Moc03g02320 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc03g02320
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	serine/arginine-rich splicing factor SR45a-like isoform X1
Location	chr3: 1749597 .. 1750877 (+)
RNA-Seq Expression	Moc03g02320
Synteny	Moc03g02320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTAGTTCTCTCTCTCTCTCTCTCTCTCTGATTTGATGAATTTTACACGTCTTTTCCTTATTTGAAACGATATGTTGGGATTCTGATCTATATGCGCATTTGATTTTGCTTTCAATGATGTTTAGTTGAAGAATTAGGTTCCGGTTATTACTTCAATTTATTTTTTCTGTGATTAGCATGTTTGTGGGATGCTGATGGAGTATTTTCTGCATTCTTCATGGAAATTTTGGGTTAAATTATTATCTCATCGGAGTATCTATTATATCTCTAACCATTTGAAGTCATGAATGTTCTATTTCTTTTTTTGTCCGTGTTCCGATGAATATTCAATTGAAGGTTCGGATTTACTGACTGTTCGATATGAGATGACATTCATATACTCAACAAAGCTGTTCATATTTAGTTTTGTTTTGTCTGATCTTGTCGCAGATGTCGTACTCTAGAAAGTCAAGGTATTCCCGCTCTCCTTCTTACGAACGATCGCTTTCAAGATCCCTGTCAAGGTCGAGGAGCCGTTCGAGGTACTTTTTGCTCGGGAATCATCTGCTTGCTCGATTTTTCCTATCTTCTCTAGATCATTTGTACATGGTGTATTTATATTTATTTTGTGGATTCTTAATTTGTTTTCAGGAGTCCTTCAAGCGACGTTGAAAATCCTGGCAACAATTTGTACGTCACTGGTCTGTCACCTAGAATGACAAGAAGAGAACTTGAGAAGCATTTTTCCGCTGAGGGAACAGTACGTCATGGTTTGCTTATTTTCTTTTAAGGCAATTTTTATGGCTTGTATTTCTGGTGGTGGTGTATGTGTTTGTAAAATCTTTTTCTGGTGATTAGATTTATAGACTATTTTTTTAGTTTGTGAAAAGATCTGGTGGTGTATGTGTTGGTAATTATTATTATTATTTTTTTGCTGGGGATTAAATGAACTTTTTTGTTCTCTAGGTGTTAGATGTTCATCTTGTAGCTGATCCATGGACCAGAGAATCTCGTGGATTTGGATTCATTACCATGTCTAGTAATGAGGAGGCTGAACGTTGCATCAAATATCTGAATCGCTCTGTGCTTGAGGGTCGAATAATTACTGTGGAGAAGGTAAAAAGTTAAACCAAGTATTTTTCATACATTCGAGTTGTTTTTCATTGTTAGTTACTATTGTCTTGTTCTTCTCCAAATATTAATGGGAGTTCGGATGGTTTATTGTATGAGATTTGAACTATAAGATTTTTTGCTTCCTTGGGCTTGAAGTTTTTTTGGCAGCAGGTTAGCTGTGTGTAG

mRNA sequence

ATGATGTCGTACTCTAGAAAGTCAAGGTATTCCCGCTCTCCTTCTTACGAACGATCGCTTTCAAGATCCCTGTCAAGGTCGAGGAGCCGTTCGAGGAGTCCTTCAAGCGACGTTGAAAATCCTGGCAACAATTTGTACGTCACTGGTCTGTCACCTAGAATGACAAGAAGAGAACTTGAGAAGCATTTTTCCGCTGAGGGAACAGTGTTAGATGTTCATCTTGTAGCTGATCCATGGACCAGAGAATCTCGTGGATTTGGATTCATTACCATGTCTAGTAATGAGGAGGCTGAACGTTGCATCAAATATCTGAATCGCTCTGTGCTTGAGGGTCGAATAATTACTGTGGAGAAGGTTAGCTGTGTGTAG

Coding sequence (CDS)

ATGATGTCGTACTCTAGAAAGTCAAGGTATTCCCGCTCTCCTTCTTACGAACGATCGCTTTCAAGATCCCTGTCAAGGTCGAGGAGCCGTTCGAGGAGTCCTTCAAGCGACGTTGAAAATCCTGGCAACAATTTGTACGTCACTGGTCTGTCACCTAGAATGACAAGAAGAGAACTTGAGAAGCATTTTTCCGCTGAGGGAACAGTGTTAGATGTTCATCTTGTAGCTGATCCATGGACCAGAGAATCTCGTGGATTTGGATTCATTACCATGTCTAGTAATGAGGAGGCTGAACGTTGCATCAAATATCTGAATCGCTCTGTGCTTGAGGGTCGAATAATTACTGTGGAGAAGGTTAGCTGTGTGTAG

Protein sequence

MMSYSRKSRYSRSPSYERSLSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRMTRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNEEAERCIKYLNRSVLEGRIITVEKVSCV

Homology

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BLAST of Moc03g02320 vs. NCBI nr
Match: XP_022150940.1 (serine/arginine-rich splicing factor SR45a-like isoform X1 [Momordica charantia])

HSP 1 Score: 228.0 bits (580), Expect = 4.3e-56
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   MMSYSRKSRYSRSPSYERSLSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRMTRRELE 60
           MMSYSRKSRYSRSPSYERSLSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRMTRRELE
Sbjct: 1   MMSYSRKSRYSRSPSYERSLSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRMTRRELE 60

Query: 61  KHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNEEAERCIKYLNRSVLEGRIITVEK 119
           KHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNEEAERCIKYLNRSVLEGRIITVEK
Sbjct: 61  KHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNEEAERCIKYLNRSVLEGRIITVEK 118

[Close]

BLAST of Moc03g02320 vs. NCBI nr
Match: XP_022970543.1 (serine/arginine-rich splicing factor SR45a-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 219.5 bits (558), Expect = 1.5e-53
Identity = 112/117 (95.73%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 2   MSYSRKSRYSRSPSYERSLSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRMTRRELEK 61
           MSYSR+SRYSRSPSY+RS+SRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPR+T+RELEK
Sbjct: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRVTKRELEK 60

Query: 62  HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNEEAERCIKYLNRSVLEGRIITVEK 119
           HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNEEAERCIKYLNRSVLEGRIITVEK
Sbjct: 61  HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNEEAERCIKYLNRSVLEGRIITVEK 117

[Close]

BLAST of Moc03g02320 vs. NCBI nr
Match: XP_022970544.1 (serine/arginine-rich splicing factor SR45a-like isoform X2 [Cucurbita maxima] >XP_022970545.1 serine/arginine-rich splicing factor SR45a-like isoform X3 [Cucurbita maxima])

HSP 1 Score: 219.5 bits (558), Expect = 1.5e-53
Identity = 112/117 (95.73%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 2   MSYSRKSRYSRSPSYERSLSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRMTRRELEK 61
           MSYSR+SRYSRSPSY+RS+SRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPR+T+RELEK
Sbjct: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRVTKRELEK 60

Query: 62  HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNEEAERCIKYLNRSVLEGRIITVEK 119
           HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNEEAERCIKYLNRSVLEGRIITVEK
Sbjct: 61  HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNEEAERCIKYLNRSVLEGRIITVEK 117

[Close]

BLAST of Moc03g02320 vs. NCBI nr
Match: XP_022970546.1 (serine/arginine-rich splicing factor SR45a-like isoform X4 [Cucurbita maxima])

HSP 1 Score: 219.5 bits (558), Expect = 1.5e-53
Identity = 112/117 (95.73%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 2   MSYSRKSRYSRSPSYERSLSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRMTRRELEK 61
           MSYSR+SRYSRSPSY+RS+SRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPR+T+RELEK
Sbjct: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRVTKRELEK 60

Query: 62  HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNEEAERCIKYLNRSVLEGRIITVEK 119
           HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNEEAERCIKYLNRSVLEGRIITVEK
Sbjct: 61  HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNEEAERCIKYLNRSVLEGRIITVEK 117

[Close]

BLAST of Moc03g02320 vs. NCBI nr
Match: XP_022964744.1 (serine/arginine-rich splicing factor SR45a-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 218.4 bits (555), Expect = 3.4e-53
Identity = 111/117 (94.87%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 2   MSYSRKSRYSRSPSYERSLSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRMTRRELEK 61
           MSYSR+SRYSRSPSY+RS+SRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPR+T+RELEK
Sbjct: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRVTKRELEK 60

Query: 62  HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNEEAERCIKYLNRSVLEGRIITVEK 119
           HFSAEGTVLDVHLVADPWTRESRGFGFITMSSN+EAERCIKYLNRSVLEGRIITVEK
Sbjct: 61  HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEK 117

[Close]

BLAST of Moc03g02320 vs. ExPASy Swiss-Prot
Match: Q84TH4 (Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana OX=3702 GN=SR45A PE=1 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 7.5e-35
Identity = 82/120 (68.33%), Postives = 96/120 (80.00%), Query Frame = 0


Query: 2   MSYSRKSRYSRSPS-YERSLSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSPRMTRRE 61
           MSYSR+SRYS S S Y++   RS+SRS SRS  RS SSD ENPGN+LYVTGLS R+T R+
Sbjct: 31  MSYSRRSRYSPSLSPYDKRRGRSVSRSLSRSPTRSVSSDAENPGNSLYVTGLSHRVTERD 90

Query: 62  LEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNEEAERCIKYLNRSVLEGRIITVEK 119
           LE HF+ EG V DVHLV DPWTRESRGFGFI+M S  +A RCI+ L+ SVL+GR+ITVEK
Sbjct: 91  LEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEK 150

[Close]

BLAST of Moc03g02320 vs. ExPASy Swiss-Prot
Match: Q10422 (Uncharacterized RNA-binding protein C25G10.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC25G10.01 PE=1 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.0e-12
Identity = 38/98 (38.78%), Postives = 59/98 (60.20%), Query Frame = 0


Query: 21  SRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRMTRRELEKHFSAEGTVLDVHLVADPWT 80
           + S +  +   +S     EN GN+L+V+G++ RM   EL++ FS  GTV  V ++ +P T
Sbjct: 79  NESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVT 138

Query: 81  RESRGFGFITMSSNEEAERCIKYLNRSVLEGRIITVEK 119
           + SRGFGF++ S+ EEA   I  LN     GR++ V+K
Sbjct: 139 KASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQK 176

[Close]

BLAST of Moc03g02320 vs. ExPASy Swiss-Prot
Match: Q80YR5 (Scaffold attachment factor B2 OS=Mus musculus OX=10090 GN=Safb2 PE=1 SV=2)

HSP 1 Score: 68.6 bits (166), Expect = 5.7e-11
Identity = 32/77 (41.56%), Postives = 52/77 (67.53%), Query Frame = 0


Query: 42  GNNLYVTGLSPRMTRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNEEAERCI 101
           G NL+V+GLS      +L+  FS  G V+   +V +  +  +R +GF+TMS+++EA +CI
Sbjct: 450 GRNLWVSGLSSSTRAADLKSLFSKHGKVIGAKVVTNARSPGARCYGFVTMSTSDEATKCI 509

Query: 102 KYLNRSVLEGRIITVEK 119
            +L+R+ L GR+I+VEK
Sbjct: 510 SHLHRTELHGRMISVEK 526

[Close]

BLAST of Moc03g02320 vs. ExPASy Swiss-Prot
Match: Q14151 (Scaffold attachment factor B2 OS=Homo sapiens OX=9606 GN=SAFB2 PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.3e-10
Identity = 32/77 (41.56%), Postives = 52/77 (67.53%), Query Frame = 0


Query: 42  GNNLYVTGLSPRMTRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNEEAERCI 101
           G NL+V+GLS      +L+  FS  G V+   +V +  +  +R +GF+TMS+++EA +CI
Sbjct: 406 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEATKCI 465

Query: 102 KYLNRSVLEGRIITVEK 119
            +L+R+ L GR+I+VEK
Sbjct: 466 SHLHRTELHGRMISVEK 482

[Close]

BLAST of Moc03g02320 vs. ExPASy Swiss-Prot
Match: Q39061 (RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-09
Identity = 33/72 (45.83%), Postives = 43/72 (59.72%), Query Frame = 0


Query: 45  LYVTGLSPRMTRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNEEAERCIKYL 104
           LYV  L   +T  EL + F   GTV+DV +V D  T  SRGFGF+TM S EEA+  ++  
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMF 177

Query: 105 NRSVLEGRIITV 117
           N S + GR + V
Sbjct: 178 NSSQIGGRTVKV 189

[Close]

BLAST of Moc03g02320 vs. ExPASy TrEMBL
Match: A0A6J1D9V3 (serine/arginine-rich splicing factor SR45a-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111018970 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 2.1e-56
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   MMSYSRKSRYSRSPSYERSLSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRMTRRELE 60
           MMSYSRKSRYSRSPSYERSLSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRMTRRELE
Sbjct: 1   MMSYSRKSRYSRSPSYERSLSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRMTRRELE 60

Query: 61  KHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNEEAERCIKYLNRSVLEGRIITVEK 119
           KHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNEEAERCIKYLNRSVLEGRIITVEK
Sbjct: 61  KHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNEEAERCIKYLNRSVLEGRIITVEK 118

[Close]

BLAST of Moc03g02320 vs. ExPASy TrEMBL
Match: A0A6J1I361 (serine/arginine-rich splicing factor SR45a-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111469489 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 7.4e-54
Identity = 112/117 (95.73%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 2   MSYSRKSRYSRSPSYERSLSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRMTRRELEK 61
           MSYSR+SRYSRSPSY+RS+SRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPR+T+RELEK
Sbjct: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRVTKRELEK 60

Query: 62  HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNEEAERCIKYLNRSVLEGRIITVEK 119
           HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNEEAERCIKYLNRSVLEGRIITVEK
Sbjct: 61  HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNEEAERCIKYLNRSVLEGRIITVEK 117

[Close]

BLAST of Moc03g02320 vs. ExPASy TrEMBL
Match: A0A6J1I474 (serine/arginine-rich splicing factor SR45a-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469489 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 7.4e-54
Identity = 112/117 (95.73%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 2   MSYSRKSRYSRSPSYERSLSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRMTRRELEK 61
           MSYSR+SRYSRSPSY+RS+SRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPR+T+RELEK
Sbjct: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRVTKRELEK 60

Query: 62  HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNEEAERCIKYLNRSVLEGRIITVEK 119
           HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNEEAERCIKYLNRSVLEGRIITVEK
Sbjct: 61  HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNEEAERCIKYLNRSVLEGRIITVEK 117

[Close]

BLAST of Moc03g02320 vs. ExPASy TrEMBL
Match: A0A6J1I0W1 (serine/arginine-rich splicing factor SR45a-like isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111469489 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 7.4e-54
Identity = 112/117 (95.73%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 2   MSYSRKSRYSRSPSYERSLSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRMTRRELEK 61
           MSYSR+SRYSRSPSY+RS+SRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPR+T+RELEK
Sbjct: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRVTKRELEK 60

Query: 62  HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNEEAERCIKYLNRSVLEGRIITVEK 119
           HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNEEAERCIKYLNRSVLEGRIITVEK
Sbjct: 61  HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNEEAERCIKYLNRSVLEGRIITVEK 117

[Close]

BLAST of Moc03g02320 vs. ExPASy TrEMBL
Match: A0A6J1HP51 (serine/arginine-rich splicing factor SR45a-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111464732 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.7e-53
Identity = 111/117 (94.87%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 2   MSYSRKSRYSRSPSYERSLSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRMTRRELEK 61
           MSYSR+SRYSRSPSY+RS+SRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPR+T+RELEK
Sbjct: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRVTKRELEK 60

Query: 62  HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNEEAERCIKYLNRSVLEGRIITVEK 119
           HFSAEGTVLDVHLVADPWTRESRGFGFITMSSN+EAERCIKYLNRSVLEGRIITVEK
Sbjct: 61  HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEK 117

[Close]

BLAST of Moc03g02320 vs. TAIR 10
Match: AT1G07350.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 147.9 bits (372), Expect = 5.3e-36
Identity = 82/120 (68.33%), Postives = 96/120 (80.00%), Query Frame = 0


Query: 2   MSYSRKSRYSRSPS-YERSLSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSPRMTRRE 61
           MSYSR+SRYS S S Y++   RS+SRS SRS  RS SSD ENPGN+LYVTGLS R+T R+
Sbjct: 31  MSYSRRSRYSPSLSPYDKRRGRSVSRSLSRSPTRSVSSDAENPGNSLYVTGLSHRVTERD 90

Query: 62  LEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNEEAERCIKYLNRSVLEGRIITVEK 119
           LE HF+ EG V DVHLV DPWTRESRGFGFI+M S  +A RCI+ L+ SVL+GR+ITVEK
Sbjct: 91  LEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEK 150

[Close]

BLAST of Moc03g02320 vs. TAIR 10
Match: AT1G07350.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 147.9 bits (372), Expect = 5.3e-36
Identity = 82/120 (68.33%), Postives = 96/120 (80.00%), Query Frame = 0


Query: 2   MSYSRKSRYSRSPS-YERSLSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSPRMTRRE 61
           MSYSR+SRYS S S Y++   RS+SRS SRS  RS SSD ENPGN+LYVTGLS R+T R+
Sbjct: 1   MSYSRRSRYSPSLSPYDKRRGRSVSRSLSRSPTRSVSSDAENPGNSLYVTGLSHRVTERD 60

Query: 62  LEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNEEAERCIKYLNRSVLEGRIITVEK 119
           LE HF+ EG V DVHLV DPWTRESRGFGFI+M S  +A RCI+ L+ SVL+GR+ITVEK
Sbjct: 61  LEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEK 120

[Close]

BLAST of Moc03g02320 vs. TAIR 10
Match: AT4G35785.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 128.6 bits (322), Expect = 3.3e-30
Identity = 73/116 (62.93%), Postives = 85/116 (73.28%), Query Frame = 0


Query: 3   SYSRKSRYSRSPSYERSLSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRMTRRELEKH 62
           S SR    SRS S  R +S S SR RSRSRS  S+VENPG  LYVTGLS R+T ++LE H
Sbjct: 31  SRSRPRLRSRSRSLPRPVSPSRSRGRSRSRSRGSEVENPGTTLYVTGLSTRVTDKDLEAH 90

Query: 63  FSAEGTVLDVHLVADPWTRESRGFGFITMSSNEEAERCIKYLNRSVLEGRIITVEK 119
           F+ EG V    LV +P TR SRGF F+TMSS ++AERCIKYLN+SVLEGR ITVE+
Sbjct: 91  FAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGRYITVER 146

[Close]

BLAST of Moc03g02320 vs. TAIR 10
Match: AT4G35785.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 124.0 bits (310), Expect = 8.2e-29
Identity = 73/117 (62.39%), Postives = 85/117 (72.65%), Query Frame = 0


Query: 3   SYSRKSRYSRSPSYERSLSRSLSRSRSRSRSPS-SDVENPGNNLYVTGLSPRMTRRELEK 62
           S SR    SRS S  R +S S SR RSRSRS   S+VENPG  LYVTGLS R+T ++LE 
Sbjct: 31  SRSRPRLRSRSRSLPRPVSPSRSRGRSRSRSRGRSEVENPGTTLYVTGLSTRVTDKDLEA 90

Query: 63  HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNEEAERCIKYLNRSVLEGRIITVEK 119
           HF+ EG V    LV +P TR SRGF F+TMSS ++AERCIKYLN+SVLEGR ITVE+
Sbjct: 91  HFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGRYITVER 147

[Close]

BLAST of Moc03g02320 vs. TAIR 10
Match: AT4G35785.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 124.0 bits (310), Expect = 8.2e-29
Identity = 73/117 (62.39%), Postives = 85/117 (72.65%), Query Frame = 0


Query: 3   SYSRKSRYSRSPSYERSLSRSLSRSRSRSRSPS-SDVENPGNNLYVTGLSPRMTRRELEK 62
           S SR    SRS S  R +S S SR RSRSRS   S+VENPG  LYVTGLS R+T ++LE 
Sbjct: 31  SRSRPRLRSRSRSLPRPVSPSRSRGRSRSRSRGRSEVENPGTTLYVTGLSTRVTDKDLEA 90

Query: 63  HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNEEAERCIKYLNRSVLEGRIITVEK 119
           HF+ EG V    LV +P TR SRGF F+TMSS ++AERCIKYLN+SVLEGR ITVE+
Sbjct: 91  HFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGRYITVER 147

The following BLAST results are available for this feature:

BLAST of Moc03g02320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150940.1	4.3e-56	100.00	serine/arginine-rich splicing factor SR45a-like isoform X1 [Momordica charantia]	[more]
XP_022970543.1	1.5e-53	95.73	serine/arginine-rich splicing factor SR45a-like isoform X1 [Cucurbita maxima]	[more]
XP_022970544.1	1.5e-53	95.73	serine/arginine-rich splicing factor SR45a-like isoform X2 [Cucurbita maxima] >X...	[more]
XP_022970546.1	1.5e-53	95.73	serine/arginine-rich splicing factor SR45a-like isoform X4 [Cucurbita maxima]	[more]
XP_022964744.1	3.4e-53	94.87	serine/arginine-rich splicing factor SR45a-like isoform X2 [Cucurbita moschata]	[more]

BLAST of Moc03g02320 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84TH4	7.5e-35	68.33	Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana OX=3702 GN=SR...	[more]
Q10422	4.0e-12	38.78	Uncharacterized RNA-binding protein C25G10.01 OS=Schizosaccharomyces pombe (stra...	[more]
Q80YR5	5.7e-11	41.56	Scaffold attachment factor B2 OS=Mus musculus OX=10090 GN=Safb2 PE=1 SV=2	[more]
Q14151	1.3e-10	41.56	Scaffold attachment factor B2 OS=Homo sapiens OX=9606 GN=SAFB2 PE=1 SV=1	[more]
Q39061	1.1e-09	45.83	RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 ...	[more]

BLAST of Moc03g02320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D9V3	2.1e-56	100.00	serine/arginine-rich splicing factor SR45a-like isoform X1 OS=Momordica charanti...	[more]
A0A6J1I361	7.4e-54	95.73	serine/arginine-rich splicing factor SR45a-like isoform X2 OS=Cucurbita maxima O...	[more]
A0A6J1I474	7.4e-54	95.73	serine/arginine-rich splicing factor SR45a-like isoform X1 OS=Cucurbita maxima O...	[more]
A0A6J1I0W1	7.4e-54	95.73	serine/arginine-rich splicing factor SR45a-like isoform X4 OS=Cucurbita maxima O...	[more]
A0A6J1HP51	1.7e-53	94.87	serine/arginine-rich splicing factor SR45a-like isoform X2 OS=Cucurbita moschata...	[more]

BLAST of Moc03g02320 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07350.1	5.3e-36	68.33	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G07350.2	5.3e-36	68.33	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G35785.1	3.3e-30	62.93	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G35785.2	8.2e-29	62.39	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G35785.3	8.2e-29	62.39	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 44..117 e-value: 6.1E-21 score: 85.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 45..114 e-value: 9.3E-16 score: 57.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 43..121 score: 16.124914
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..120 e-value: 4.2E-27 score: 97.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..50
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 10..119
None	No IPR available	PANTHER	PTHR15241:SF351	SERINE/ARGININE-RICH SPLICING FACTOR SR45A-LIKE ISOFORM X1	coord: 10..119
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 31..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc03g02320.1	Moc03g02320.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding