Moc03g03300 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc03g03300
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Gag/pol protein
Location	chr3: 2505077 .. 2518200 (+)
RNA-Seq Expression	Moc03g03300
Synteny	Moc03g03300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATACTTCTATTATTGCACTTTTAGCCGCGCAAAGACTTAATGGCGAAAATTACAAACAATGGAAGTCAAACCTAAACACTATTCTCGTGATAGATGATCTTAGGTTTGTCTTGCAAGAGGATTGTCCTCAAGCTCCTGCGCCTAACGCCACTGTGGCGGTGCGCAACGCCTATGACAGGTGGATCAAGGCCAATGACAAGGCCAAGGTCTACATCTTGGCGAGCATATCTGATGTGCTTGCCAAGAAGCACGAGGACATGGTCACCGCTAAGGAGATCATGGACTCGCTGCAGAGCATGTTTGGACAACCGTCCTCACAGGCTCGACATGAAGCCCTTAAGTTCATTTACAACTCCCGCATGAAGGAGGGCTCCTCAGTGCGAGAACACGTTCTCAACCTGATGGTCCACTTCAACGTGACTGAGTCGAACGGGGCCGTCATAGACGAGCAGAGTCAGGTCAGCTTTATTCTGGAATCTCTTCCGAAGAGTTTCCTTCCATTCCGCAGCAATGTGGTTATGAATAAGCTGGAGTACACTCTTACCACGCTCTTAAACGAGCTGCAGACCTACCAGTCTCTTATGAAATGTAAGGGACAAGAAGGGGAGGCAAATGTTTCCACCTCAAAGAGGTTCAACAGAGGATCGTCCTATGGAACCAGGTATGCGCCCTATTCTTCTGGAAGTAAGACTTTTAAGAAGAAGAAGGATGCTGGTAAGGGGTCTAAACCTGACTCAGCTGCTGCTGCCCAGAAAGGCAAGGTCAAGGTTGCAGAGAAAGGAAAGTGTTTCCACTGCAACATGAACGGGCATTGGAAGCGCAACTGCCCAAAGTACTTGCCCGAAAAGAAGAAAGCCAACGAAGGTAAATATGATTTACTTGTATTGGAAACATGTTTAGTGGAGAATGATGACTCCGCCTGGATACTGGATTCAGGAGCCACTAATCACGTTTGTTCTTCATTTCAGGGAATTAGTTCCTGGAGGCAGCTTGACGTCGGAAAGATGACTCTCAAGGTCGGAACGGGAGATGTCATCTCAGTTGTAGCGGTAGGGGAGTTCAAGTTGTTTACAAACAAGAATATGTATATATTATTAGATAATGTGTAAGTTGTTCCTAAAATTAAAAGGAACATAATTTCAATTTCTTGTTTGTTCGAACAGATGTATTCAATTTCATTTCATTTAAATGAAGTGTTCATTTCAAGAAATGGTGTTAATATTTGTTCAGCTTTACTTGAAAACAACTTGTATGTGCTAAGACCAACCATAACTAAAGCAGTTTTAAATACCGAGTTGTTTAAAAATGCTAAAACTCAAAATAAAAGGCAAAAAGTTTCTCAAAAGGAAGATACCTATCTTTGGCGCTTAAGATTAGGTCACATTAATCTCAATAGGATTGGGAGGTTGGTTAAGAATGACATTCTAAGTGAGTTAGAAGACGATTCTTTACCACCATGTGAGTCTTGTCTTGAAGGCAAGATGACTAAAAGACCTTTTACTGGAAAAGGTTATAGAGCCAAAGAGCCCTTAGAACTTATACATTCAGACCTTTGTTGTCCGATGAATGTTAGAGCTCGAGGAGGATATGAATACTTCATCTCTTTTATCGATGATTATTCAAGGTATGGTTATTTATACCTAATGTAACATAAGACTGAAGCCCTTGAAAAGTTTAAAGAGTACAAGACTGAAGTTGAAAATCAATTAGGTAAAACCATTAAAACACTTCGATCAGATCGGGGTGGAGAGTATATGGACTTGAGATTCCAGGACTATATGATAGAACATGGAATCACGTCCTCAACTCTCAGCCCCTGGTACACCTCAACAAAACGGTGTATCAGAAAGGAGAAACAGAACCCTGTTGGACATGGTTCGATCAATGATGAGCTATACTCAGTTGCCTAACTCGTTTTTGGGTTATGCAGTGGAGACTGCAGTTTATATTTTGAACGTAGTTCCATCAAAGAGTGTTTCTGAAATACCCTTTGAGCTGTGGAAGGATCGTAAACCTAGTTTACGTCACTTTCGCATTTGGGGATGCCCGGCACACGTGCTCATGACTAACCCGAAGAAACTGGAACCTCGTTCAAAAGTATGCCTATTCGTAGGTTACCCTAAAGAGACGAGAGGCGGTCTCTTCTTCAATCATAAAGAAAACAGAGTGTTTGTATCGACAAATGCTACTTTCTTAGAAGAAGGCCATGTTCGAGATCATAAACCACGAAGTAAGGTAGTAATTAACGAGATTTCCGAAGAGGCTACAAACACGTCAACAAGAGTTGTTGATCAAACTGGCACTACAACAAGAGTTGTTGATGAAGCCAGCACATCGCGTCAGTCACATCCACCTCAAGTGTTGAGGGTGCCTCGACGTAGTGGGAGGATTGTGTCACAACCTGACCACTACGTGGGTTTAACTGAAACTCAAGTTGTCATACCTGATGACGGCGTCGAGGATCCATTGACCTACAAAAAGGCAATGGAAGATACTGACGAGGACAAATGGGTGAAAGCAATGGACTTGGAAATGGAGTCGATGTACTTCAATTCCGTTTGGGAACTTGTATATCAACCTGACGGGGTAAAACGCATAGGGTGCAAATGAATCTACAAGCAAAAACGAGACGTCGAAGGAAAGGTACAGATCTATAAGGCGAGACTTGTGGCAAAAGGCTACACACAAAGGGAAGGAGTGGACTATGAAGAAACCTTCTCCGCTGCAGCTATGCTTAAGTCTATTAGAATACTTTTGTCCATTGCCACATATTATGACTATGAGATATGGCAAATGGACGTCAAGACTGCTTTTCTAAATGACAATCTTGAAGAAAGTATTTATATGTCTCAACCCGAAGGGTTCATAGAACAAGGTCAAGAACAAAAGGTTTGCAAGCTTAAACGATCCATATATGGACTCAAACAAGCATCTCAATCTTGGAACATAAGGTTCGATACTGCGATCAAATCTTATGGTTTTGACCAAAATGTTGATGAGCTTTGTGTATATAAGAATATCGTCAACAACACCGTAGCCTTCTTAGTGTTGTATGTGGATGATATTCTACTCATTGGGAATGATGTAGGATACCTTATTGACATAAAAAAGTGGCTAGCGACTGAGTTCCAAGTGAAGGATTTGGGAGAAGCTCAGTATGTTCTTGCCATCTAAATTCTAACAGATCGCAAGAACAGAACGTTAGCCCTGTCTCAAGCAACTTATATCGACAAGATGCTGGATCGATATTCGATGCAGAATTCCAAGAAAGGTTTACTACCCTTCAGGCATGGAATTCATCTGTCTAAGGAGCAGTGTCCTAAGACACCTCAAGAAGTTGAGGATATGAGACGTATACCCTATGCTTCAGCAGTGGGCAGCCTGATGTACGCTATGCTGTGCACTAGGCCTGACATTTGCTATGCGGTAGGGTAGTCAGTAGGTACCAATCCAACCCAGGATATGATCACTCGACTGCTGTTAAGGGAATCCTCAAGTATCATAGGAGAACGAGGGACTACAAGCTCGTGTATGGCGCTAAGGATTTGATCCTTACAAGATTACTCCCACCAGCACGATCCCGAGACCCAAGAGGATAGCGAGGAAGACATAGTAGTGGTGCTCGAGAGAAACTCGTTGAAGAAACGTTCTTCAAAGGTAAAGTTTCCTCTGTATTTTCATTCTTTGAAATTCGATTTTATAACTCGAAAATCAGCAACGAAAATCTGTTTCCGCTCTGGGATTCACATCCCTTCAGTACTAAGATGGGACCTCAAACGCGATTAGGAATATATGTTGGTTTTGATTCCCCATCAATCATTAAATATCTTGAGCCCTTGATAGGTGCTGTATTTATTGCTCGATTTGCTAATTGTCATTTTAACGAGACAAATTTTCCAACATTAAGGGGAGGAATTAAGAAGTTGGAAAAATAAATTACATGGAATGCATCTTTATTGTCTCATTTAGATCACCATACAGATCGAAATGAACTTGAGTTCAGAAGATAATCCATTTTCAAAATATAGCAAATCAACTACCAGATACATTTATAGATGCTAAGAAAGTGACTAAGTCATATATTCCAGTTGCAAATGCTTCATCAAAAATTGATATCCCAATACAACAAGTCATTAATAAGTCTGCGACACGCCAGAAGCGTGAGAGACCAATGGGTTCTGAAGATAAAAATCTTCGAAAATGAAAAGTAGTCAATAATCAAAATGACTCGATTGAGAATATGGATATTCCAGAAGAAAACCTAAACATGACTACTCATGAAAATACCGAGGAATGTCAAGTACCTGAAGATAATAATGAGATTTCAATACATTACGTCATGCAGGGATAAGATGGAACCGAACTCATGTAGTTATTGACAACATTTTTGCTTATAATGAGCTTTTGACATTATATTCGAAAGTGAAGATTCTGAACCAAAATTTATCAAATAATGTCAACAAAGAAAGGATTGGCTTAAATGGAAAGAAGCAATCCAGGCAAAATTAAACTCACTTTCAAAACGTCAAGTCTTTAGACCAGTAGTCCGAACACCAGCGTTAAGCCTGTGGGATACAAATGGGTATTTGTAAGAAAAAGAAATGAAAACAATGAGGTCACAAGATATAAGGCAAGACTGGTTGCACAAGGTTTTTCACAAAGATTTAGTATTGATTATGAGGATACATATTCTCCAGTGGTGGATGTGATTACACTAAGATATTTAATTGGCCTGACTATGTTTGAAAGTCTTGACATGTATCTTATGGATATAGTCACAACATATTTATATGGATTTCTTGCTAATGATATATATATATATATATATATATATATATATATATATATATATGAAAGTCCCTAAAAGATTTAATGTGGTGCAATCGCCTGAGTGGATATTTGTTGAAGGAAGGATATCAAAATAATCCAATTTGTCCGTGTGTTTTTATACAGAAATCACCGTCAGGATTTGCTATTATAACTGTGTATGTTGATGACTTGAATATAATTGGAACTTTTGAAGAGCTTCCAAAGACAATAAAGTATCTTAAGAAAGAATTTGAAATGAAGGATCTCGGAAAAACAAAATTTTGCCTTGGCTTGCAAATTGAACATTTAACAGATGAGATATTTGTGCATCAATCAACTTCTACAGAAAAAGTTTTAAAAAGATTTTATATGGACAAAGCACATCCATTGAACATTCCAATGAAAGTTCGTTCACTTGATGTGAAGAAAGATATATTTTGACCTCGAGAAGATAATGAAGAAATTCTTGGTCTTGAAGTACCATATCTTAGTGCAATTGGTGCACTTATGTATCTTGCTAATAATACAAGACCAGATATAACATTTTCAATTAATTTATTAGCAAGATATAGTTCTTCTCCAACAAAAAGACATTGGAATGGAGTTAAGCGTATATTCCGCTATCTTCGAGGAACGATTGATATGAGCTTGTTTTATTCAAACAAATTAAATTTTTTGATCTAGTTGGTTATGCAGATGCTGGATATTCATCTGATCCACACAAAGCTAGATCTCAAACAGGTTATTTGTTCACATGTAGAGGAACTGTTGTATCATGGCGATCAGTGAAGCAGACCATAACAGCTACCTCCTCAAATCATGCTGAAATTCTTGCAATTCATGAAGCTAGTCGAGAATGTGTATGACTAAAATGAATGACTCACCACATTCGTGGAACATGTGGCTGTGTCTCTTAATAATCTTCCAATGATATTATACGAATATAACATAGCATGTATAGCCTAAATCAAAAGACGATATATTAAAGGGGATAGAACAAAACATATCTCACCTAAGCTCTTCTACACTCATGATCTTGAAGAAAATGACAACATTAATATTCAACAAATTTGTTCGAAGGATAACCTGGCATATTTATTTATAAAGGCATTACTTACTACAACATTTGAAAGATTGGTGTGCGACATTGGAATACGACAGCTCAGAGATCTCAAGTGATGTTCCTATAAGGGGGAGCATAATTTATTGTATTCTTTTGGGTTTGTTAGATTATATGAAATATGTACTGTTTTTCCTTCACTATGATTTTTTTTCCCATTGGGTTTTTTCGTAGTAATGTTTTAACAAGGCATGTTTCATATAAACAATGGGCATCTAAGAGGGAGTATTATGAACATTATCCAAATTAGATGCCCAACCTCGGTATCAATATATGTGATGTCTAAATAACCCTAAATCCATGTGTAAATTTCTTTCATTTGCTCAGTGTCTCCAAGTGTCAAGTTGACCCTTATCCATGTGCTTAATTCTCAATATCTCACGTGTCTATTTTCTACCTATTATTAGTGTCCAAATGTAAGACCTCATGGTTGTATAAATTGCCTATAAATAGTGGCCATTAATGGATAATGGTAGTGAGAATTTGAGTGGATTTTGGTGGGAAACTTTGTTGAATTTTCAAGAGAAATTGGAGAGAAATTGAAGAGAAAATTTTCTTTTTATTTTCTAAATTTATGTTAATTTCTAAAATTGTTTCTTTCAATTTTTCAAATTCCAAATTTATATTTCAATTTTATATTTTGTCCAATCTCGTATTTTCTCGTTGTTCGTGACTTGTGATGCCTCAATTTGCTCTATAAATTTACAAGATTTTTTCATTTGTTTTTACTATTCTCACTCTCTCTATCATTTTTTCCTTATTCTAGCTCCCATTTATTATTATTTTTTGGATAATTTAGGTGAGTGACTAAATTTTGACACCTATTTTTAAAAATGACCATTAATTTTTAGTTTTGCACAAATGGTTAAAGGGTATTTTAAAAGTCTTAAAAAATGGGGTGATTTTCCAACTTTACCATTTTCCATGTTTTTTTTCGGTTTTTTCTCCTATTCAACCAGCTAACATACTTTCCCTAAAAAAACCTAACATACTAATATATTATTTTAATATTTTGTTTTGAATTTGAATTAATTTAAATGAATTGTCATTGTTCTACTGTCTCCCATCTCATCGATCTGTCATTGTTCTATTGTATCTCTTTCTTCCAAGCTCCCTCTTCTCTCTCGGCCATAATTAAGTTTCATTCACCCACTGATTCTCTTCATCAGACTTTGTGTCCTCCTTTAAAACATTTGATGAATTATTAAAAGTTGAATGTTAATAGATGTATATACCAATTGAATAATTATTAAATTTAGAACGGCAATACATGCATATATCACTATGCAACTCAATTATCAAAATTAGAAGGTCAATAAATGGATAGACCAATTTAAGAATTATTCAATTTAGAACATGTATATAGCACTATGCAACTCAATTACTAAAATTAGATGGTCAATACATGTAGATACCAATTCAAGAATTTATTTTCATTGTTCTCATCATATTCCAATCAAATCCTTGAGGGGACGACCTTGTTTGGTACTGCAATTGATCAATTAGGGTATACTTGCACTACTTTTCTCCTAGTTGTGAAGAAGCGAACAGTTGCACATTTTCTTCTTGTGACCCGTGTTCCTGCACTTGCTTCATTTGTTCACCTGAGTGGTTCTATGTTTAGATCCTTGTATTTGTGTTTACGTTGACCAACTCGTCGAACATTGCTTGGGAGGTTCTACGTTTAGATTCTTATGTTGGCTTGTTCCATTCAGATTTATGTCCAATTGGTGTGATAGGCTCTACATATGCAGCAACGAGTGACTCAATGCTATACGAATAATCAATCAAAGTGTGTACGTTATTATTTTTCTGTCTAGATGCTGCAATTTCATGTGAACATGATATCTGTAGGCAATCAAACTCCCTGCACGAGCAAGTACCAGTGCTTAGATAAATTATACCATCCATCCCACTGTTGTTCACATTGAATCAATATGAGTTAATAAATTCAATTTCGTAGCAGGTTGACTTTCAAAACTCGATGGCGAGACACTCTTTGGTATAGTTGGAGTGCGACATAGTGCGAGTTTACTAATAAATACGTTACTTACAAAATGATCATTAAAGTAATGCCTCCATAAACTCAAGTAGTGTTGGTGGTTGTTGCGAGTCCTCAACCGATGTGAATGCAACTGAAAGTGTGTACTATTCCCGCTAATTGTAGTATAACATGGTCGAAATCCAGACGGACTAAGTGCTAAATTTCAAGTTTGTGTTCAAGAATACCAAATATACACAAATAAAATAATCAAGTAGTACGTTGCTAGCTATAAACAATTAAGTATAAAAGTGCAAACAAATGACTCCAAGAAAAGAAGACACAACTAACAGATGGTGGGGCAAGAAAAGCTTTAGCACAGTGTTGCGTCCACACAACTAAGTCGACAACACGTGCAAGTATACACAAATAGCCAGTTGTAGTACGTAATGAGATCATATCCACAGGGGTTTTTGGTTTATATTTTAACGATAAAAGCAAATACCAATAATTAAAAATGCACAGAGTTGAGTATGAATATTGCCTAGAAGAAGTAAAATAAAGGAATAACAGGATGACAGAACGTTGCAAGGGACAATAGTTTCAAGGTTATTGACACAAAGAAGTAGCAGCACAGAAAGCGATAACGAGGGATTAAAAGATATGAAGATGGCGGGGGAGATTCAACATGCTTTAACACGTTATCAACCTATCCTCTAGCGTAGCTAACATTTATTAGTGCCCAGCTCGACTCGGTTCCCTTCCGAGACACCCCAAACATGAGTAAATACAACTCCAAGCAATAAACCCAAGCTATAGACATGATTAGGGGACCCCATTCCTGAGTATCCCTATAGCTATAGAAAAGCGCTGATCACAAGCGAAACAAGTCAGCACCCACAAGCCCTTCCGGGTCAATATAGAAGCTAGCATACACGAAACAGTGGCCAACAGTAACGCAAAGATTTAAGAAATAAATTCAGATTTGCTTAAAAATAAATGTAGCAGCTAAAGGTTCGGTCTCAAGTCAGTTACAACATTTGATCTAAACAACCGAAAAAAAAAAAAAAAAAAAAAATATATATATATATATATATATATATATTTAAATTACTATTTTTTTAGTTGTTTTCTTCTATTTTCTCAAAGATAAACTTTTTGTTTTAAAAATTATTTTTAAAAGATAATTTGTTCTTAGAATTTAAAAAATAAAAAGAAAGAGTTTTATTAAGTCTTTATCTTTTTATTATCCTTTTTAAATAAGAATTCGTTAGGGTTTGTTATTAAAGCCCTTAAACCCTAGGTTTTATTTTTCTTAAACTGTTAGACCTAGTTTTCTCTCCAAGAAAAAAAGAAAAGAAAAGAATAAGAGTTTTGATATTTTCTTTCAAAGATCGGTAAGTTTTTCTTCCTCATTGTTTTGGTTTTATTTTTCTTGATCTAGTTCTTTAATTCAGGTTATTGGAAAAAGTTTTGAGGTCTTTGTTTTTTAGAATAAAAAATTTTAAGGACTTTTGCCCTAAAAATTTTCCAGAATTTTTGGTTTGAATCTTTTTGTTTATGAGACTGTTTTTGGGCTATTTTGAGACTGTTTTTGCATAAAAAGCTTACCTATTTGTATTTTATAAATTATAGATTGTTGTTATGATTTTTACACGAAAAATTATATGTTTTTACCAAGTTTTAAAGGTTTTCTATAAAGTTTTCATATCTGATTTTTCTATAAAAATCAGTAAATTGTTAATTATTTTATGGAAAATTCTTTGAAGTTTTATTTTATAAAATATGAAATTTTCCAGATTTAAAATCCCCAAATTTTCAATTGATTATAAAGGCTTTTAAACTTGTTTTGTTGAAAAACATTTTGTAAATTTAGTCCGTATTAATTTGTACCGATTCTTGTATTTTTAAAGGTTGTTATTGTTGATTTTAGAGGGTTTTTAACCCAGTTTTCAGATATGGTTTTGTAGCCCCAAATCCATACTTTCCTAATTATTTTGCATAAAAAATTGTTTTGAATGGAAAAAATTAGGTAGATTAGATTTGGTTAGTAATTGATTGAATTTTAAATCCTTGTATAGGATTTAAGGATTGCTTTTGGATATTGGTTGTTTATAGGCCTCTAAGTTGACAACTACCAAAGAGGAAGTTAATAAGATTTGTAGGATTTCTGAAAGAGGTAAGTAATTTGTCATATCCCTTCGAAAAAGTATTGTAAGTAATTTACCATATCCCTTCGAAAAGTGTTGTAAGTGATTTCAAATCCTTCGAAAAGTATTGTAAGTGATTTATCATATTCCTTCGAAAACTAAAATGTATTTTGGATTTGATATGAAGATTTGAAATTGATATCTTCCCTATGAAATTGAAGTTTTATTATGGATTTGAAAACTAATTTGACAATTGATATTATGTTTATTTGCAAAGTATTTGAAGTATCCTTATATGATTTGATAAAGTTTTGTTTAGATTTATTTAAAGATTTGAAATTGAGATTTTGTTTATTTGTGAAATATTTGGAAACATGTTTTGGAGGATTGATAAAGTTTGTTTTAAATTATTCAAATGTTTTGAATTAATTTAATATTGAAAGTAAGTATTTGTTTGCATTTTATTTGAAAGATATTTTCATTGATTTGATAGGGCTATCTGGATATGCCATGATTTTGTTTTGAGGAACGTTTTGCTTATTTGGGGTAGTAGCCTAATTTGGAATTGATAGATTTTTGTTCTGGCTTATTTGTGGGAAGACACTTTTGTGGTTTGGCATTTCTTGGGAATGAAGATTCATGTGTGTGTTATTCACTCACGTGGCCTCACACTTAAGTAATCGTTCTGTTTATTCTGGTCGATATTATTTCGACAACTCTGTTCTGGTCGATATTATTTCGACAACTCTATTCTGATCGATATTAATTCGACAACTCTGATAGAAGCTTCTAATTGATTGGTGTTACCGACGAGTAACCACATATGTTCTGCTACCCAAATAATGCAACATTCCACTTTGATTTTTGAAAGTATGAATGAATGTAGGATTGTTTTGAATGTTTGAATGATTTAGTTATTCAAAAGTTTGAAAGTCATCTTTCTATTTAGTTAAGTTAGTTTAGAAAAATTCTGTAAAGAAATTGCTTCCGCTGAATAATTTTAGTTCTTAAGGTTTCTTGAAAGTTACGTTTCCGCATTTTGTCAGAATAACCGTATTAGAAAATACAGGTTGTTACATGTGAACCTCCCCCAAAATGGGGTTTCGCTCATAATGGGTGAAGAAAACAAAATGGAAGAAGAAGAAATACAACCCATAGTAGAAAATTGGCTAAATGACAGAGAAGAAGAAGCAGTCAGTTCGTTCCAGCAGGTGAACTTTCCCTTTCTGGCGTCAGCTCTCCTCCCGAAAATGGGTATATTTTGTTCCTTGGTCTTTTCAGCTCTCAATTTTTGTCTTTCTTGGGATTTGCGTGTCTGTCGGCTAGGGCAACATTCCCTTTAAATATTGGGACCTAGGGACCCGACTGGGGATTGTACGGACATAAGTGAATCCCATGTTTTTGAATTAACTGTACGGACACCCATGCTCTAGCATCGCTATGCTCCAACTTTTATATGCTATGACTTAAAAATGTTTTGACTTTTCTTCTTTGGTTCAACACTTCCTTCTCTTTTTAGCTTTTTCTTTAAAAACATGTGCAAATGAACCACAAATACGATAGTTTATGCTGTTTTTGGCCAAAGTTCTCAAAACTAAGGATATTTAGCTCAGAATTTGCAATTAAACGCTATTTATGCTAGTTATGGCCTAAAACCGATACACTTTGACATTTTAATGCACATTTTCACCCAAATAATCACCAGAATAACTATCTTTTGGAGAGTTATCACACAGACGGCAAAAAAGGAGAAAACATAAATGGGGTTAAGATGGGGAGATCCTTTAACTTGCATTCACTCACAGCCTACACTCTAGCATTAAGATCGCAATTGATGCTCAAACCGATCTGGTTCTCTTTGGAGACACCCAATGTAACGCCCTGAGTCTAGGATTTGGACCAGGATTCAGAATTTGGATTTGACACCTCTTTGCCCCGACATCCCCCTGCATCCCCTGCGACCCAATCGCACCACCGTTTAGTTCTGAGCTACTTAGAAGAGCATAGACTATCCCTTCAAATCAACACGAGTTCTTCCAACATGCTTTGTCCTCACTCACATGCTTCCTAGTAAAGCAATTAGAAGGTCACCCAGTCGGAGATTGCTCCCAGTCAAGTACGCTTAACTTTGGAGATCTTACGATTGAGTTACCGAAAAGGAATGTGCACCTTGTCAGTATAGGTAGTAACGATCATTTATTTTAAGCTTTCTTTAACCATTCTTCCATGGTCTCAGGATCCCTCTCATTTGGATGTGCGTACTATCCAAGATCCTACAAAGATTCGAAACGAAGTGAATTCCTAAAATTAGTGCAAGGGGTGATGACCGTGGCAGAATATCATAAAAAATATATAAAACTCTCCAGGTATGCATCTACTGTTATCGATGATGAGATTGACAGGTGTAGAAAGTTCGAAGATGGGTTGCGAGAGGAGATTGGGAGTCGCATTACTGCATCCGGATGGCAAGAGTTTGGGCCTTTAGTAGAAGCAGCCGCCAGGGTTGAAAAAAGTGTGTTGGAAGGAAAGAAACAAAGAGAAGTATCGGAAAATGTGCAAGGTTCTTTTTCTAGCACTATGAGTTCTTCAGATAATAGAAAGTTTCGAAGCAACGATAGAGGTTTTGTACCAGGGGTAGTGAGTCATAGCAAGTTTAAACCAAGATTTCATGAAACATCGAGTTTTTGAGAAAACACAAATGTTTCACGGCAGACTGCGAGTGGTTCAGGTCAATTTAGAAGACCTAGTAAAAGTCAGCACACCTTGCAGGAACTGGAGTCTGCATTTAGTTACAACATATCCTATTCTTCATGTCAGAAGTGTGGAAAGTTACATAATGGCCAGTGTTTGTGGGGAACAAATATTTGCTATAATTGTGGTCAGGTAGGTCACATGAGCAGAGAATATCCACAGCAAGTACATGAAGATAGTGTTTCGCAAGGTGCTTCCTCAAGACCGGTTGTTCAAGGATGTCCTGATACACAGATAAAACCATTCACAATGGGTAGCAAAGAACAAATCAATACAAGGAGTTCTAGCGAAGCAAAATCGAAAGGGTGA

