Moc03g02540 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc03g02540
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Nuclear antigen LANA-1
Location	chr3: 1924166 .. 1924619 (+)
RNA-Seq Expression	Moc03g02540
Synteny	Moc03g02540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAATGGAAACCGAAAGTCGAGGTACAGGTGAAGATCGGAAGGAAGTCACTGGGCTGCGATGGGCTTGGTCCCGACCCGGGGCTCGGTCCCGTCCCGTGGCTCGGCCCCGACCCGGGGCTCGGTCCCGACCCGTGGCTCGGCCCCGACCCGGGGCTCGGTCCCGACCCGTGGCTCGGCCCCGACCCGGGGCTCGGTCCCGACCCGTGGCACGGCCCTCCAGCGGCCCTTCGTCTTCGATCCACGGTTTTGCCCAGGCCCGCCAACGAAATTAGGGTTAGCTACCTATGGAATGTTCTGGAACAACCTGGCGACTATAAGTAACGATCCAGCCTTAGAGGTAAGGGCATCTAAAACTAGCTACATTTCACATTATCCTCCGGCTAACTTAAGCATCGGAGCCCGTGTGACTAGTATCGCACCGGTTTAGCTCATCTGGTTTTGCAGGTACTAG

mRNA sequence

ATGCAATGGAAACCGAAAGTCGAGGTACAGGTGAAGATCGGAAGGAAGTCACTGGGCTGCGATGGGCTTGGTCCCGACCCGGGGCTCGGTCCCGTCCCGTGGCTCGGCCCCGACCCGGGGCTCGGTCCCGACCCGTGGCTCGGCCCCGACCCGGGGCTCGGTCCCGACCCGTGGCTCGGCCCCGACCCGGGGCTCGGTCCCGACCCGTGGCACGGCCCTCCAGCGGCCCTTCGTCTTCGATCCACGGTTTTGCCCAGGCCCGCCAACGAAATTAGGGTTAGCTACCTATGGAATGTTCTGGAACAACCTGGCGACTATAAGTACTAG

Coding sequence (CDS)

ATGCAATGGAAACCGAAAGTCGAGGTACAGGTGAAGATCGGAAGGAAGTCACTGGGCTGCGATGGGCTTGGTCCCGACCCGGGGCTCGGTCCCGTCCCGTGGCTCGGCCCCGACCCGGGGCTCGGTCCCGACCCGTGGCTCGGCCCCGACCCGGGGCTCGGTCCCGACCCGTGGCTCGGCCCCGACCCGGGGCTCGGTCCCGACCCGTGGCACGGCCCTCCAGCGGCCCTTCGTCTTCGATCCACGGTTTTGCCCAGGCCCGCCAACGAAATTAGGGTTAGCTACCTATGGAATGTTCTGGAACAACCTGGCGACTATAAGTACTAG

Protein sequence

MQWKPKVEVQVKIGRKSLGCDGLGPDPGLGPVPWLGPDPGLGPDPWLGPDPGLGPDPWLGPDPGLGPDPWHGPPAALRLRSTVLPRPANEIRVSYLWNVLEQPGDYKY

Homology

[Close]

BLAST of Moc03g02540 vs. NCBI nr
Match: GCC46945.1 (hypothetical protein [Chiloscyllium punctatum])

HSP 1 Score: 75.9 bits (185), Expect = 2.4e-10
Identity = 38/52 (73.08%), Postives = 42/52 (80.77%), Query Frame = 0


Query: 22 GLGPDPGLGPVPWLGPDPGLGPDPWLGPDPGLGPDPWLGPDPGLGPDPWHGP 74
          GLGPDPGLGP P +G DPG+G DP +G DPGLGPDP +G DPGLGPDP  GP
Sbjct: 35 GLGPDPGLGPDPGVGADPGVGADPGVGADPGLGPDPGVGADPGLGPDPGLGP 86

[Close]

BLAST of Moc03g02540 vs. NCBI nr
Match: XP_024137383.1 (protein SPT2 homolog [Oryzias melastigma])

HSP 1 Score: 73.6 bits (179), Expect = 1.2e-09
Identity = 35/66 (53.03%), Postives = 46/66 (69.70%), Query Frame = 0


Query: 22  GLGPDPGLGPVPWLGPDPGLGPDPWLGPDPGLGPDPWLGPDPGLGPDPWHGPPAALRLRS 81
           G+GP PG+GP P +GP PG+GP P +GP PG+GP P +GP PG+GP P  GP   +  R 
Sbjct: 526 GMGPRPGMGPRPGMGPRPGMGPQPGMGPRPGMGPRPGMGPGPGMGPRPGMGPRPGMGPRP 585

Query: 82  TVLPRP 88
            ++PRP
Sbjct: 586 GMVPRP 591

[Close]

BLAST of Moc03g02540 vs. NCBI nr
Match: XP_028990102.1 (specifically androgen-regulated gene protein [Betta splendens])

