Moc03g02330 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc03g02330
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	serine/arginine-rich splicing factor SR45a-like isoform X2
Location	chr3: 1750926 .. 1751987 (+)
RNA-Seq Expression	Moc03g02330
Synteny	Moc03g02330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTCTCAGACCAGGGTTGTATGCCCTGCATTTCTCTTTTTCTGGCAATTGAATCCTGTGTTATTTCTTTTCATTTTTTAGCATTATGTTTTTTAATTTGGACCCTGAACTGCGATTTCCTCCCCTGCCGGTAGCGGTAATCCTCCTTGGATAGTCAATTGAATTGTCTCATTCTTTTTATCTTTAATTTTCCAACAGGCACGGAGGCGGAGAGGAAGAACTCCAACTCCAGGGAGATATCTTGGACTTAGAACAGTTCGTGGTGAGCTTTCAATTGATTTTTGGTTTATCGCTGGGAAATATCTTGAAATTTCTCTGATCCTTTTCTTTTTTCTTATAGTGAGACGCAGATCACACAGCTACTCTCCTCGGCATTCCCCCAGTTACTCTCCTTATAGAAGGAGCTCGAGTCGCTCGTCTCGTTATTCATCTGAACGTAGCAGGAGCAGATCTCATTCTCCCTACCGCCATCGAAGATCATATGGTTCTCCATATCACCATAGATCGTACTCCCCTTATAGTCGGCGTAGATATGATTCTCCATATTATAGGTGCCATAGGTCATATTCTCGATCTGGATCTCGCTCTCCCTATTGTAGGTCACCTACCAGGCGACATGACAGGTCGTACTCATCTTACTACGACTATTATTCCCGTGATGATTGTTACTACAGAAGGCACAGATATCGGTCAGTTTCGAGGAGTGTTTCCCCAAAGGCAAGGATTTCTGGTAGGGGTTATTCCCGCAGTTATTCTCCCAGGCCTAGGAGAACTTTGAGGAGTTACTCCCGCAGCCCATCCTCTGTTAGGATTTACTCTCGCAGCCCATCCCTAGAACTGAGAAGTTATTCTCGTAGTGTTTCTCCTGAACGAAGCAAGAGATCAGGGAGCTATTTGGAAGGAAGGAGCTCAAGGAGTCGCTCTCGCTCTCGCTCTCGCAGCCATACCTTCAGACGACATAGCCACAAGGTTTATGAGAACTCAGGTAAGAGAGAGTATTCTGGGGGGAGTAGGTCACGAAGTCGAAGTGTGGTTTCAAGATCTGTTAGTCCTGCTTGA

mRNA sequence

ATGAAGTCTCAGACCAGGGCACGGAGGCGGAGAGGAAGAACTCCAACTCCAGGGAGATATCTTGGACTTAGAACAGTTCGTGTGAGACGCAGATCACACAGCTACTCTCCTCGGCATTCCCCCAGTTACTCTCCTTATAGAAGGAGCTCGAGTCGCTCGTCTCGTTATTCATCTGAACGTAGCAGGAGCAGATCTCATTCTCCCTACCGCCATCGAAGATCATATGGTTCTCCATATCACCATAGATCGTACTCCCCTTATAGTCGGCGTAGATATGATTCTCCATATTATAGGTGCCATAGGTCATATTCTCGATCTGGATCTCGCTCTCCCTATTGTAGGTCACCTACCAGGCGACATGACAGGTCGTACTCATCTTACTACGACTATTATTCCCGTGATGATTGTTACTACAGAAGGCACAGATATCGGTCAGTTTCGAGGAGTGTTTCCCCAAAGGCAAGGATTTCTGGTAGGGGTTATTCCCGCAGTTATTCTCCCAGGCCTAGGAGAACTTTGAGGAGTTACTCCCGCAGCCCATCCTCTGTTAGGATTTACTCTCGCAGCCCATCCCTAGAACTGAGAAGTTATTCTCGTAGTGTTTCTCCTGAACGAAGCAAGAGATCAGGGAGCTATTTGGAAGGAAGGAGCTCAAGGAGTCGCTCTCGCTCTCGCTCTCGCAGCCATACCTTCAGACGACATAGCCACAAGGTTTATGAGAACTCAGGTAAGAGAGAGTATTCTGGGGGGAGTAGGTCACGAAGTCGAAGTGTGGTTTCAAGATCTGTTAGTCCTGCTTGA

Coding sequence (CDS)

ATGAAGTCTCAGACCAGGGCACGGAGGCGGAGAGGAAGAACTCCAACTCCAGGGAGATATCTTGGACTTAGAACAGTTCGTGTGAGACGCAGATCACACAGCTACTCTCCTCGGCATTCCCCCAGTTACTCTCCTTATAGAAGGAGCTCGAGTCGCTCGTCTCGTTATTCATCTGAACGTAGCAGGAGCAGATCTCATTCTCCCTACCGCCATCGAAGATCATATGGTTCTCCATATCACCATAGATCGTACTCCCCTTATAGTCGGCGTAGATATGATTCTCCATATTATAGGTGCCATAGGTCATATTCTCGATCTGGATCTCGCTCTCCCTATTGTAGGTCACCTACCAGGCGACATGACAGGTCGTACTCATCTTACTACGACTATTATTCCCGTGATGATTGTTACTACAGAAGGCACAGATATCGGTCAGTTTCGAGGAGTGTTTCCCCAAAGGCAAGGATTTCTGGTAGGGGTTATTCCCGCAGTTATTCTCCCAGGCCTAGGAGAACTTTGAGGAGTTACTCCCGCAGCCCATCCTCTGTTAGGATTTACTCTCGCAGCCCATCCCTAGAACTGAGAAGTTATTCTCGTAGTGTTTCTCCTGAACGAAGCAAGAGATCAGGGAGCTATTTGGAAGGAAGGAGCTCAAGGAGTCGCTCTCGCTCTCGCTCTCGCAGCCATACCTTCAGACGACATAGCCACAAGGTTTATGAGAACTCAGGTAAGAGAGAGTATTCTGGGGGGAGTAGGTCACGAAGTCGAAGTGTGGTTTCAAGATCTGTTAGTCCTGCTTGA

Protein sequence

MKSQTRARRRRGRTPTPGRYLGLRTVRVRRRSHSYSPRHSPSYSPYRRSSSRSSRYSSERSRSRSHSPYRHRRSYGSPYHHRSYSPYSRRRYDSPYYRCHRSYSRSGSRSPYCRSPTRRHDRSYSSYYDYYSRDDCYYRRHRYRSVSRSVSPKARISGRGYSRSYSPRPRRTLRSYSRSPSSVRIYSRSPSLELRSYSRSVSPERSKRSGSYLEGRSSRSRSRSRSRSHTFRRHSHKVYENSGKREYSGGSRSRSRSVVSRSVSPA

Homology

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BLAST of Moc03g02330 vs. NCBI nr
Match: XP_022150941.1 (serine/arginine-rich splicing factor SR45a-like isoform X2 [Momordica charantia])

HSP 1 Score: 470.7 bits (1210), Expect = 8.4e-129
Identity = 259/261 (99.23%), Postives = 260/261 (99.62%), Query Frame = 0


Query: 6   RARRRRGRTPTPGRYLGLRTVRVRRRSHSYSPRHSPSYSPYRRSSSRSSRYSSERSRSRS 65
           +ARRRRGRTPTPGRYLGLRTVRVRRRSHSYSPRHSPSYSPYRRSSSRSSRYSSERSRSRS
Sbjct: 51  KARRRRGRTPTPGRYLGLRTVRVRRRSHSYSPRHSPSYSPYRRSSSRSSRYSSERSRSRS 110

Query: 66  HSPYRHRRSYGSPYHHRSYSPYSRRRYDSPYYRCHRSYSRSGSRSPYCRSPTRRHDRSYS 125
           HSPYRHRRSYGSPYHHRSYSPYSRRRYDSPYYRCHRSYSRSGSRSPYCRSPTRRHDRSYS
Sbjct: 111 HSPYRHRRSYGSPYHHRSYSPYSRRRYDSPYYRCHRSYSRSGSRSPYCRSPTRRHDRSYS 170

Query: 126 SYYDYYSRDDCYYRRHRYRSVSRSVSPKARISGRGYSRSYSPRPRRTLRSYSRSPSSVRI 185
           SYYDYYSRDDCYYRRHRYRSVSRSVSPKARISGRGYSRSYSPRPRRTLRSYSRSPSSVRI
Sbjct: 171 SYYDYYSRDDCYYRRHRYRSVSRSVSPKARISGRGYSRSYSPRPRRTLRSYSRSPSSVRI 230

Query: 186 YSRSPSLELRSYSRSVSPERSKRSGSYLEGRSSRSRSRSRSRSHTFRRHSHKVYENSGKR 245
           YSRSPSLELRSYSRSVSPERSKRSGSYLEGRSSRSRSRSRSRSHTFRRHSHKVYENSGKR
Sbjct: 231 YSRSPSLELRSYSRSVSPERSKRSGSYLEGRSSRSRSRSRSRSHTFRRHSHKVYENSGKR 290

Query: 246 EYSGGSRSRSRSVVSRSVSPA 267
           EYSG SRSRSRSVVSRSVSPA
Sbjct: 291 EYSGXSRSRSRSVVSRSVSPA 311

[Close]