mRNA sequence

ATGTATACTTCTATTATTGCACTTTTAGCCGCGCAAAGACTTAATGGCGAAAATTACAAACAATGGAAGTCAAACCTAAACACTATTCTCGTGATAGATGATCTTAGGTTTGTCTTGCAAGAGGATTGTCCTCAAGCTCCTGCGCCTAACGCCACTGTGGCGGTGCGCAACGCCTATGACAGGTGGATCAAGGCCAATGACAAGGCCAAGGTCTACATCTTGGCGAGCATATCTGATGTGCTTGCCAAGAAGCACGAGGACATGGTCACCGCTAAGGAGATCATGGACTCGCTGCAGAGCATGTTTGGACAACCGTCCTCACAGGCTCGACATGAAGCCCTTAAGTTCATTTACAACTCCCGCATGAAGGAGGGCTCCTCAGTGCGAGAACACGTTCTCAACCTGATGGTCCACTTCAACGTGACTGAGTCGAACGGGGCCGTCATAGACGAGCAGAGTCAGGTCAGCTTTATTCTGGAATCTCTTCCGAAGAGTTTCCTTCCATTCCGCAGCAATGTGGTTATGAATAAGCTGGAGTACACTCTTACCACGCTCTTAAACGAGCTGCAGACCTACCAGTCTCTTATGAAATGTAAGGGACAAGAAGGGGAGGCAAATGTTTCCACCTCAAAGAGGTTCAACAGAGGATCGTCCTATGGAACCAGGTATGCGCCCTATTCTTCTGGAAGTAAGACTTTTAAGAAGAAGAAGGATGCTGGTAAGGGGTCTAAACCTGACTCAGCTGCTGCTGCCCAGAAAGGCAAGGTCAAGGTTGCAGAGAAAGGAAAGTGTTTCCACTGCAACATGAACGGGCATTGGAAGCGCAACTGCCCAAAGTACTTGCCCGAAAAGAAGAAAGCCAACGAAGGTAAATATGATTTACTTGTATTGGAAACATGTTTAGTGGAGAATGATGACTCCGCCTGGATACTGGATTCAGGAGCCACTAATCACGTTTGTTCTTCATTTCAGGGAATTAGTTCCTGGAGGCAGCTTGACGTCGGAAAGATGACTCTCAAGGTCGGAACGGGAGATGTCATCTCAGTTGTAGCGGTAGTAATTAACGAGATTTCCGAAGAGGCTACAAACACGTCAACAAGAGTTGTTGATCAAACTGGCACTACAACAAGAGTTGTTGATGAAGCCAGCACATCGCGTCAGTCACATCCACCTCAAGTGTTGAGGGTGCCTCGACGTAGTGGGAGGATTGTGTCACAACCTGACCACTACGTGGGTTTAACTGAAACTCAAGTTGTCATACCTGATGACGGCGTCGAGGATCCATTGACCTACAAAAAGGCAATGGAAGATACTGACGAGGACAAATGGGTGAAAGCAATGGACTTGGAAATGGAGTCGATGTACTTCAATTCCGTTTGGGAACTTCACGATCCCGAGACCCAAGAGGATAGCGAGGAAGACATAGTAGTGGTGCTCGAGAGAAACTCGTTGAAGAAACGTTCTTCAAAGGCCTCTAAGTTGACAACTACCAAAGAGGAAGTTAATAAGATTTGTAGGATTTCTGAAAGAGGATCCCTCTCATTTGGATGTGCGTACTATCCAAGATCCTACAAAGATTCGAAACGAAGTGAATTCCTAAAATTAGTGCAAGGGGTGATGACCGTGGCAGAATATCATAAAAAATATATAAAACTCTCCAGGTATGCATCTACTGTTATCGATGATGAGATTGACAGGTGTAGAAAGTTCGAAGATGGGTTGCGAGAGGAGATTGGGAGTCGCATTACTGCATCCGGATGGCAAGAGTTTGGGCCTTTAGTAGAAGCAGCCGCCAGGGTTGAAAAAAGTGTGTTGGAAGGAAAGAAACAAAGAGAAGTATCGGAAAATGTGCAAGGTTCTTTTTCTAGCACTATGAGTTCTTCAGATAATAGAAAGTTTCGAAGCAACGATAGAGGTTTTGTACCAGGGACTGCGAGTGGTTCAGGTCAATTTAGAAGACCTAGTAAAAGTCAGCACACCTTGCAGGAACTGGAGTCTGCATTTAGTTACAACATATCCTATTCTTCATGTCAGAAGTGTGGAAAGTTACATAATGGCCAGTGTTTGTGGGGAACAAATATTTGCTATAATTGTGGTCAGGTAGGTCACATGAGCAGAGAATATCCACAGCAAGTACATGAAGATAGTGTTTCGCAAGGTGCTTCCTCAAGACCGGTTGTTCAAGGATGTCCTGATACACAGATAAAACCATTCACAATGGGTAGCAAAGAACAAATCAATACAAGGAGTTCTAGCGAAGCAAAATCGAAAGGGTGA

Coding sequence (CDS)

ATGTATACTTCTATTATTGCACTTTTAGCCGCGCAAAGACTTAATGGCGAAAATTACAAACAATGGAAGTCAAACCTAAACACTATTCTCGTGATAGATGATCTTAGGTTTGTCTTGCAAGAGGATTGTCCTCAAGCTCCTGCGCCTAACGCCACTGTGGCGGTGCGCAACGCCTATGACAGGTGGATCAAGGCCAATGACAAGGCCAAGGTCTACATCTTGGCGAGCATATCTGATGTGCTTGCCAAGAAGCACGAGGACATGGTCACCGCTAAGGAGATCATGGACTCGCTGCAGAGCATGTTTGGACAACCGTCCTCACAGGCTCGACATGAAGCCCTTAAGTTCATTTACAACTCCCGCATGAAGGAGGGCTCCTCAGTGCGAGAACACGTTCTCAACCTGATGGTCCACTTCAACGTGACTGAGTCGAACGGGGCCGTCATAGACGAGCAGAGTCAGGTCAGCTTTATTCTGGAATCTCTTCCGAAGAGTTTCCTTCCATTCCGCAGCAATGTGGTTATGAATAAGCTGGAGTACACTCTTACCACGCTCTTAAACGAGCTGCAGACCTACCAGTCTCTTATGAAATGTAAGGGACAAGAAGGGGAGGCAAATGTTTCCACCTCAAAGAGGTTCAACAGAGGATCGTCCTATGGAACCAGGTATGCGCCCTATTCTTCTGGAAGTAAGACTTTTAAGAAGAAGAAGGATGCTGGTAAGGGGTCTAAACCTGACTCAGCTGCTGCTGCCCAGAAAGGCAAGGTCAAGGTTGCAGAGAAAGGAAAGTGTTTCCACTGCAACATGAACGGGCATTGGAAGCGCAACTGCCCAAAGTACTTGCCCGAAAAGAAGAAAGCCAACGAAGGTAAATATGATTTACTTGTATTGGAAACATGTTTAGTGGAGAATGATGACTCCGCCTGGATACTGGATTCAGGAGCCACTAATCACGTTTGTTCTTCATTTCAGGGAATTAGTTCCTGGAGGCAGCTTGACGTCGGAAAGATGACTCTCAAGGTCGGAACGGGAGATGTCATCTCAGTTGTAGCGGTAGTAATTAACGAGATTTCCGAAGAGGCTACAAACACGTCAACAAGAGTTGTTGATCAAACTGGCACTACAACAAGAGTTGTTGATGAAGCCAGCACATCGCGTCAGTCACATCCACCTCAAGTGTTGAGGGTGCCTCGACGTAGTGGGAGGATTGTGTCACAACCTGACCACTACGTGGGTTTAACTGAAACTCAAGTTGTCATACCTGATGACGGCGTCGAGGATCCATTGACCTACAAAAAGGCAATGGAAGATACTGACGAGGACAAATGGGTGAAAGCAATGGACTTGGAAATGGAGTCGATGTACTTCAATTCCGTTTGGGAACTTCACGATCCCGAGACCCAAGAGGATAGCGAGGAAGACATAGTAGTGGTGCTCGAGAGAAACTCGTTGAAGAAACGTTCTTCAAAGGCCTCTAAGTTGACAACTACCAAAGAGGAAGTTAATAAGATTTGTAGGATTTCTGAAAGAGGATCCCTCTCATTTGGATGTGCGTACTATCCAAGATCCTACAAAGATTCGAAACGAAGTGAATTCCTAAAATTAGTGCAAGGGGTGATGACCGTGGCAGAATATCATAAAAAATATATAAAACTCTCCAGGTATGCATCTACTGTTATCGATGATGAGATTGACAGGTGTAGAAAGTTCGAAGATGGGTTGCGAGAGGAGATTGGGAGTCGCATTACTGCATCCGGATGGCAAGAGTTTGGGCCTTTAGTAGAAGCAGCCGCCAGGGTTGAAAAAAGTGTGTTGGAAGGAAAGAAACAAAGAGAAGTATCGGAAAATGTGCAAGGTTCTTTTTCTAGCACTATGAGTTCTTCAGATAATAGAAAGTTTCGAAGCAACGATAGAGGTTTTGTACCAGGGACTGCGAGTGGTTCAGGTCAATTTAGAAGACCTAGTAAAAGTCAGCACACCTTGCAGGAACTGGAGTCTGCATTTAGTTACAACATATCCTATTCTTCATGTCAGAAGTGTGGAAAGTTACATAATGGCCAGTGTTTGTGGGGAACAAATATTTGCTATAATTGTGGTCAGGTAGGTCACATGAGCAGAGAATATCCACAGCAAGTACATGAAGATAGTGTTTCGCAAGGTGCTTCCTCAAGACCGGTTGTTCAAGGATGTCCTGATACACAGATAAAACCATTCACAATGGGTAGCAAAGAACAAATCAATACAAGGAGTTCTAGCGAAGCAAAATCGAAAGGGTGA

