Moc03g02460 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc03g02460
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionATP-dependent DNA helicase-like protein RECG
Locationchr3: 1859338 .. 1861570 (-)
RNA-Seq ExpressionMoc03g02460
SyntenyMoc03g02460
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAAGTATAGAAACTGTCCAATCATGGGGAGAAATACTACAAAACGATTTTGCGAATCCTAGTTTTGAGTTACAGTTTTATACTAGAAGGAAATTCAATCAGAAGAACCAAGATCAAATAGTTACTCCTTCACAAAGCCAATCTGAGGCTCCGAGAAATGAAACTGAACTGTCTGATAATCCTCCCTCTTCAGCATTGTCTAGTAATCCCTCTTCTTCAAATTTTCAAAATAATTCACTTGTTGTCTCTGACCTTGATGTTCCCATAGCCATTAGAACAGGCGTTCGAAGTTGTACCAAATATCCTATTTCGAACTACATTTCATATGAAAAACTATCAAATAGTCATAAGGCCTTCACATCTAGAATAACTAATTTGTTTGTTCCAAGGAATATACATGAAGCTTTAGAAGATCCAAATTGGAAACTAACTGCCATGGAGGAGATGAATGCTCTAAAGCAAAACAGTACTTGGGAGATAGTAGAATTGCCAAAGGATAAGAAAGCAGTGGGATGTAATGGGTGTTTACCGTAAAATGTAATGCAGATGGTAGCATCGAGAGATACAAGGCTAGATTGGTAGCTAAAGGCTTCACACAAACCTACGGGATAGATTATCAGGAAACGTTTGCTCCTATTGCAAAAATTAACTCTATTAGAGTTCTTTTGTCCCTTGCAGTTAATTCAAATTGGTCTCTCCACCAGCTTGATGTGAAAAATGCTTTTTTCAATGGCAACCTTGAAGAAGAAGTTTTTATGGATTTGTCACCAGGTTTTGAAAAAGAACTCTGATGGAATAAAATCTGCAGATTAAAGAAATCTCTCTATGGCCTCAAACAGTCTGCTAGAGCTTGGTTCGAACGATTCAGAAAAGTCATATCGAGTTATGGATTTCTCCAGAGTCAAGCTTACCATACTATATTTTATAAACACTCTGAGAATAATAAAATCTCAATTCTGATTGTCTATGTAGATGATATTATTCTCACTGGTGATGATGAAGCAGGACTAGCTGGTCTTAAGAAAAATCTGGCAAGTGAGTTTCAAATCAAGGAATTGTGAACATTAAAATATTTTCTAGGAATGGAATTCGCAAGATCGAAGAAAGGTATATTCGTTAATCAAAGAAAATATGTTCTTGACTTACTTGGAGAAACAGTATTGCTTGGTTGCAGGATCGCAGAAACTTCTATTGAACCTAACTTGAAATTACAAACAGCAAACCCAGAAGAAATAAAGGATAGGGAACAATACCAGAGACTCGCAGGAAGATTAATTTATCTGTCACATATGCGACCAGATATTGCATTTGCTGTAAGTATGGTAAGTCAATTCATGTATGCACCTGAACCAACTCATTTTGAAGCTGTCTACAAACTCTTGAGATATTTGAAGGGAACTCCTGGAAAAGGTATTTTATTCGAAAAGAATAACCACTTCCAAATAGAAGTTTATACTGATGCAGATTGGGCTGGAAGTACTACCGATAGAAGATATACTTCTGGTTACTGTTCCTTTGTTGGAGGAAACCTAGTTACATGGAGGAGCAAAAAACAAAATGTAGTGGCCAAGAGTAGCGTTGAAGCAGAGTTTAGAGCATTGGCTCATGGAATTTGTGAAGGTATATGGATCAAAAGGATACTTGAAAAATTGAAGATTCCTCAGCCGACACCTATTCGGATTTATTGTGACTATAGTCTGCCATATCTATAGCTCATAACCCTGTGCTACATGATCGAACCAAACATATCGAGGTTGACAAACATTTTATAAAGAGAAGATTGATGCAGGTACAATATGTATCCCTTATCTTCCGACAACATAGCAAATTGCCGATGTTTTAACTAAGGGACTTCCAAAGAAACAATTCGACAATTTAATCAGCAAGCTAGATATGGATGACATCTTCAAACCAGCTTGAGGGGGAGTGTTAGATTTATCAATATTTGTGTAAATATTAGTTATCAATATTAGTTGTTAATATTTAGTCTTTATTGTTGATATTTAGTCTTTATGGTATTTATTACTTTCCTTGTTTGTAGTAGGTCATTCTTCAATATAAGAAGACCTAAGTTATATGTTTGAATATAGCAGTATTTTTTACTCTATCAAATTTACAGTATTTTTTTTCCATATGACAGCTTGCTGTTCTTTATGGCCTCCCACAAGGATTGTCATACGATAAGGAGAGTTCTAAACAGTTATCATTAGGTTTCGGGTCAAATGGTTAA