BLAST of Moc03g02330 vs. NCBI nr
Match: XP_022150940.1 (serine/arginine-rich splicing factor SR45a-like isoform X1 [Momordica charantia])

HSP 1 Score: 470.7 bits (1210), Expect = 8.4e-129
Identity = 259/261 (99.23%), Postives = 260/261 (99.62%), Query Frame = 0


Query: 6   RARRRRGRTPTPGRYLGLRTVRVRRRSHSYSPRHSPSYSPYRRSSSRSSRYSSERSRSRS 65
           +ARRRRGRTPTPGRYLGLRTVRVRRRSHSYSPRHSPSYSPYRRSSSRSSRYSSERSRSRS
Sbjct: 118 KARRRRGRTPTPGRYLGLRTVRVRRRSHSYSPRHSPSYSPYRRSSSRSSRYSSERSRSRS 177

Query: 66  HSPYRHRRSYGSPYHHRSYSPYSRRRYDSPYYRCHRSYSRSGSRSPYCRSPTRRHDRSYS 125
           HSPYRHRRSYGSPYHHRSYSPYSRRRYDSPYYRCHRSYSRSGSRSPYCRSPTRRHDRSYS
Sbjct: 178 HSPYRHRRSYGSPYHHRSYSPYSRRRYDSPYYRCHRSYSRSGSRSPYCRSPTRRHDRSYS 237

Query: 126 SYYDYYSRDDCYYRRHRYRSVSRSVSPKARISGRGYSRSYSPRPRRTLRSYSRSPSSVRI 185
           SYYDYYSRDDCYYRRHRYRSVSRSVSPKARISGRGYSRSYSPRPRRTLRSYSRSPSSVRI
Sbjct: 238 SYYDYYSRDDCYYRRHRYRSVSRSVSPKARISGRGYSRSYSPRPRRTLRSYSRSPSSVRI 297

Query: 186 YSRSPSLELRSYSRSVSPERSKRSGSYLEGRSSRSRSRSRSRSHTFRRHSHKVYENSGKR 245
           YSRSPSLELRSYSRSVSPERSKRSGSYLEGRSSRSRSRSRSRSHTFRRHSHKVYENSGKR
Sbjct: 298 YSRSPSLELRSYSRSVSPERSKRSGSYLEGRSSRSRSRSRSRSHTFRRHSHKVYENSGKR 357

Query: 246 EYSGGSRSRSRSVVSRSVSPA 267
           EYSG SRSRSRSVVSRSVSPA
Sbjct: 358 EYSGXSRSRSRSVVSRSVSPA 378

[Close]

BLAST of Moc03g02330 vs. NCBI nr
Match: XP_038894517.1 (serine/arginine-rich splicing factor SR45a isoform X1 [Benincasa hispida])

HSP 1 Score: 248.4 bits (633), Expect = 6.7e-62
Identity = 188/266 (70.68%), Postives = 201/266 (75.56%), Query Frame = 0


Query: 6   RARRRRGRTPTPGRYLGLRTVRVRRRSHSYSPRHSPSYSPYRRSSSRSSRYSSERSRSRS 65
           +ARRRRGRTPTPGRYLGLRTV VRRRS SYS R SPSYSPYRRSSSRS+ YSS RSRSRS
Sbjct: 117 KARRRRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSSSRSTDYSSNRSRSRS 176

Query: 66  HSPYRHRRSYGSPYHHRSYSPYSRRRYDSPYYRCHRSYSRSGSRSPYCRSPTRRHDRSYS 125
           HS  RHRRSYGS Y++RSYS YSRRRYDSP  R H+SYSR  SRSPY R   R  DRSYS
Sbjct: 177 HSVDRHRRSYGSSYNYRSYS-YSRRRYDSPDCRRHKSYSR--SRSPYRR---RHRDRSYS 236

Query: 126 SYYDYYSRDDCYYRRHRYRSVSRSVSPKARISGRGYSRSYSPRP-RRTLRSYSRSPSSVR 185
            Y DY    D YYRRHRYRSVSRS+SPKARIS R YSRSYSP P RRTLR         R
Sbjct: 237 PYDDY--SPDPYYRRHRYRSVSRSLSPKARISSRHYSRSYSPEPRRRTLR---------R 296

Query: 186 IYSRSPSLE-LRSYSRSVSPERSKRS-GSYLEGRS-SRSR-SRSRSRSHTFRRHSHKVYE 245
            YSRS S E  RSYSRS+SPERS+RS  SY    S  RSR SRSRSRS+T RRHS+K+YE
Sbjct: 297 SYSRSLSWESRRSYSRSISPERSRRSWSSYSYSVSPERSRSSRSRSRSNTSRRHSYKLYE 356

Query: 246 NSGKREYSGGSRSRSRSVVSRSVSPA 267
           +  +      SRSRSRSV SRSVSPA
Sbjct: 357 SRRR------SRSRSRSVTSRSVSPA 359

[Close]

BLAST of Moc03g02330 vs. NCBI nr
Match: XP_008457405.1 (PREDICTED: serine/arginine-rich splicing factor SR45a-like [Cucumis melo])

HSP 1 Score: 246.5 bits (628), Expect = 2.6e-61
Identity = 187/275 (68.00%), Postives = 200/275 (72.73%), Query Frame = 0


Query: 6   RARRRRGRTPTPGRYLGLRTVRVRRRSHSYSPRHSPSYSPYRRSSSRSSRYSSERSRSRS 65
           +ARRRRGRTPTPGRYLGLRTV VRRRS SYS R SPSYSPYRRSSSRS+ YSS+RSRSRS
Sbjct: 117 KARRRRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSSSRSTHYSSDRSRSRS 176

Query: 66  HSPYRHRRSYGSPYHHRSY--------SPYSRRRYDSP-YYRCHRSYSRSGSRSPYCRSP 125
            S  RHRRSYGSPYH RSY        SPY RRRYDSP YYR HRSYSRS   SPY R  
Sbjct: 177 RSINRHRRSYGSPYHRRSYSYSRRRYDSPYYRRRYDSPDYYRHHRSYSRSS--SPYRR-- 236

Query: 126 TRRHDRSYSSYYDYYSRDDCYYRRHRYRSVSRSVSPKARISGRGYSRSYSPRP-RRTLRS 185
               DRSYS  YDYYS D  YYRRHRYRSVSRS+SPK+R +GR YSRSYSP P RRTLR+
Sbjct: 237 -WSRDRSYSP-YDYYSPDP-YYRRHRYRSVSRSLSPKSR-NGRHYSRSYSPEPRRRTLRN 296

Query: 186 YSRSPSSVRIYSRSPSLELRSYSRSVSPERSKRSGSYLEGRS---SRSRS-RSRSRSHTF 245
           YS SPS             RSYSRS+SPERS+RSGS +   S    R RS RSRS SHT 
Sbjct: 297 YSHSPSRE---------SRRSYSRSISPERSRRSGSSVYSSSISPERGRSLRSRSCSHTP 356

Query: 246 RRHSHKVYENSGKREYSGGSRSRSRSVVSRSVSPA 267
           RRH     E++ KR YS  SRSRS+SV SRSVSPA
Sbjct: 357 RRH-----ESTRKRGYSSRSRSRSQSVTSRSVSPA 369

[Close]

BLAST of Moc03g02330 vs. NCBI nr
Match: KAG6607292.1 (Serine/arginine-rich splicing factor SR45a, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 243.0 bits (619), Expect = 2.8e-60
Identity = 178/263 (67.68%), Postives = 187/263 (71.10%), Query Frame = 0


Query: 6   RARRRRGRTPTPGRYLGLRTVRVRRRSHSYSPRHSPSYSPYRRSSSRSSRYSSERSRSRS 65
           +ARRRRGRTPTPGRY GLRTVRVRRRS SYS R SPSYSPY RS S SS YSS+RSRSRS
Sbjct: 149 KARRRRGRTPTPGRYFGLRTVRVRRRSRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRS 208

Query: 66  HSPYRHRRSYGSPYHHRSYSPYSRRRYDSPYYRCHRSYSRSGSRSPYCRSPTRRHDRSYS 125
           HSP R RRS  SPYH+RSYSPYS RRYDSPYYR HRSYSR  S SP  R PTRRHDRSYS
Sbjct: 209 HSPNRRRRSNDSPYHYRSYSPYSGRRYDSPYYRRHRSYSR--SHSPCSRLPTRRHDRSYS 268

Query: 126 SYYDYYSRDDCYYRRHRYRSVSRSVSPKARISGRGYSRSYSPRPRRTL-RSYSRSPSSVR 185
             YDY S D  YYRRHR RSVSRSVSPKAR+S R YSRSYSPR RR+  RSYSRS     
Sbjct: 269 P-YDYCSPDP-YYRRHRDRSVSRSVSPKARVSSRRYSRSYSPRHRRSASRSYSRS----- 328

Query: 186 IYSRSPSLELRSYSRSVSPERSKRSGSYLEGRS-SRSRSRSRSRSHTFRRHSHKVYENSG 245
                     RSYSRS+SPERS+R  S+    S  R  SRSRSRSHT R H         
Sbjct: 329 ----------RSYSRSLSPERSRRFRSHSHSISPERRSSRSRSRSHTPRHHK-------- 380