Protein sequence

MYTSIIALLAAQRLNGENYKQWKSNLNTILVIDDLRFVLQEDCPQAPAPNATVAVRNAYDRWIKANDKAKVYILASISDVLAKKHEDMVTAKEIMDSLQSMFGQPSSQARHEALKFIYNSRMKEGSSVREHVLNLMVHFNVTESNGAVIDEQSQVSFILESLPKSFLPFRSNVVMNKLEYTLTTLLNELQTYQSLMKCKGQEGEANVSTSKRFNRGSSYGTRYAPYSSGSKTFKKKKDAGKGSKPDSAAAAQKGKVKVAEKGKCFHCNMNGHWKRNCPKYLPEKKKANEGKYDLLVLETCLVENDDSAWILDSGATNHVCSSFQGISSWRQLDVGKMTLKVGTGDVISVVAVVINEISEEATNTSTRVVDQTGTTTRVVDEASTSRQSHPPQVLRVPRRSGRIVSQPDHYVGLTETQVVIPDDGVEDPLTYKKAMEDTDEDKWVKAMDLEMESMYFNSVWELHDPETQEDSEEDIVVVLERNSLKKRSSKASKLTTTKEEVNKICRISERGSLSFGCAYYPRSYKDSKRSEFLKLVQGVMTVAEYHKKYIKLSRYASTVIDDEIDRCRKFEDGLREEIGSRITASGWQEFGPLVEAAARVEKSVLEGKKQREVSENVQGSFSSTMSSSDNRKFRSNDRGFVPGTASGSGQFRRPSKSQHTLQELESAFSYNISYSSCQKCGKLHNGQCLWGTNICYNCGQVGHMSREYPQQVHEDSVSQGASSRPVVQGCPDTQIKPFTMGSKEQINTRSSSEAKSKG

Homology

[Close]

BLAST of Moc03g03300 vs. NCBI nr
Match: TYK14550.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 500.0 bits (1286), Expect = 3.7e-137
Identity = 251/353 (71.10%), Postives = 298/353 (84.42%), Query Frame = 0


Query: 1   MYTSIIALLAAQRLNGENYKQWKSNLNTILVIDDLRFVLQEDCPQAPAPNATVAVRNAYD 60
           M ++ + +LAA +LNG NY  WK+ +NT+L+IDDLRFVL E+CPQ PA NAT  VR  Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  RWIKANDKAKVYILASISDVLAKKHEDMVTAKEIMDSLQSMFGQPSSQARHEALKFIYNS 120
           RW KAN+KA+ YILAS+S+VLAKKHE M+TA+EIMDSLQ MFGQ S Q +H+ALK+IYN+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 RMKEGSSVREHVLNLMVHFNVTESNGAVIDEQSQVSFILESLPKSFLPFRSNVVMNKLEY 180
           RM EG+SVREHVLN+MVHFNV E NGAVIDE SQVSFILESLP+SFL FRSN VMNK+ Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181 TLTTLLNELQTYQSLMKCKGQEGEANVSTS-KRFNRGSSYGTRYAPYSSGSKTFKKKKDA 240
           TLTTLLNELQT++SLMK KGQ+GEANV+TS ++F+RGS+ GT+  P SSG+K +KKKK  
Sbjct: 181 TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKK-G 240

Query: 241 GKGSKPDSAAAAQKGKVKVAEKGKCFHCNMNGHWKRNCPKYLPEKKKANEGKYDLLVLET 300
           G+G+K + AAA    K K A KG CFHCN  GHWKRNCPKYL EKKKA +GKYDLLVLET
Sbjct: 241 GQGNKANLAAAKTTKKTKAA-KGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLET 300

Query: 301 CLVENDDSAWILDSGATNHVCSSFQGISSWRQLDVGKMTLKVGTGDVISVVAV 353
           CLVENDDSAWI+DSGATNHVCSSFQGISSWRQL+ G+MT++VGTG V+S +AV
Sbjct: 301 CLVENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAIAV 351

[Close]

BLAST of Moc03g03300 vs. NCBI nr
Match: TYK14550.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 132.1 bits (331), Expect = 2.0e-26
Identity = 67/113 (59.29%), Postives = 87/113 (76.99%), Query Frame = 0


Query: 352 VVINEISEEATNTSTRVVDQTGTTTRVVDEASTSRQSHPPQVLRVPRRSGRIVSQPDHYV 411
           +V+NE+S+E T  STRVV++    TRVV   S++R +H PQ LR PRRSGR+ + P  Y+
Sbjct: 745 IVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTR-THQPQSLREPRRSGRVTNLPIRYM 804

Query: 412 GLTETQVVIPDDGVEDPLTYKKAMEDTDEDKWVKAMDLEMESMYFNSVWELHD 465
            LTET  VI D  +EDPLT+KKAMED D+D+W+KAM+LE+ESMYFNSVW+L D
Sbjct: 805 SLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMNLELESMYFNSVWDLVD 856

HSP 2 Score: 500.0 bits (1286), Expect = 3.7e-137
Identity = 251/353 (71.10%), Postives = 298/353 (84.42%), Query Frame = 0


Query: 1   MYTSIIALLAAQRLNGENYKQWKSNLNTILVIDDLRFVLQEDCPQAPAPNATVAVRNAYD 60
           M ++ + +LAA +LNG NY  WK+ +NT+L+IDDLRFVL E+CPQ PA NAT  VR  Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  RWIKANDKAKVYILASISDVLAKKHEDMVTAKEIMDSLQSMFGQPSSQARHEALKFIYNS 120
           RW KAN+KA+ YILAS+S+VLAKKHE M+TA+EIMDSLQ MFGQ S Q +H+ALK+IYN+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 RMKEGSSVREHVLNLMVHFNVTESNGAVIDEQSQVSFILESLPKSFLPFRSNVVMNKLEY 180
           RM EG+SVREHVLN+MVHFNV E NGAVIDE SQVSFILESLP+SFL FRSN VMNK+ Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181 TLTTLLNELQTYQSLMKCKGQEGEANVSTS-KRFNRGSSYGTRYAPYSSGSKTFKKKKDA 240
           TLTTLLNELQT++SLMK KGQ+GEANV+TS ++F+RGS+ GT+  P SSG+K +KKKK  
Sbjct: 181 TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKK-G 240

Query: 241 GKGSKPDSAAAAQKGKVKVAEKGKCFHCNMNGHWKRNCPKYLPEKKKANEGKYDLLVLET 300
           G+G+K + AAA    K K A KG CFHCN  GHWKRNCPKYL EKKKA +GKYDLLVLET
Sbjct: 241 GQGNKANLAAAKTTKKAKAA-KGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLET 300

Query: 301 CLVENDDSAWILDSGATNHVCSSFQGISSWRQLDVGKMTLKVGTGDVISVVAV 353
           CLVENDDSAWI+DSGATNHVCSSFQGISSWRQL+ G+MT++VGTG V+S +AV
Sbjct: 301 CLVENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAIAV 351

[Close]

BLAST of Moc03g03300 vs. NCBI nr
Match: KAA0054490.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 132.1 bits (331), Expect = 2.0e-26
Identity = 67/113 (59.29%), Postives = 87/113 (76.99%), Query Frame = 0


Query: 352 VVINEISEEATNTSTRVVDQTGTTTRVVDEASTSRQSHPPQVLRVPRRSGRIVSQPDHYV 411
           +V+NE+S+E T  STRVV++    TRVV   S++R +H PQ LR PRRSGR+ + P  Y+
Sbjct: 745 IVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTR-THQPQSLREPRRSGRVTNLPIRYM 804

Query: 412 GLTETQVVIPDDGVEDPLTYKKAMEDTDEDKWVKAMDLEMESMYFNSVWELHD 465
            LTET  VI D  +EDPLT+KKAMED D+D+W+KAM+LE+ESMYFNSVW+L D
Sbjct: 805 SLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMNLELESMYFNSVWDLVD 856

HSP 2 Score: 500.0 bits (1286), Expect = 3.7e-137
Identity = 251/353 (71.10%), Postives = 298/353 (84.42%), Query Frame = 0


Query: 1   MYTSIIALLAAQRLNGENYKQWKSNLNTILVIDDLRFVLQEDCPQAPAPNATVAVRNAYD 60
           M ++ + +LAA +LNG NY  WK+ +NT+L+IDDLRFVL E+CPQ PA NAT  VR  Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  RWIKANDKAKVYILASISDVLAKKHEDMVTAKEIMDSLQSMFGQPSSQARHEALKFIYNS 120
           RW KAN+KA+ YILAS+S+VLAKKHE M+TA+EIMDSLQ MFGQ S Q +H+ALK+IYN+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 RMKEGSSVREHVLNLMVHFNVTESNGAVIDEQSQVSFILESLPKSFLPFRSNVVMNKLEY 180
           RM EG+SVREHVLN+MVHFNV E NGAVIDE SQVSFILESLP+SFL FRSN VMNK+ Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181 TLTTLLNELQTYQSLMKCKGQEGEANVSTS-KRFNRGSSYGTRYAPYSSGSKTFKKKKDA 240
           TLTTLLNELQT++SLMK KGQ+GEANV+TS ++F+RGS+ GT+  P SSG+K +KKKK  
Sbjct: 181 TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKK-G 240

Query: 241 GKGSKPDSAAAAQKGKVKVAEKGKCFHCNMNGHWKRNCPKYLPEKKKANEGKYDLLVLET 300
           G+G+K + AAA    K K A KG CFHCN  GHWKRNCPKYL EKKKA +GKYDLLVLET
Sbjct: 241 GQGNKANLAAAKTTKKTKAA-KGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLET 300

Query: 301 CLVENDDSAWILDSGATNHVCSSFQGISSWRQLDVGKMTLKVGTGDVISVVAV 353
           CLVENDDSAWI+DSGATNHVCSSFQGISSWRQL+ G+MT++VGTG V+S +AV
Sbjct: 301 CLVENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAIAV 351

[Close]

BLAST of Moc03g03300 vs. NCBI nr
Match: KAA0035879.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0044276.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0051221.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0051893.1 gag/pol protein [Cucumis melo var. makuwa] >TYK00551.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 132.1 bits (331), Expect = 2.0e-26
Identity = 67/113 (59.29%), Postives = 87/113 (76.99%), Query Frame = 0