mRNA sequence

ATGCCAAGTATAGAAACTGTCCAATCATGGGGAGAAATACTACAAAACGATTTTGCGAATCCTAGTTTTGAGTTACAGTTTTATACTAGAAGGAAATTCAATCAGAAGAACCAAGATCAAATAGTTACTCCTTCACAAAGCCAATCTGAGGCTCCGAGAAATGAAACTGAACTGTCTGATAATCCTCCCTCTTCAGCATTGTCTAGTAATCCCTCTTCTTCAAATTTTCAAAATAATTCACTTGTTGTCTCTGACCTTGATGTTCCCATAGCCATTAGAACAGGCCTTGCTGTTCTTTATGGCCTCCCACAAGGATTGTCATACGATAAGGAGAGTTCTAAACAGTTATCATTAGGTTTCGGGTCAAATGGTTAA

Coding sequence (CDS)

ATGCCAAGTATAGAAACTGTCCAATCATGGGGAGAAATACTACAAAACGATTTTGCGAATCCTAGTTTTGAGTTACAGTTTTATACTAGAAGGAAATTCAATCAGAAGAACCAAGATCAAATAGTTACTCCTTCACAAAGCCAATCTGAGGCTCCGAGAAATGAAACTGAACTGTCTGATAATCCTCCCTCTTCAGCATTGTCTAGTAATCCCTCTTCTTCAAATTTTCAAAATAATTCACTTGTTGTCTCTGACCTTGATGTTCCCATAGCCATTAGAACAGGCCTTGCTGTTCTTTATGGCCTCCCACAAGGATTGTCATACGATAAGGAGAGTTCTAAACAGTTATCATTAGGTTTCGGGTCAAATGGTTAA

Protein sequence

MPSIETVQSWGEILQNDFANPSFELQFYTRRKFNQKNQDQIVTPSQSQSEAPRNETELSDNPPSSALSSNPSSSNFQNNSLVVSDLDVPIAIRTGLAVLYGLPQGLSYDKESSKQLSLGFGSNG
Homology
[Close]
BLAST of Moc03g02460 vs. NCBI nr
Match: TYK29009.1 (ATP-dependent DNA helicase-like protein RECG [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 2.8e-10
Identity = 52/116 (44.83%), Postives = 66/116 (56.90%), Query Frame = 0 

Query: 1   MPSIETVQSWGEILQNDFAN--PSFELQFYTRRKFNQKNQDQIVTPSQSQSEAPRNETEL 60
           +PS++   S  EILQND  +  P FE +FY RRKFNQ+NQDQ+ T SQ+Q EA  NE E 
Sbjct: 510 IPSVDNSHSGREILQNDHIDQVPEFEFKFYGRRKFNQRNQDQMDTSSQNQFEALGNEMEE 569

Query: 61  SDNPPSSALSSNPSSSNFQNNSLVVSDLDVPIAIRTGL--AVLYGLPQGLSYDKES 113
             NP   A  S  +  N   +  +V DLDVP AIR G+     Y +   +SY   S
Sbjct: 570 LGNP---ATISTSNLDNISESMSIVYDLDVPTAIREGVRNGTKYPIANYMSYQNLS 622

[Close]
BLAST of Moc03g02460 vs. NCBI nr
Match: XP_039014820.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC120144958 [Hibiscus syriacus])

HSP 1 Score: 65.5 bits (158), Expect = 3.8e-07
Identity = 45/115 (39.13%), Postives = 70/115 (60.87%), Query Frame = 0 

Query: 1   MPSIETVQSWGEILQNDFANPSFELQFYTRRKFNQKNQDQIVTPSQSQSEAPRNETELSD 60
           +P+    +S GE+LQ +  + + ELQFYTR++F+ +N+D  + P+Q+QSE   +  E S 
Sbjct: 503 VPNEGDSRSGGEVLQTNQRDLNSELQFYTRKRFHLRNKDSNINPAQNQSEDLSSGVETSG 562

Query: 61  NP-PSSALSSNPSSSNFQNNSLVVSDLDVPIAIRTGL--AVLYGLPQGLSYDKES 113
           NP P++ L     SS   NNS  + DLDVPIA+R G+     + + + LSY + S
Sbjct: 563 NPIPTTPL----ISSTLSNNSPSIPDLDVPIALRKGVRNCTQHPIAKYLSYHRLS 613

