: 574 LVSSKIQSHVGTLDPSWEELFEVKGIVRPGTYMLADLERSVLAHPWNAEHLKRYYP 629

[Close]

BLAST of Moc03g03340 vs. ExPASy TrEMBL
Match: A0A6J1DP99 (uncharacterized protein K02A2.6-like OS=Momordica charantia OX=3673 GN=LOC111023037 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 3.0e-36
Identity = 73/105 (69.52%), Postives = 93/105 (88.57%), Query Frame = 0


Query: 1   MPSDRVEHYEPTTNEDELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGH 60
           MP++RVE+YE   NE+ELLL LDL++E+R  AQLRLAEYQ +MARHYN+RVR R+FQ+G+
Sbjct: 246 MPTERVEYYERVRNEEELLLYLDLIDEKREAAQLRLAEYQNQMARHYNSRVRSRSFQIGY 305

Query: 61  LVLRRVQTHVGALDPAWEGPFEIKGIVRPGTYILADLKGDVLAHP 106
           LVLR+VQ HV  L+P+WEGPFE+KGIVRPGTY+LADL+G +L+HP
Sbjct: 306 LVLRKVQKHVEVLEPSWEGPFEVKGIVRPGTYMLADLEGKLLSHP 350

[Close]

BLAST of Moc03g03340 vs. ExPASy TrEMBL
Match: A0A6J1DWM2 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111023816 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 9.0e-33
Identity = 68/115 (59.13%), Postives = 89/115 (77.39%), Query Frame = 0


Query: 1   MPSDRVEHYEPTTNEDELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGH 60
           MP+ RVE+++   N + LL+NLDLLEE+R+ +QLRLAEYQ RMAR+YNARV+ R F+   
Sbjct: 730 MPTPRVENFDEQANSEALLVNLDLLEEKRSHSQLRLAEYQNRMARYYNARVKVRTFKPSD 789

Query: 61  LVLRRVQTHVGALDPAWEGPFEIKGIVRPGTYILADLKGDVLAHPWNAEHLKRYY 116
           LVL++V  HVGAL+P WEGP+ +  I+RP  Y+L+DL G  L HPWNAEHL+ YY
Sbjct: 790 LVLKKVMQHVGALEPNWEGPYRVLKILRPRAYLLSDLNGRQLPHPWNAEHLRVYY 844

[Close]

BLAST of Moc03g03340 vs. ExPASy TrEMBL
Match: A0A6J1DS38 (uncharacterized protein LOC111023017 OS=Momordica charantia OX=3673 GN=LOC111023017 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 9.3e-30
Identity = 65/115 (56.52%), Postives = 85/115 (73.91%), Query Frame = 0


Query: 1   MPSDRVEHYEPTTNEDELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGH 60
           MP+ RVE+++  TN +  LLNLDLLEE+R+ +QL+LAEYQ RMAR+YN R R R F+ G 
Sbjct: 76  MPTLRVENFDGQTNSEAFLLNLDLLEEKRSYSQLKLAEYQNRMARYYNTRERVRTFKPGD 135

Query: 61  LVLRRVQTHVGALDPAWEGPFEIKGIVRPGTYILADLKGDVLAHPWNAEHLKRYY 116
           L L++V  HV AL+P WEGP+ +  +VRP  Y+L+DL G  L HPWNAE L+ YY
Sbjct: 136 LNLKKVMQHVEALEPNWEGPYRVLKVVRPRAYLLSDLNGRQLPHPWNAEPLRVYY 190

[Close]

BLAST of Moc03g03340 vs. ExPASy TrEMBL
Match: A0A7J0DQA8 (Ribonuclease H OS=Actinidia rufa OX=165716 GN=Acr_00g0060030 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 5.1e-28
Identity = 67/120 (55.83%), Postives = 83/120 (69.17%), Query Frame = 0


Query: 1    MPSDRVEHYEPTTNEDELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGH 60
            MPS RV  +   TNE EL LNLDLLEERR  AQLR   Y+ ++A++YN RVR R+F  G 
Sbjct: 1203 MPSFRVSTFNKETNEAELRLNLDLLEERRESAQLRQTAYKCQVAKYYNQRVRHRSFLPGD 1262

Query: 61   LVLRRV-----QTHVGALDPAWEGPFEIKGIVRPGTYILADLKGDVLAHPWNAEHLKRYY 116
            LVLR+V     + + G L P WEGP+++  + RPGTY L DL G  L+HPWNAEHLK+YY
Sbjct: 1263 LVLRKVTLSTKEPNAGKLGPTWEGPYKVIKVSRPGTYWLEDLDGKALSHPWNAEHLKKYY 1322

The following BLAST results are available for this feature:

BLAST of Moc03g03340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159003.1	3.1e-43	73.28	uncharacterized protein LOC111025448 [Momordica charantia]	[more]
XP_022156070.1	6.2e-36	69.52	uncharacterized protein K02A2.6-like [Momordica charantia]	[more]
XP_022156986.1	1.9e-32	59.13	uncharacterized protein LOC111023816 [Momordica charantia]	[more]
XP_022156049.1	1.9e-29	56.52	uncharacterized protein LOC111023017 [Momordica charantia]	[more]
GFS38896.1	1.1e-27	55.83	hypothetical protein Acr_00g0060030 [Actinidia rufa]	[more]

BLAST of Moc03g03340 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc03g03340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DXL9	1.5e-43	73.28	uncharacterized protein LOC111025448 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1DP99	3.0e-36	69.52	uncharacterized protein K02A2.6-like OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1DWM2	9.0e-33	59.13	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111023816 PE=4 SV=1	[more]
A0A6J1DS38	9.3e-30	56.52	uncharacterized protein LOC111023017 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A7J0DQA8	5.1e-28	55.83	Ribonuclease H OS=Actinidia rufa OX=165716 GN=Acr_00g0060030 PE=4 SV=1	[more]

BLAST of Moc03g03340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 22..42

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc03g03340.1	Moc03g03340.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0110165	cellular anatomical entity
molecular_function	GO:0140640	catalytic activity, acting on a nucleic acid
molecular_function	GO:0003676	nucleic acid binding