Query: 352 VVINEISEEATNTSTRVVDQTGTTTRVVDEASTSRQSHPPQVLRVPRRSGRIVSQPDHYV 411
           +V+NE+S+E T  STRVV++    TRVV   S++R +H PQ LR PRRSGR+ + P  Y+
Sbjct: 745 IVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTR-THQPQSLREPRRSGRVTNLPIRYM 804

Query: 412 GLTETQVVIPDDGVEDPLTYKKAMEDTDEDKWVKAMDLEMESMYFNSVWELHD 465
            LTET  VI D  +EDPLT+KKAMED D+D+W+KAM+LE+ESMYFNSVW+L D
Sbjct: 805 SLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMNLELESMYFNSVWDLVD 856

HSP 2 Score: 500.0 bits (1286), Expect = 3.7e-137
Identity = 251/353 (71.10%), Postives = 298/353 (84.42%), Query Frame = 0


Query: 1   MYTSIIALLAAQRLNGENYKQWKSNLNTILVIDDLRFVLQEDCPQAPAPNATVAVRNAYD 60
           M ++ + +LAA +LNG NY  WK+ +NT+L+IDDLRFVL E+CPQ PA NAT  VR  Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  RWIKANDKAKVYILASISDVLAKKHEDMVTAKEIMDSLQSMFGQPSSQARHEALKFIYNS 120
           RW KAN+KA+ YILAS+S+VLAKKHE M+TA+EIMDSLQ MFGQ S Q +H+ALK+IYN+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 RMKEGSSVREHVLNLMVHFNVTESNGAVIDEQSQVSFILESLPKSFLPFRSNVVMNKLEY 180
           RM EG+SVREHVLN+MVHFNV E NGAVIDE SQVSFILESLP+SFL FRSN VMNK+ Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181 TLTTLLNELQTYQSLMKCKGQEGEANVSTS-KRFNRGSSYGTRYAPYSSGSKTFKKKKDA 240
           TLTTLLNELQT++SLMK KGQ+GEANV+TS ++F+RGS+ GT+  P SSG+K +KKKK  
Sbjct: 181 TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKK-G 240

Query: 241 GKGSKPDSAAAAQKGKVKVAEKGKCFHCNMNGHWKRNCPKYLPEKKKANEGKYDLLVLET 300
           G+G+K + AAA    K K A KG CFHCN  GHWKRNCPKYL EKKKA +GKYDLLVLET
Sbjct: 241 GQGNKANLAAAKTTKKAKAA-KGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLET 300

Query: 301 CLVENDDSAWILDSGATNHVCSSFQGISSWRQLDVGKMTLKVGTGDVISVVAV 353
           CLVENDDSAWI+DSGATNHVCSSFQGISSWRQL+ G+MT++VGTG V+S +AV
Sbjct: 301 CLVENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAIAV 351

[Close]

BLAST of Moc03g03300 vs. NCBI nr
Match: KAA0047792.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 132.1 bits (331), Expect = 2.0e-26
Identity = 67/113 (59.29%), Postives = 87/113 (76.99%), Query Frame = 0


Query: 352 VVINEISEEATNTSTRVVDQTGTTTRVVDEASTSRQSHPPQVLRVPRRSGRIVSQPDHYV 411
           +V+NE+S+E T  STRVV++    TRVV   S++R +H PQ LR PRRSGR+ + P  Y+
Sbjct: 745 IVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTR-THQPQSLREPRRSGRVTNLPIRYM 804

Query: 412 GLTETQVVIPDDGVEDPLTYKKAMEDTDEDKWVKAMDLEMESMYFNSVWELHD 465
            LTET  VI D  +EDPLT+KKAMED D+D+W+KAM+LE+ESMYFNSVW+L D
Sbjct: 805 SLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMNLELESMYFNSVWDLVD 856

HSP 2 Score: 500.0 bits (1286), Expect = 3.7e-137
Identity = 251/353 (71.10%), Postives = 298/353 (84.42%), Query Frame = 0


Query: 1   MYTSIIALLAAQRLNGENYKQWKSNLNTILVIDDLRFVLQEDCPQAPAPNATVAVRNAYD 60
           M ++ + +LAA +LNG NY  WK+ +NT+L+IDDLRFVL E+CPQ PA NAT  VR  Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  RWIKANDKAKVYILASISDVLAKKHEDMVTAKEIMDSLQSMFGQPSSQARHEALKFIYNS 120
           RW KAN+KA+ YILAS+S+VLAKKHE M+TA+EIMDSLQ MFGQ S Q +H+ALK+IYN+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 RMKEGSSVREHVLNLMVHFNVTESNGAVIDEQSQVSFILESLPKSFLPFRSNVVMNKLEY 180
           RM EG+SVREHVLN+MVHFNV E NGAVIDE SQVSFILESLP+SFL FRSN VMNK+ Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181 TLTTLLNELQTYQSLMKCKGQEGEANVSTS-KRFNRGSSYGTRYAPYSSGSKTFKKKKDA 240
           TLTTLLNELQT++SLMK KGQ+GEANV+TS ++F+RGS+ GT+  P SSG+K +KKKK  
Sbjct: 181 TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKK-G 240

Query: 241 GKGSKPDSAAAAQKGKVKVAEKGKCFHCNMNGHWKRNCPKYLPEKKKANEGKYDLLVLET 300
           G+G+K + AAA    K K A KG CFHCN  GHWKRNCPKYL EKKKA +GKYDLLVLET
Sbjct: 241 GQGNKANLAAAKTTKKAKAA-KGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLET 300

Query: 301 CLVENDDSAWILDSGATNHVCSSFQGISSWRQLDVGKMTLKVGTGDVISVVAV 353
           CLVENDDSAWI+DSGATNHVCSSFQGISSWRQL+ G+MT++VGTG V+S +AV
Sbjct: 301 CLVENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAIAV 351

[Close]

BLAST of Moc03g03300 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 5.2e-09
Identity = 73/327 (22.32%), Postives = 133/327 (40.67%), Query Frame = 0


Query: 13  RLNGEN-YKQWKSNLNTILVIDDLRFVLQEDCPQAPAPNATVAVRNAYDRWIKANDKAKV 72
           + NG+N +  W+  +  +L+   L  VL  D  +     A        + W   +++A  
Sbjct: 10  KFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKA--------EDWADLDERAAS 69

Query: 73  YILASISDVLAKKHEDMVTAKEIMDSLQSMFGQPSSQARHEALKFIYNSRMKEGSSVREH 132
            I   +SD +     D  TA+ I   L+S++   +   +    K +Y   M EG++   H
Sbjct: 70  AIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSH 129

Query: 133 VLNLMVHFNVTESN-GAVIDEQSQVSFILESLPKSFLPFRSNVVMNKLEYTLTTLLNELQ 192
            LN+        +N G  I+E+ +   +L SLP S+    + ++  K    L  + + L 
Sbjct: 130 -LNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKTTIELKDVTSALL 189

Query: 193 TYQSLMKCKGQEGEANVSTSKRFNRGSSYGTRYAPYSSGSKTFKKKKDAGKGSKPDSAAA 252
             + + K    +G+A ++      RG SY              +   + G+      +  
Sbjct: 190 LNEKMRKKPENQGQALITE----GRGRSYQ-------------RSSNNYGRSGARGKSKN 249

Query: 253 AQKGKVKVAEKGKCFHCNMNGHWKRNCPKYLPEKKKANEG-------------KYDLLVL 312
             K +V+      C++CN  GH+KR+CP   P K K                   D +VL
Sbjct: 250 RSKSRVR-----NCYNCNQPGHFKRDCPN--PRKGKGETSGQKNDDNTAAMVQNNDNVVL 303

Query: 313 -----ETCL-VENDDSAWILDSGATNH 319
                E C+ +   +S W++D+ A++H
Sbjct: 310 FINEEEECMHLSGPESEWVVDTAASHH 303

[Close]

BLAST of Moc03g03300 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 5.7e-08
Identity = 82/376 (21.81%), Postives = 137/376 (36.44%), Query Frame = 0


Query: 13  RLNGENYKQWKSNLNTILVIDDLRFVLQEDCPQAPAPNATVAVRNA---YDRWIKANDKA 72
           +L   NY  W   ++ +    +L   L    P  PA   T AV      Y RW + +   
Sbjct: 25  KLTSTNYLMWSRQVHALFDGYELAGFLDGSTPMPPATIGTDAVPRVNPDYTRWRRQDKLI 84

Query: 73  KVYILASISDVLAKKHEDMVTAKEIMDSLQSMFGQPSSQARHEALKFIYNSRMKEGSSVR 132
              IL +IS  +        TA +I ++L+ ++  P S      L+FI            
Sbjct: 85  YSAILGAISMSVQPAVSRATTAAQIWETLRKIYANP-SYGHVTQLRFI------------ 144

Query: 133 EHVLNLMVHFNVTESNGAVIDEQSQVSFILESLPKSFLPFRSNVVMNKLEYTLT----TL 192
                    F+     G  +D   QV  +LE+LP  + P    +       +LT     L
Sbjct: 145 -------TRFDQLALLGKPMDHDEQVERVLENLPDDYKPVIDQIAAKDTPPSLTEIHERL 204

Query: 193 LNELQTYQSLMKCKGQEGEANVSTSKRFNRGSSYGTRYAPYSSGSKTFKKKKDAGKGSKP 252
           +N      +L   +     ANV T +  N   +   R       ++ +    +     +P
Sbjct: 205 INRESKLLALNSAEVVPITANVVTHRNTNTNRNQNNR-----GDNRNYNNNNNRSNSWQP 264