Query: 246 KREYSGGSRSRSRSVVSRSVSPA 267
           +  YSGG    S SV SRSVSPA
Sbjct: 389 RGGYSGG----SGSVASRSVSPA 380

[Close]

BLAST of Moc03g02330 vs. ExPASy Swiss-Prot
Match: Q84TH4 (Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana OX=3702 GN=SR45A PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.4e-17
Identity = 124/278 (44.60%), Postives = 138/278 (49.64%), Query Frame = 0


Query: 6   RARRRRGRTPTPGRYLGLRTVRVRRRSHSYSPRHSPSYSPYRRSSSRSSRYSSERSRSRS 65
           +ARRRRGRTPTPG+YLGLRT R R +S SYSPR S S      S SRS  YSS+  R RS
Sbjct: 150 KARRRRGRTPTPGKYLGLRTARGRHKSPSYSPRRSVSC-----SRSRSRSYSSD--RGRS 209

Query: 66  HSPYRHRRSYGSPYHHRSYSPYSRRRYDSPYYRCHRSYSRSGSRSPYCRSPTRRHDRSYS 125
           +SP     SYG      SYSP+ RRR         R YS S S SP  R   RR DRSYS
Sbjct: 210 YSP-----SYGRRGRSSSYSPFYRRR---------RFYSPSRSPSPDDRY-NRRRDRSYS 269

Query: 126 SYY-----------DYYSRDDCYYRRHRYRSVSRSVSPKARISG-------RGYSRSYSP 185
            YY           +  +RD   Y   RYRS SRS SP+ R          RG  RSYSP
Sbjct: 270 PYYRRRDRSRSYSRNCRARDRSPYYMRRYRSRSRSYSPRYRARDRSCSPYYRGRDRSYSP 329

Query: 186 RPRRTLRSYSRSPSSVRIYSRSPSLELRSYSRSVSPERSKRSGSYLEGRSSRSRSRSRSR 245
             +   RSY  SP S R Y R      RS S SVSP     S S +  R  R  SRS+SR
Sbjct: 330 HYQGRDRSY--SPES-RYYRRH-----RSVSGSVSPGGRSMSRS-ISPRKGRKESRSKSR 382

Query: 246 SHTFRRHSHKVYENSGKREYSGGSRSRSRSVVSRSVSP 266
            H   R S   +  S            +RS  SRSVSP
Sbjct: 390 RHD--RQSSMCHSRS------------ARSSTSRSVSP 382

[Close]

BLAST of Moc03g02330 vs. ExPASy TrEMBL
Match: A0A6J1D9V3 (serine/arginine-rich splicing factor SR45a-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111018970 PE=4 SV=1)

HSP 1 Score: 470.7 bits (1210), Expect = 4.0e-129
Identity = 259/261 (99.23%), Postives = 260/261 (99.62%), Query Frame = 0


Query: 6   RARRRRGRTPTPGRYLGLRTVRVRRRSHSYSPRHSPSYSPYRRSSSRSSRYSSERSRSRS 65
           +ARRRRGRTPTPGRYLGLRTVRVRRRSHSYSPRHSPSYSPYRRSSSRSSRYSSERSRSRS
Sbjct: 118 KARRRRGRTPTPGRYLGLRTVRVRRRSHSYSPRHSPSYSPYRRSSSRSSRYSSERSRSRS 177

Query: 66  HSPYRHRRSYGSPYHHRSYSPYSRRRYDSPYYRCHRSYSRSGSRSPYCRSPTRRHDRSYS 125
           HSPYRHRRSYGSPYHHRSYSPYSRRRYDSPYYRCHRSYSRSGSRSPYCRSPTRRHDRSYS
Sbjct: 178 HSPYRHRRSYGSPYHHRSYSPYSRRRYDSPYYRCHRSYSRSGSRSPYCRSPTRRHDRSYS 237

Query: 126 SYYDYYSRDDCYYRRHRYRSVSRSVSPKARISGRGYSRSYSPRPRRTLRSYSRSPSSVRI 185
           SYYDYYSRDDCYYRRHRYRSVSRSVSPKARISGRGYSRSYSPRPRRTLRSYSRSPSSVRI
Sbjct: 238 SYYDYYSRDDCYYRRHRYRSVSRSVSPKARISGRGYSRSYSPRPRRTLRSYSRSPSSVRI 297

Query: 186 YSRSPSLELRSYSRSVSPERSKRSGSYLEGRSSRSRSRSRSRSHTFRRHSHKVYENSGKR 245
           YSRSPSLELRSYSRSVSPERSKRSGSYLEGRSSRSRSRSRSRSHTFRRHSHKVYENSGKR
Sbjct: 298 YSRSPSLELRSYSRSVSPERSKRSGSYLEGRSSRSRSRSRSRSHTFRRHSHKVYENSGKR 357

Query: 246 EYSGGSRSRSRSVVSRSVSPA 267
           EYSG SRSRSRSVVSRSVSPA
Sbjct: 358 EYSGXSRSRSRSVVSRSVSPA 378

[Close]

BLAST of Moc03g02330 vs. ExPASy TrEMBL
Match: A0A6J1DD22 (serine/arginine-rich splicing factor SR45a-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111018970 PE=4 SV=1)

HSP 1 Score: 470.7 bits (1210), Expect = 4.0e-129
Identity = 259/261 (99.23%), Postives = 260/261 (99.62%), Query Frame = 0


Query: 6   RARRRRGRTPTPGRYLGLRTVRVRRRSHSYSPRHSPSYSPYRRSSSRSSRYSSERSRSRS 65
           +ARRRRGRTPTPGRYLGLRTVRVRRRSHSYSPRHSPSYSPYRRSSSRSSRYSSERSRSRS
Sbjct: 51  KARRRRGRTPTPGRYLGLRTVRVRRRSHSYSPRHSPSYSPYRRSSSRSSRYSSERSRSRS 110

Query: 66  HSPYRHRRSYGSPYHHRSYSPYSRRRYDSPYYRCHRSYSRSGSRSPYCRSPTRRHDRSYS 125
           HSPYRHRRSYGSPYHHRSYSPYSRRRYDSPYYRCHRSYSRSGSRSPYCRSPTRRHDRSYS
Sbjct: 111 HSPYRHRRSYGSPYHHRSYSPYSRRRYDSPYYRCHRSYSRSGSRSPYCRSPTRRHDRSYS 170

Query: 126 SYYDYYSRDDCYYRRHRYRSVSRSVSPKARISGRGYSRSYSPRPRRTLRSYSRSPSSVRI 185
           SYYDYYSRDDCYYRRHRYRSVSRSVSPKARISGRGYSRSYSPRPRRTLRSYSRSPSSVRI
Sbjct: 171 SYYDYYSRDDCYYRRHRYRSVSRSVSPKARISGRGYSRSYSPRPRRTLRSYSRSPSSVRI 230

Query: 186 YSRSPSLELRSYSRSVSPERSKRSGSYLEGRSSRSRSRSRSRSHTFRRHSHKVYENSGKR 245
           YSRSPSLELRSYSRSVSPERSKRSGSYLEGRSSRSRSRSRSRSHTFRRHSHKVYENSGKR
Sbjct: 231 YSRSPSLELRSYSRSVSPERSKRSGSYLEGRSSRSRSRSRSRSHTFRRHSHKVYENSGKR 290

Query: 246 EYSGGSRSRSRSVVSRSVSPA 267
           EYSG SRSRSRSVVSRSVSPA
Sbjct: 291 EYSGXSRSRSRSVVSRSVSPA 311

[Close]

BLAST of Moc03g02330 vs. ExPASy TrEMBL
Match: A0A1S3C508 (serine/arginine-rich splicing factor SR45a-like OS=Cucumis melo OX=3656 GN=LOC103497100 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 1.2e-61
Identity = 187/275 (68.00%), Postives = 200/275 (72.73%), Query Frame = 0


Query: 6   RARRRRGRTPTPGRYLGLRTVRVRRRSHSYSPRHSPSYSPYRRSSSRSSRYSSERSRSRS 65
           +ARRRRGRTPTPGRYLGLRTV VRRRS SYS R SPSYSPYRRSSSRS+ YSS+RSRSRS
Sbjct: 117 KARRRRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSSSRSTHYSSDRSRSRS 176

Query: 66  HSPYRHRRSYGSPYHHRSY--------SPYSRRRYDSP-YYRCHRSYSRSGSRSPYCRSP 125
            S  RHRRSYGSPYH RSY        SPY RRRYDSP YYR HRSYSRS   SPY R  
Sbjct: 177 RSINRHRRSYGSPYHRRSYSYSRRRYDSPYYRRRYDSPDYYRHHRSYSRSS--SPYRR-- 236

Query: 126 TRRHDRSYSSYYDYYSRDDCYYRRHRYRSVSRSVSPKARISGRGYSRSYSPRP-RRTLRS 185
               DRSYS  YDYYS D  YYRRHRYRSVSRS+SPK+R +GR YSRSYSP P RRTLR+
Sbjct: 237 -WSRDRSYSP-YDYYSPDP-YYRRHRYRSVSRSLSPKSR-NGRHYSRSYSPEPRRRTLRN 296

Query: 186 YSRSPSSVRIYSRSPSLELRSYSRSVSPERSKRSGSYLEGRS---SRSRS-RSRSRSHTF 245
           YS SPS             RSYSRS+SPERS+RSGS +   S    R RS RSRS SHT 
Sbjct: 297 YSHSPSRE---------SRRSYSRSISPERSRRSGSSVYSSSISPERGRSLRSRSCSHTP 356

Query: 246 RRHSHKVYENSGKREYSGGSRSRSRSVVSRSVSPA 267
           RRH     E++ KR YS  SRSRS+SV SRSVSPA
Sbjct: 357 RRH-----ESTRKRGYSSRSRSRSQSVTSRSVSPA 369

[Close]

BLAST of Moc03g02330 vs. ExPASy TrEMBL
Match: A0A6J1GAS3 (serine/arginine-rich splicing factor SR45a-like isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC111452466 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 1.4e-57
Identity = 174/263 (66.16%), Postives = 184/263 (69.96%), Query Frame = 0


Query: 6   RARRRRGRTPTPGRYLGLRTVRVRRRSHSYSPRHSPSYSPYRRSSSRSSRYSSERSRSRS 65
           +ARRRRGRTPTPGRY GLRTV VRRR  SYS R SPSYSPY RS S SS YSS+RSRSRS
Sbjct: 117 KARRRRGRTPTPGRYFGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRS 176

Query: 66  HSPYRHRRSYGSPYHHRSYSPYSRRRYDSPYYRCHRSYSRSGSRSPYCRSPTRRHDRSYS 125
           HSP R RRS  SPY +RSYSPYSRRRYDSPYYR HRSYSR  S SP  R PTRRHDRSYS
Sbjct: 177 HSPNRRRRSNDSPYRYRSYSPYSRRRYDSPYYRRHRSYSR--SHSPCSRLPTRRHDRSYS 236

Query: 126 SYYDYYSRDDCYYRRHRYRSVSRSVSPKARISGRGYSRSYSPRPRRTL-RSYSRSPSSVR 185
             YDY S  D YYRRHR RSVSRSVSPKAR+S R YS SYSPR RR+  RS+SRS     
Sbjct: 237 P-YDYCS-PDLYYRRHRDRSVSRSVSPKARVSSRRYSCSYSPRHRRSASRSHSRS----- 296

Query: 186 IYSRSPSLELRSYSRSVSPERSKRSGSYLEGRS-SRSRSRSRSRSHTFRRHSHKVYENSG 245
                     RSYSRS+SPERS+R  S+    S  R  SRSRSRSHT R H         
Sbjct: 297 ----------RSYSRSLSPERSRRFRSHSHSISPERRSSRSRSRSHTPRHHK-------- 348

Query: 246 KREYSGGSRSRSRSVVSRSVSPA 267
           +  YSGG    S SV SRSVSPA
Sbjct: 357 RGGYSGG----SGSVASRSVSPA 348

[Close]

BLAST of Moc03g02330 vs. ExPASy TrEMBL
Match: A0A6J1GBJ2 (serine/arginine-rich splicing factor SR45a-like isoform X5 OS=Cucurbita moschata OX=3662 GN=LOC111452466 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 2.4e-57
Identity = 174/263 (66.16%), Postives = 184/263 (69.96%), Query Frame = 0


Query: 6   RARRRRGRTPTPGRYLGLRTVRVRRRSHSYSPRHSPSYSPYRRSSSRSSRYSSERSRSRS 65
           +ARRRRGRTPTPGRY GLRTV VRRR  SYS R SPSYSPY RS S SS YSS+RSRSRS
Sbjct: 117 KARRRRGRTPTPGRYFGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRS 176

Query: 66  HSPYRHRRSYGSPYHHRSYSPYSRRRYDSPYYRCHRSYSRSGSRSPYCRSPTRRHDRSYS 125
           HSP R RRS  SPY +RSYSPYSRRRYDSPYYR HRSYSR  S SP  RSPTRR DRSYS
Sbjct: 177 HSPNRRRRSNDSPYRYRSYSPYSRRRYDSPYYRRHRSYSR--SHSPCSRSPTRRRDRSYS 236

Query: 126 SYYDYYSRDDCYYRRHRYRSVSRSVSPKARISGRGYSRSYSPRPRRTL-RSYSRSPSSVR 185
             YDY S  D YYRRHR RSVSRSVSPKAR+S R YS SYSPR RR+  RS+SRS     
Sbjct: 237 P-YDYCS-PDLYYRRHRDRSVSRSVSPKARVSSRRYSCSYSPRHRRSASRSHSRS----- 296

Query: 186 IYSRSPSLELRSYSRSVSPERSKRSGSYLEGRS-SRSRSRSRSRSHTFRRHSHKVYENSG 245
                     RSYSRS+SPERS+R  S+    S  R  SRSRSRSHT R H         
Sbjct: 297 ----------RSYSRSLSPERSRRFRSHSHSISPERRSSRSRSRSHTPRHHK-------- 348

Query: 246 KREYSGGSRSRSRSVVSRSVSPA 267
           +  YSGG    S SV SRSVSPA
Sbjct: 357 RGGYSGG----SGSVASRSVSPA 348

[Close]

BLAST of Moc03g02330 vs. TAIR 10
Match: AT1G07350.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 90.9 bits (224), Expect = 1.7e-18
Identity = 124/278 (44.60%), Postives = 138/278 (49.64%), Query Frame = 0


Query: 6   RARRRRGRTPTPGRYLGLRTVRVRRRSHSYSPRHSPSYSPYRRSSSRSSRYSSERSRSRS 65
           +ARRRRGRTPTPG+YLGLRT R R +S SYSPR S S      S SRS  YSS+  R RS
Sbjct: 150 KARRRRGRTPTPGKYLGLRTARGRHKSPSYSPRRSVSC-----SRSRSRSYSSD--RGRS 209

Query: 66  HSPYRHRRSYGSPYHHRSYSPYSRRRYDSPYYRCHRSYSRSGSRSPYCRSPTRRHDRSYS 125
           +SP     SYG      SYSP+ RRR         R YS S S SP  R   RR DRSYS
Sbjct: 210 YSP-----SYGRRGRSSSYSPFYRRR---------RFYSPSRSPSPDDRY-NRRRDRSYS 269

Query: 126 SYY-----------DYYSRDDCYYRRHRYRSVSRSVSPKARISG-------RGYSRSYSP 185
            YY           +  +RD   Y   RYRS SRS SP+ R          RG  RSYSP
Sbjct: 270 PYYRRRDRSRSYSRNCRARDRSPYYMRRYRSRSRSYSPRYRARDRSCSPYYRGRDRSYSP 329

Query: 186 RPRRTLRSYSRSPSSVRIYSRSPSLELRSYSRSVSPERSKRSGSYLEGRSSRSRSRSRSR 245
             +   RSY  SP S R Y R      RS S SVSP     S S +  R  R  SRS+SR
Sbjct: 330 HYQGRDRSY--SPES-RYYRRH-----RSVSGSVSPGGRSMSRS-ISPRKGRKESRSKSR 382

Query: 246 SHTFRRHSHKVYENSGKREYSGGSRSRSRSVVSRSVSP 266
            H   R S   +  S            +RS  SRSVSP
Sbjct: 390 RHD--RQSSMCHSRS------------ARSSTSRSVSP 382

The following BLAST results are available for this feature:

BLAST of Moc03g02330 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150941.1	8.4e-129	99.23	serine/arginine-rich splicing factor SR45a-like isoform X2 [Momordica charantia]	[more]
XP_022150940.1	8.4e-129	99.23	serine/arginine-rich splicing factor SR45a-like isoform X1 [Momordica charantia]	[more]
XP_038894517.1	6.7e-62	70.68	serine/arginine-rich splicing factor SR45a isoform X1 [Benincasa hispida]	[more]
XP_008457405.1	2.6e-61	68.00	PREDICTED: serine/arginine-rich splicing factor SR45a-like [Cucumis melo]	[more]
KAG6607292.1	2.8e-60	67.68	Serine/arginine-rich splicing factor SR45a, partial [Cucurbita argyrosperma subs...	[more]

BLAST of Moc03g02330 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84TH4	2.4e-17	44.60	Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana OX=3702 GN=SR...	[more]

BLAST of Moc03g02330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D9V3	4.0e-129	99.23	serine/arginine-rich splicing factor SR45a-like isoform X1 OS=Momordica charanti...	[more]
A0A6J1DD22	4.0e-129	99.23	serine/arginine-rich splicing factor SR45a-like isoform X2 OS=Momordica charanti...	[more]
A0A1S3C508	1.2e-61	68.00	serine/arginine-rich splicing factor SR45a-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1GAS3	1.4e-57	66.16	serine/arginine-rich splicing factor SR45a-like isoform X4 OS=Cucurbita moschata...	[more]
A0A6J1GBJ2	2.4e-57	66.16	serine/arginine-rich splicing factor SR45a-like isoform X5 OS=Cucurbita moschata...	[more]

BLAST of Moc03g02330 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07350.1	1.7e-18	44.60	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 235..251
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 168..208
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 252..266
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 144..266
None	No IPR available	PANTHER	PTHR15241:SF351	SERINE/ARGININE-RICH SPLICING FACTOR SR45A-LIKE ISOFORM X1	coord: 6..154
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 6..154

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc03g02330.1	Moc03g02330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048026	positive regulation of mRNA splicing, via spliceosome
cellular_component	GO:0005681	spliceosomal complex
molecular_function	GO:0003723	RNA binding