[Close]
BLAST of Moc03g02460 vs. NCBI nr
Match: KAE8701634.1 (hypothetical protein F3Y22_tig00110528pilonHSYRG00093 [Hibiscus syriacus])

HSP 1 Score: 55.1 bits (131), Expect = 5.1e-04
Identity = 41/115 (35.65%), Postives = 67/115 (58.26%), Query Frame = 0 

Query: 1   MPSIETVQSWGEILQNDFANPSFELQFYTRRKFNQKNQDQIVTPSQSQSEAPRNETELSD 60
           +P+    +S  E+LQ +  + + ELQFYTR++F+ +N+D  +  +++QSE   +  E   
Sbjct: 850 VPNEGDSRSGEEVLQTNQCDLNSELQFYTRKRFHLRNKDSNINYARNQSEDLSSGVETLG 909

Query: 61  NP-PSSALSSNPSSSNFQNNSLVVSDLDVPIAIRTGL--AVLYGLPQGLSYDKES 113
           NP P++ L     SS   NNS  + DLDVPIA+R G+     + + + LSY + S
Sbjct: 910 NPIPTTPL----ISSTLSNNSPSIPDLDVPIALRKGVRNCTQHPIAKYLSYHRLS 960

[Close]
BLAST of Moc03g02460 vs. ExPASy TrEMBL
Match: A0A5D3E016 (ATP-dependent DNA helicase-like protein RECG OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G001160 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.4e-10
Identity = 52/116 (44.83%), Postives = 66/116 (56.90%), Query Frame = 0 

Query: 1   MPSIETVQSWGEILQNDFAN--PSFELQFYTRRKFNQKNQDQIVTPSQSQSEAPRNETEL 60
           +PS++   S  EILQND  +  P FE +FY RRKFNQ+NQDQ+ T SQ+Q EA  NE E 
Sbjct: 510 IPSVDNSHSGREILQNDHIDQVPEFEFKFYGRRKFNQRNQDQMDTSSQNQFEALGNEMEE 569

Query: 61  SDNPPSSALSSNPSSSNFQNNSLVVSDLDVPIAIRTGL--AVLYGLPQGLSYDKES 113
             NP   A  S  +  N   +  +V DLDVP AIR G+     Y +   +SY   S
Sbjct: 570 LGNP---ATISTSNLDNISESMSIVYDLDVPTAIREGVRNGTKYPIANYMSYQNLS 622

[Close]
BLAST of Moc03g02460 vs. ExPASy TrEMBL
Match: A0A6A3AAZ5 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110528pilonHSYRG00093 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.5e-04
Identity = 41/115 (35.65%), Postives = 67/115 (58.26%), Query Frame = 0 

Query: 1   MPSIETVQSWGEILQNDFANPSFELQFYTRRKFNQKNQDQIVTPSQSQSEAPRNETELSD 60
           +P+    +S  E+LQ +  + + ELQFYTR++F+ +N+D  +  +++QSE   +  E   
Sbjct: 850 VPNEGDSRSGEEVLQTNQCDLNSELQFYTRKRFHLRNKDSNINYARNQSEDLSSGVETLG 909

Query: 61  NP-PSSALSSNPSSSNFQNNSLVVSDLDVPIAIRTGL--AVLYGLPQGLSYDKES 113
           NP P++ L     SS   NNS  + DLDVPIA+R G+     + + + LSY + S
Sbjct: 910 NPIPTTPL----ISSTLSNNSPSIPDLDVPIALRKGVRNCTQHPIAKYLSYHRLS 960

The following BLAST results are available for this feature:
BLAST of Moc03g02460 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK29009.12.8e-1044.83ATP-dependent DNA helicase-like protein RECG [Cucumis melo var. makuwa][more]
XP_039014820.13.8e-0739.13LOW QUALITY PROTEIN: uncharacterized protein LOC120144958 [Hibiscus syriacus][more]
KAE8701634.15.1e-0435.65hypothetical protein F3Y22_tig00110528pilonHSYRG00093 [Hibiscus syriacus][more]
BLAST of Moc03g02460 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc03g02460 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3E0161.4e-1044.83ATP-dependent DNA helicase-like protein RECG OS=Cucumis melo var. makuwa OX=1194... [more]
A0A6A3AAZ52.5e-0435.65Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110528pilon... [more]
BLAST of Moc03g02460 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..78

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc03g02460.1Moc03g02460.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0110165 cellular anatomical entity