Query: 253 DSAAAAQKGKVKVAEKGKCFHCNMNGHWKRNCPKYLPEKKKAN-----------EGKYDL 312
            S+ +    +      G+C  C++ GH  + CP+    +   N           + + +L
Sbjct: 265 SSSGSRSDNRQPKPYLGRCQICSVQGHSAKRCPQLHQFQSTTNQQQSTSPFTPWQPRANL 324

Query: 313 LVLETCLVENDDSAWILDSGATNHVCSSFQGISSWRQLDVGKMTLKVGTGDVISVVAVVI 371
            V       N    W+LDSGAT+H+ S F  + S+ Q   G   + +  G  I      I
Sbjct: 325 AVNSPYNANN----WLLDSGATHHITSDFNNL-SFHQPYTGGDDVMIADGSTIP-----I 365

[Close]

BLAST of Moc03g03300 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.1e-06
Identity = 72/338 (21.30%), Postives = 132/338 (39.05%), Query Frame = 0


Query: 13  RLNGENYKQWKSNLNTILVIDDLRFVLQEDCPQAPAPNATVA---VRNAYDRWIKANDKA 72
           +L   NY  W   ++ +    +L   L       PA   T A   V   Y RW + +   
Sbjct: 25  KLTSTNYLMWSRQVHALFDGYELAGFLDGSTTMPPATIGTDAAPRVNPDYTRWKRQDKLI 84

Query: 73  KVYILASISDVLAKKHEDMVTAKEIMDSLQSMFGQPSSQARHEALKFIYNSRMKEGSSVR 132
              +L +IS  +        TA +I ++L+ ++  P S      L+       K   ++ 
Sbjct: 85  YSAVLGAISMSVQPAVSRATTAAQIWETLRKIYANP-SYGHVTQLRTQLKQWTKGTKTID 144

Query: 133 EHVLNLMVHFNVTESNGAVIDEQSQVSFILESLPKSFLPFRSNVVMNKLEYTLTTLLNEL 192
           +++  L+  F+     G  +D   QV  +LE+LP+ + P    +       TLT +   L
Sbjct: 145 DYMQGLVTRFDQLALLGKPMDHDEQVERVLENLPEEYKPVIDQIAAKDTPPTLTEIHERL 204

Query: 193 QTYQSLMKCKGQEGEANVSTSKRFNRGSSYGTRYAPYSSGSKTFK-KKKDAGKGSKPDSA 252
             ++S +          ++ +   +R +   T     ++G++  +   ++    SKP   
Sbjct: 205 LNHESKILAVSSATVIPITANAVSHRNT---TTTNNNNNGNRNNRYDNRNNNNNSKPWQQ 264

Query: 253 AAAQKGKVKVAEK---GKCFHCNMNGHWKRNCPK----------------YLPEKKKANE 312
           ++          K   GKC  C + GH  + C +                + P + +AN 
Sbjct: 265 SSTNFHPNNNQSKPYLGKCQICGVQGHSAKRCSQLQHFLSSVNSQQPPSPFTPWQPRAN- 324

Query: 313 GKYDLLVLETCLVENDDSAWILDSGATNHVCSSFQGIS 328
                L L +    N+   W+LDSGAT+H+ S F  +S
Sbjct: 325 -----LALGSPYSSNN---WLLDSGATHHITSDFNNLS 349

[Close]

BLAST of Moc03g03300 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 500.0 bits (1286), Expect = 1.8e-137
Identity = 251/353 (71.10%), Postives = 298/353 (84.42%), Query Frame = 0


Query: 1   MYTSIIALLAAQRLNGENYKQWKSNLNTILVIDDLRFVLQEDCPQAPAPNATVAVRNAYD 60
           M ++ + +LAA +LNG NY  WK+ +NT+L+IDDLRFVL E+CPQ PA NAT  VR  Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  RWIKANDKAKVYILASISDVLAKKHEDMVTAKEIMDSLQSMFGQPSSQARHEALKFIYNS 120
           RW KAN+KA+ YILAS+S+VLAKKHE M+TA+EIMDSLQ MFGQ S Q +H+ALK+IYN+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 RMKEGSSVREHVLNLMVHFNVTESNGAVIDEQSQVSFILESLPKSFLPFRSNVVMNKLEY 180
           RM EG+SVREHVLN+MVHFNV E NGAVIDE SQVSFILESLP+SFL FRSN VMNK+ Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181 TLTTLLNELQTYQSLMKCKGQEGEANVSTS-KRFNRGSSYGTRYAPYSSGSKTFKKKKDA 240
           TLTTLLNELQT++SLMK KGQ+GEANV+TS ++F+RGS+ GT+  P SSG+K +KKKK  
Sbjct: 181 TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKK-G 240

Query: 241 GKGSKPDSAAAAQKGKVKVAEKGKCFHCNMNGHWKRNCPKYLPEKKKANEGKYDLLVLET 300
           G+G+K + AAA    K K A KG CFHCN  GHWKRNCPKYL EKKKA +GKYDLLVLET
Sbjct: 241 GQGNKANLAAAKTTKKAKAA-KGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLET 300

Query: 301 CLVENDDSAWILDSGATNHVCSSFQGISSWRQLDVGKMTLKVGTGDVISVVAV 353
           CLVENDDSAWI+DSGATNHVCSSFQGISSWRQL+ G+MT++VGTG V+S +AV
Sbjct: 301 CLVENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAIAV 351

[Close]

BLAST of Moc03g03300 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 9.7e-27
Identity = 67/113 (59.29%), Postives = 87/113 (76.99%), Query Frame = 0


Query: 352 VVINEISEEATNTSTRVVDQTGTTTRVVDEASTSRQSHPPQVLRVPRRSGRIVSQPDHYV 411
           +V+NE+S+E T  STRVV++    TRVV   S++R +H PQ LR PRRSGR+ + P  Y+
Sbjct: 745 IVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTR-THQPQSLREPRRSGRVTNLPIRYM 804

Query: 412 GLTETQVVIPDDGVEDPLTYKKAMEDTDEDKWVKAMDLEMESMYFNSVWELHD 465
            LTET  VI D  +EDPLT+KKAMED D+D+W+KAM+LE+ESMYFNSVW+L D
Sbjct: 805 SLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMNLELESMYFNSVWDLVD 856

HSP 2 Score: 500.0 bits (1286), Expect = 1.8e-137
Identity = 251/353 (71.10%), Postives = 298/353 (84.42%), Query Frame = 0


Query: 1   MYTSIIALLAAQRLNGENYKQWKSNLNTILVIDDLRFVLQEDCPQAPAPNATVAVRNAYD 60
           M ++ + +LAA +LNG NY  WK+ +NT+L+IDDLRFVL E+CPQ PA NAT  VR  Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  RWIKANDKAKVYILASISDVLAKKHEDMVTAKEIMDSLQSMFGQPSSQARHEALKFIYNS 120
           RW KAN+KA+ YILAS+S+VLAKKHE M+TA+EIMDSLQ MFGQ S Q +H+ALK+IYN+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 RMKEGSSVREHVLNLMVHFNVTESNGAVIDEQSQVSFILESLPKSFLPFRSNVVMNKLEY 180
           RM EG+SVREHVLN+MVHFNV E NGAVIDE SQVSFILESLP+SFL FRSN VMNK+ Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181 TLTTLLNELQTYQSLMKCKGQEGEANVSTS-KRFNRGSSYGTRYAPYSSGSKTFKKKKDA 240
           TLTTLLNELQT++SLMK KGQ+GEANV+TS ++F+RGS+ GT+  P SSG+K +KKKK  
Sbjct: 181 TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKK-G 240

Query: 241 GKGSKPDSAAAAQKGKVKVAEKGKCFHCNMNGHWKRNCPKYLPEKKKANEGKYDLLVLET 300
           G+G+K + AAA    K K A KG CFHCN  GHWKRNCPKYL EKKKA +GKYDLLVLET
Sbjct: 241 GQGNKANLAAAKTTKKTKAA-KGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLET 300

Query: 301 CLVENDDSAWILDSGATNHVCSSFQGISSWRQLDVGKMTLKVGTGDVISVVAV 353
           CLVENDDSAWI+DSGATNHVCSSFQGISSWRQL+ G+MT++VGTG V+S +AV
Sbjct: 301 CLVENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAIAV 351

[Close]

BLAST of Moc03g03300 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 9.7e-27
Identity = 67/113 (59.29%), Postives = 87/113 (76.99%), Query Frame = 0


Query: 352 VVINEISEEATNTSTRVVDQTGTTTRVVDEASTSRQSHPPQVLRVPRRSGRIVSQPDHYV 411
           +V+NE+S+E T  STRVV++    TRVV   S++R +H PQ LR PRRSGR+ + P  Y+
Sbjct: 745 IVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTR-THQPQSLREPRRSGRVTNLPIRYM 804

Query: 412 GLTETQVVIPDDGVEDPLTYKKAMEDTDEDKWVKAMDLEMESMYFNSVWELHD 465
            LTET  VI D  +EDPLT+KKAMED D+D+W+KAM+LE+ESMYFNSVW+L D
Sbjct: 805 SLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMNLELESMYFNSVWDLVD 856

HSP 2 Score: 500.0 bits (1286), Expect = 1.8e-137
Identity = 251/353 (71.10%), Postives = 298/353 (84.42%), Query Frame = 0