HSP 1 Score: 72.0 bits (175), Expect = 3.5e-09
Identity = 41/79 (51.90%), Postives = 46/79 (58.23%), Query Frame = 0


Query: 11  VKIGRKSLGCDGLGPDPGLGPVPWLGPDPGLGPDPWLGPDPGLGPDPWLGPDPGLGPDPW 70
           +K+ R   G   + P+P LGP P LGP P LGP P LGP P LGP P LGP P LGP P 
Sbjct: 232 LKVTRHMTGLLSVSPEPALGPAPALGPAPALGPAPALGPAPALGPAPALGPAPALGPKPA 291

Query: 71  HGPPAALRLRSTVLPRPAN 90
           HGP  AL       P PA+
Sbjct: 292 HGPALALGPAPAHGPEPAH 310

[Close]

BLAST of Moc03g02540 vs. NCBI nr
Match: YP_009118179.1 (nuclear antigen LANA-1 [Equid gammaherpesvirus 2] >AJF36130.1 nuclear antigen LANA-1 [Equid gammaherpesvirus 2])

HSP 1 Score: 71.6 bits (174), Expect = 4.6e-09
Identity = 38/52 (73.08%), Postives = 38/52 (73.08%), Query Frame = 0


Query: 22  GLGPDPGLGPVPWLGPDPGLGPDPWLGPDPGLGPDPWLGPDPGLGPDPWHGP 74
           G GPDPG GP P  GPDPG GPDP  GPDPG GPDP  GPDPG GPDP  GP
Sbjct: 185 GPGPDPGPGPDPGPGPDPGPGPDPGPGPDPGPGPDPGPGPDPGPGPDPGPGP 236

[Close]

BLAST of Moc03g02540 vs. NCBI nr
Match: AIU39518.1 (nuclear antigen LANA-1 [Equid gammaherpesvirus 2])

HSP 1 Score: 71.6 bits (174), Expect = 4.6e-09
Identity = 38/52 (73.08%), Postives = 38/52 (73.08%), Query Frame = 0


Query: 22  GLGPDPGLGPVPWLGPDPGLGPDPWLGPDPGLGPDPWLGPDPGLGPDPWHGP 74
           G GPDPG GP P  GPDPG GPDP  GPDPG GPDP  GPDPG GPDP  GP
Sbjct: 185 GPGPDPGPGPDPGPGPDPGPGPDPGPGPDPGPGPDPGPGPDPGPGPDPGPGP 236

[Close]

BLAST of Moc03g02540 vs. ExPASy Swiss-Prot
Match: P75330 (P30 adhesin OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129) OX=272634 GN=p30 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 4.9e-06
Identity = 29/83 (34.94%), Postives = 42/83 (50.60%), Query Frame = 0


Query: 5   PKVEVQVKIGRKSLGCDGLGPDPGLGPVPWLGPDPGLGPDPWLGPDPGLGPDPWLGPDPG 64
           P+ +VQ+  G ++    G  P PG+ P P + P PG+ P P   P PG+ P P + P PG
Sbjct: 159 PQPQVQINFGPRT----GFPPQPGMAPRPGMPPHPGMAPRPGFPPQPGMAPRPGMPPHPG 218

Query: 65  LGPDPWHGPPAALRLRSTVLPRP 88
           + P P   P   +  R  + P P
Sbjct: 219 MAPRPGFPPQPGMAPRPGMPPHP 237

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BLAST of Moc03g02540 vs. ExPASy TrEMBL
Match: A0A401TWB1 (Uncharacterized protein (Fragment) OS=Chiloscyllium punctatum OX=137246 GN=chiPu_0031249 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.2e-10
Identity = 38/52 (73.08%), Postives = 42/52 (80.77%), Query Frame = 0


Query: 22 GLGPDPGLGPVPWLGPDPGLGPDPWLGPDPGLGPDPWLGPDPGLGPDPWHGP 74
          GLGPDPGLGP P +G DPG+G DP +G DPGLGPDP +G DPGLGPDP  GP
Sbjct: 35 GLGPDPGLGPDPGVGADPGVGADPGVGADPGLGPDPGVGADPGLGPDPGLGP 86

[Close]

BLAST of Moc03g02540 vs. ExPASy TrEMBL
Match: A0A3B3CHD1 (Protein SPT2 homolog OS=Oryzias melastigma OX=30732 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 5.8e-10
Identity = 35/66 (53.03%), Postives = 46/66 (69.70%), Query Frame = 0


Query: 22  GLGPDPGLGPVPWLGPDPGLGPDPWLGPDPGLGPDPWLGPDPGLGPDPWHGPPAALRLRS 81
           G+GP PG+GP P +GP PG+GP P +GP PG+GP P +GP PG+GP P  GP   +  R 
Sbjct: 526 GMGPRPGMGPRPGMGPRPGMGPQPGMGPRPGMGPRPGMGPGPGMGPRPGMGPRPGMGPRP 585

Query: 82  TVLPRP 88
            ++PRP
Sbjct: 586 GMVPRP 591

[Close]

BLAST of Moc03g02540 vs. ExPASy TrEMBL
Match: A0A6P7L6I2 (ATP synthase membrane subunit f OS=Betta splendens OX=158456 GN=c19h17orf80 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.7e-09
Identity = 41/79 (51.90%), Postives = 46/79 (58.23%), Query Frame = 0


Query: 11  VKIGRKSLGCDGLGPDPGLGPVPWLGPDPGLGPDPWLGPDPGLGPDPWLGPDPGLGPDPW 70
           +K+ R   G   + P+P LGP P LGP P LGP P LGP P LGP P LGP P LGP P 
Sbjct: 232 LKVTRHMTGLLSVSPEPALGPAPALGPAPALGPAPALGPAPALGPAPALGPAPALGPKPA 291

Query: 71  HGPPAALRLRSTVLPRPAN 90
           HGP  AL       P PA+
Sbjct: 292 HGPALALGPAPAHGPEPAH 310

[Close]

BLAST of Moc03g02540 vs. ExPASy TrEMBL
Match: A0A0B4Q5L6 (Nuclear antigen LANA-1 OS=Equid gammaherpesvirus 2 OX=12657 GN=ORF73 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.2e-09
Identity = 38/52 (73.08%), Postives = 38/52 (73.08%), Query Frame = 0


Query: 22  GLGPDPGLGPVPWLGPDPGLGPDPWLGPDPGLGPDPWLGPDPGLGPDPWHGP 74
           G GPDPG GP P  GPDPG GPDP  GPDPG GPDP  GPDPG GPDP  GP
Sbjct: 185 GPGPDPGPGPDPGPGPDPGPGPDPGPGPDPGPGPDPGPGPDPGPGPDPGPGP 236

[Close]

BLAST of Moc03g02540 vs. ExPASy TrEMBL
Match: A0A0B5GR27 (Nuclear antigen LANA-1 OS=Equine herpesvirus 2 (strain 86/87) OX=82831 GN=ORF73 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.2e-09
Identity = 38/52 (73.08%), Postives = 38/52 (73.08%), Query Frame = 0


Query: 22  GLGPDPGLGPVPWLGPDPGLGPDPWLGPDPGLGPDPWLGPDPGLGPDPWHGP 74
           G GPDPG GP P  GPDPG GPDP  GPDPG GPDP  GPDPG GPDP  GP
Sbjct: 185 GPGPDPGPGPDPGPGPDPGPGPDPGPGPDPGPGPDPGPGPDPGPGPDPGPGP 236

The following BLAST results are available for this feature:

BLAST of Moc03g02540 vs. NCBI nr


Match Name	E-value	Identity	Description
GCC46945.1	2.4e-10	73.08	hypothetical protein [Chiloscyllium punctatum]	[more]
XP_024137383.1	1.2e-09	53.03	protein SPT2 homolog [Oryzias melastigma]	[more]
XP_028990102.1	3.5e-09	51.90	specifically androgen-regulated gene protein [Betta splendens]	[more]
YP_009118179.1	4.6e-09	73.08	nuclear antigen LANA-1 [Equid gammaherpesvirus 2] >AJF36130.1 nuclear antigen LA...	[more]
AIU39518.1	4.6e-09	73.08	nuclear antigen LANA-1 [Equid gammaherpesvirus 2]	[more]

BLAST of Moc03g02540 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P75330	4.9e-06	34.94	P30 adhesin OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129) OX=272634 GN=p30...	[more]

BLAST of Moc03g02540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A401TWB1	1.2e-10	73.08	Uncharacterized protein (Fragment) OS=Chiloscyllium punctatum OX=137246 GN=chiPu...	[more]
A0A3B3CHD1	5.8e-10	53.03	Protein SPT2 homolog OS=Oryzias melastigma OX=30732 PE=3 SV=1	[more]
A0A6P7L6I2	1.7e-09	51.90	ATP synthase membrane subunit f OS=Betta splendens OX=158456 GN=c19h17orf80 PE=3...	[more]
A0A0B4Q5L6	2.2e-09	73.08	Nuclear antigen LANA-1 OS=Equid gammaherpesvirus 2 OX=12657 GN=ORF73 PE=4 SV=1	[more]
A0A0B5GR27	2.2e-09	73.08	Nuclear antigen LANA-1 OS=Equine herpesvirus 2 (strain 86/87) OX=82831 GN=ORF73 ...	[more]

BLAST of Moc03g02540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..70
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc03g02540.1	Moc03g02540.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process
biological_process	GO:0006810	transport
cellular_component	GO:0031410	cytoplasmic vesicle
cellular_component	GO:0012505	endomembrane system
cellular_component	GO:0031090	organelle membrane
molecular_function	GO:0005488	binding