Query: 1   MYTSIIALLAAQRLNGENYKQWKSNLNTILVIDDLRFVLQEDCPQAPAPNATVAVRNAYD 60
           M ++ + +LAA +LNG NY  WK+ +NT+L+IDDLRFVL E+CPQ PA NAT  VR  Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  RWIKANDKAKVYILASISDVLAKKHEDMVTAKEIMDSLQSMFGQPSSQARHEALKFIYNS 120
           RW KAN+KA+ YILAS+S+VLAKKHE M+TA+EIMDSLQ MFGQ S Q +H+ALK+IYN+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 RMKEGSSVREHVLNLMVHFNVTESNGAVIDEQSQVSFILESLPKSFLPFRSNVVMNKLEY 180
           RM EG+SVREHVLN+MVHFNV E NGAVIDE SQVSFILESLP+SFL FRSN VMNK+ Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181 TLTTLLNELQTYQSLMKCKGQEGEANVSTS-KRFNRGSSYGTRYAPYSSGSKTFKKKKDA 240
           TLTTLLNELQT++SLMK KGQ+GEANV+TS ++F+RGS+ GT+  P SSG+K +KKKK  
Sbjct: 181 TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKK-G 240

Query: 241 GKGSKPDSAAAAQKGKVKVAEKGKCFHCNMNGHWKRNCPKYLPEKKKANEGKYDLLVLET 300
           G+G+K + AAA    K K A KG CFHCN  GHWKRNCPKYL EKKKA +GKYDLLVLET
Sbjct: 241 GQGNKANLAAAKTTKKAKAA-KGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLET 300

Query: 301 CLVENDDSAWILDSGATNHVCSSFQGISSWRQLDVGKMTLKVGTGDVISVVAV 353
           CLVENDDSAWI+DSGATNHVCSSFQGISSWRQL+ G+MT++VGTG V+S +AV
Sbjct: 301 CLVENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAIAV 351

[Close]

BLAST of Moc03g03300 vs. ExPASy TrEMBL
Match: A0A5A7TWB9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00310 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 9.7e-27
Identity = 67/113 (59.29%), Postives = 87/113 (76.99%), Query Frame = 0


Query: 352 VVINEISEEATNTSTRVVDQTGTTTRVVDEASTSRQSHPPQVLRVPRRSGRIVSQPDHYV 411
           +V+NE+S+E T  STRVV++    TRVV   S++R +H PQ LR PRRSGR+ + P  Y+
Sbjct: 745 IVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTR-THQPQSLREPRRSGRVTNLPIRYM 804

Query: 412 GLTETQVVIPDDGVEDPLTYKKAMEDTDEDKWVKAMDLEMESMYFNSVWELHD 465
            LTET  VI D  +EDPLT+KKAMED D+D+W+KAM+LE+ESMYFNSVW+L D
Sbjct: 805 SLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMNLELESMYFNSVWDLVD 856

HSP 2 Score: 500.0 bits (1286), Expect = 1.8e-137
Identity = 251/353 (71.10%), Postives = 298/353 (84.42%), Query Frame = 0


Query: 1   MYTSIIALLAAQRLNGENYKQWKSNLNTILVIDDLRFVLQEDCPQAPAPNATVAVRNAYD 60
           M ++ + +LAA +LNG NY  WK+ +NT+L+IDDLRFVL E+CPQ PA NAT  VR  Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  RWIKANDKAKVYILASISDVLAKKHEDMVTAKEIMDSLQSMFGQPSSQARHEALKFIYNS 120
           RW KAN+KA+ YILAS+S+VLAKKHE M+TA+EIMDSLQ MFGQ S Q +H+ALK+IYN+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 RMKEGSSVREHVLNLMVHFNVTESNGAVIDEQSQVSFILESLPKSFLPFRSNVVMNKLEY 180
           RM EG+SVREHVLN+MVHFNV E NGAVIDE SQVSFILESLP+SFL FRSN VMNK+ Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181 TLTTLLNELQTYQSLMKCKGQEGEANVSTS-KRFNRGSSYGTRYAPYSSGSKTFKKKKDA 240
           TLTTLLNELQT++SLMK KGQ+GEANV+TS ++F+RGS+ GT+  P SSG+K +KKKK  
Sbjct: 181 TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKK-G 240

Query: 241 GKGSKPDSAAAAQKGKVKVAEKGKCFHCNMNGHWKRNCPKYLPEKKKANEGKYDLLVLET 300
           G+G+K + AAA    K K A KG CFHCN  GHWKRNCPKYL EKKKA +GKYDLLVLET
Sbjct: 241 GQGNKANLAAAKTTKKTKAA-KGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLET 300

Query: 301 CLVENDDSAWILDSGATNHVCSSFQGISSWRQLDVGKMTLKVGTGDVISVVAV 353
           CLVENDDSAWI+DSGATNHVCSSFQGISSWRQL+ G+MT++VGTG V+S +AV
Sbjct: 301 CLVENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAIAV 351

[Close]

BLAST of Moc03g03300 vs. ExPASy TrEMBL
Match: A0A5D3CSZ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G00320 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 9.7e-27
Identity = 67/113 (59.29%), Postives = 87/113 (76.99%), Query Frame = 0


Query: 352 VVINEISEEATNTSTRVVDQTGTTTRVVDEASTSRQSHPPQVLRVPRRSGRIVSQPDHYV 411
           +V+NE+S+E T  STRVV++    TRVV   S++R +H PQ LR PRRSGR+ + P  Y+
Sbjct: 745 IVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTR-THQPQSLREPRRSGRVTNLPIRYM 804

Query: 412 GLTETQVVIPDDGVEDPLTYKKAMEDTDEDKWVKAMDLEMESMYFNSVWELHD 465
            LTET  VI D  +EDPLT+KKAMED D+D+W+KAM+LE+ESMYFNSVW+L D
Sbjct: 805 SLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMNLELESMYFNSVWDLVD 856

HSP 2 Score: 500.0 bits (1286), Expect = 1.8e-137
Identity = 251/353 (71.10%), Postives = 298/353 (84.42%), Query Frame = 0


Query: 1   MYTSIIALLAAQRLNGENYKQWKSNLNTILVIDDLRFVLQEDCPQAPAPNATVAVRNAYD 60
           M ++ + +LAA +LNG NY  WK+ +NT+L+IDDLRFVL E+CPQ PA NAT  VR  Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  RWIKANDKAKVYILASISDVLAKKHEDMVTAKEIMDSLQSMFGQPSSQARHEALKFIYNS 120
           RW KAN+KA+ YILAS+S+VLAKKHE M+TA+EIMDSLQ MFGQ S Q +H+ALK+IYN+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 RMKEGSSVREHVLNLMVHFNVTESNGAVIDEQSQVSFILESLPKSFLPFRSNVVMNKLEY 180
           RM EG+SVREHVLN+MVHFNV E NGAVIDE SQVSFILESLP+SFL FRSN VMNK+ Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181 TLTTLLNELQTYQSLMKCKGQEGEANVSTS-KRFNRGSSYGTRYAPYSSGSKTFKKKKDA 240
           TLTTLLNELQT++SLMK KGQ+GEANV+TS ++F+RGS+ GT+  P SSG+K +KKKK  
Sbjct: 181 TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKK-G 240

Query: 241 GKGSKPDSAAAAQKGKVKVAEKGKCFHCNMNGHWKRNCPKYLPEKKKANEGKYDLLVLET 300
           G+G+K + AAA    K K A KG CFHCN  GHWKRNCPKYL EKKKA +GKYDLLVLET
Sbjct: 241 GQGNKANLAAAKTTKKAKAA-KGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLET 300

Query: 301 CLVENDDSAWILDSGATNHVCSSFQGISSWRQLDVGKMTLKVGTGDVISVVAV 353
           CLVENDDSAWI+DSGATNHVCSSFQGISSWRQL+ G+MT++VGTG V+S +AV
Sbjct: 301 CLVENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRVGTGHVVSAIAV 351

The following BLAST results are available for this feature:

BLAST of Moc03g03300 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK14550.1	3.7e-137	71.10	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK14550.1	2.0e-26	59.29	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0054490.1	2.0e-26	59.29	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0035879.1	2.0e-26	59.29	gag/pol protein [Cucumis melo var. makuwa] >KAA0044276.1 gag/pol protein [Cucumi...	[more]
KAA0047792.1	2.0e-26	59.29	gag/pol protein [Cucumis melo var. makuwa]	[more]

Pages

BLAST of Moc03g03300 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	5.2e-09	22.32	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	5.7e-08	21.81	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	1.1e-06	21.30	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]

BLAST of Moc03g03300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SMH8	1.8e-137	71.10	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]
A0A5A7SMH8	9.7e-27	59.29	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]
A0A5D3CPJ6	9.7e-27	59.29	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004...	[more]
A0A5A7TWB9	9.7e-27	59.29	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G0031...	[more]
A0A5D3CSZ6	9.7e-27	59.29	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G0032...	[more]

Pages

BLAST of Moc03g03300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 263..279 e-value: 0.015 score: 22.5 coord: 694..710 e-value: 0.0083 score: 24.1
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 262..279 e-value: 0.0035 score: 17.4 coord: 694..707 e-value: 1.4E-5 score: 24.9
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 263..279 score: 9.504374
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 695..710 score: 8.960441
None	No IPR available	GENE3D	4.10.60.10		coord: 229..294 e-value: 2.0E-6 score: 29.6
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 62..192 e-value: 2.4E-18 score: 66.2
None	No IPR available	GENE3D	4.10.60.10		coord: 690..715 e-value: 1.0E-5 score: 27.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 228..252
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 615..657
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 615..630
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 714..729
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 738..758
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 714..758
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 7..285
None	No IPR available	PANTHER	PTHR35317:SF16	ZINC FINGER, CCHC-TYPE-RELATED	coord: 7..285
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 255..284

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc03g03300.1	Moc03g03300.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding