Moc03g01520 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc03g01520
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr3: 1148514 .. 1154192 (-)
RNA-Seq Expression	Moc03g01520
Synteny	Moc03g01520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCTCGATTCGAAGTGGACAAGTTTGATGGAAAAGGCGATTTCTCGTTGTGGAGGCGCAAGACCAAGGCGGTGTTAGTTCAGCAAAAGGTAGCGAAGGCGTTAGAGGATCCAGCCAAACTATCTGGTTTGAAAGAAGGAGAGTATAAGGAATGGGATGAAACGGCATTCAGTACGATTATCCTGTATCTGGCAGATAATATGTTGCGTCAATTGGGAGAAGAAGCCACGGCCCGAGAGGTATGGTCTAAATTGGAATCTCTTTACCTTTCCAAATCACTTCCTAACAAAATTTATCTAAAAGAGAAACTCTTTGGTTTTCGGATGGATCAATCAAAAGACTTGGAGGAGAATTTAGATGAATTTACAAAGATAATAGCCGATTTAGCAAACTCTGGAGAGAAGGTTGACACAGAAAATCAGGCTGTTATACTCTTAAATTCTTTACCTAAAAATTACAAAGAAGTTAAATCAGCTATTAAATATGGTAGAGATAGCTTGACTTTAGACATTGTGTTAGGAGCATTGAGATCGAGAAACCTTGAATTGAAGGTTGGGAAGAAGGAAGGTGAAGCTCTCTATGGTCGAGGTAGGCCGGATAAGAAAAATGGAAATAAGAGATGGAAAAGTAGATCTAAGTCTCAAGGGAAGGTAAAAAGATGTTATAACTGTAACAAAGAAGGACATATTCGTCATTTTTGCCCTAAATTGAAACAAAAAGATAATAAATATGACAAAAAGGAGGAAAATAGCTCAGCAAATGTAACTGATGGTTACGACTCAGCAGAAGTTTTACTTGTTTCTGAAAAATCTGCATCTGATGAATGGATTTTAGACTCAGGATGTACAAACCATATGACCTATAATAGAGATTTGTTGATTGATTTTAAGCCTATAACTAGTGGGAAGGTTTTAATGGGAAACGATCAGATTTGTTCTGTAAAAGGCATAGGGGCAGTGAATCTATTACTTGATAATGGTCAAGTTAAAATACTTCCAGATGTAAGACTTGTGCTGAGTTGAAACGAAATCTGATTTCATTAGGAACCTTAGACAAATCTGTTTATAACTTTAAATCAGCAGGAGGAAGCTTGAAAGCCTTTAAAGGACTGTTGCTAAAGATGCAAGGGAATCTTGAAAATGGGTTATATGTTTTAAATGGTAAAGCAGTAGGTGGAGCTACAGCTTTGACAATAAATTCTGACCATAAATTGACAGAGCTTTGGCACAAAAGATTAGCTCATGTAAGTGAAAAAGGCATGAGTTATCTTTCAAAGCAAGGTTTATTGGGTAAATTGAAACAAGTAGATCTTAATTTTTGTGAACATCATGTGCTAGGAAAGGCTACTAAAGTTCGTTTTGGGGCAGCCACACATTGCACCAAAGAGAAATTGGAATATCTTCATGCTGATCTTTGGGGGCCAGCAAGAACTAAAACTCATGGTGGAGCAAACTATTTTCTCTCCATCATTGACGATTTTAGTAGAAAGCTGTGGGTATTTATTTTAAAACACAAAGATGGAGTGTTTGAGGTCTTCAAAGATTGGTTAGTAATGATTCAAAATCAGATGAGTAAAAAGGTAAAAGTGATAAGAACGGATAATGGGCTGGAGTTCTTAAACCTTAAGTTTGCTGAATTATGTAAGATTACGGGATTAAGAGACATCTCATTGTGAAGGCAAATCCTCAACAAAATGGTCTGGCTGAGAGATATAACAGGACCATTTTAGAAAGAGTGAGATGTATGATAGCTCATGCTGGTTTGCCTAAAACTTTTTGGGGAGAAGCAGTAAAAACAGCTTGTTATTTGATTAACCGTTGTCCATCTTCAGCTTTGAACTTTAAAACTCCACAAGAAGCTTGGACAGGCAAACCACCAGACTTGAGCAATCTGAGAATATTCGGATGTATGGCTTATGCTCATATAAAACAAGATAAGTTACAACCAAGAGCAATGAGGTGTATGTTCTTGGGATATCCTGATGGAGTTAAAGGCTATAAATTATGGTCTTTAGAATCTGGAGGAGCAAGGACTTTAATCAACAGAGATGTTGTTTTTAATGAGAATGAGATGCCATATCTGAAGTCAAAAAAATTACCAACAACCTCAGTTGAAAAGGACAAGAAGCTAGAGATGGAGTTGCGTAGTACTAGAACTGATAATTCTGAAGTTATTGTTGGTGAACCATCAATGTCTCAAGAGGAAAGTACAACTGAAGACATTGATGTTGAAAATTTAAGACAAGAAGCAGTAGCTGAACCTTCAATTGCAGAGTATCAGCTTACTAGAGATAGAAAGAAAAGAAAAATAAGGCCTCCCTCACGCTATGGTCAAGCTGATTTAGTGGCTTACGATTTGATGGTAGCTACTGAATCAATTGGCATAGAGCCTATCACTCTTAATAAGGCACTGAAATCAAAAGATAGTCACTTATGGATAAATGCAATGGAAGAGTAACTTAATTCTTTGAAAAGAAACGAGACGTGGGAGCTAGTTGACAAACCGATGGGACAAAAAGTAGTGGATTGTAAATGGGTCTACAAGATTAAACCTCAGTCAGTTAATGATTTAAAACCTCGATACAAGGCAAGGTTAGTAGCGAGAGGGTTCACTCAGCAAGCAGGGATGGATTATAATGAAGTTTACTCACCTGTGGTTAGACACTCAACTATTAGAGTTATTCTGTCACTAGTTGCTCATTTTGATTGGGAACTTGAGCAAATGGATGTAACTACGGCATTTCTGAATGGAGAATTAGAAGAGACCATATTCATGAATCAACCACCAGGATTTAAGAAAAAGGGTGAAGAATCGAAGATATGTCTACTGAAACGTTCATTATATGGTCTAAAACAATCACCTAGGCAATGGAATAAAAGATTTGATTCTTTTATATTAGCAAATGGTTTTGTAAGAAGCTCTTATGATCATTGTGTTTACTGGAAAAGGATGTTGAACTCTACAACAATATACTTAATGATTTATGTTGATGATATGTTGATCTCAGAGAGCTCAAGCAAAATCTCAGAATTGAAAGATTTGTTGAAAAGTGAGTTTGAGATGAAGGATCTTGGTTCAGCAAGGAGGATTCTTGGAATGGAGATTGTGAGAAACAGGGATCAAAGAACTCTAAAATTGCACCAACAAGATTATGTAGAGAGAATTCTTAAAAGATTCAACATGGGAGACTCAAAACCAGTAAGTGTACCAATTGCTAAACATTTTAAATTGTCCCTTGATCAATGCCCTAAGTCAGCAGAAGATACAAGGGAAATGGAAGGAGTCTCATATGCAGAAGCGATTGGTAGTATTATGTACTCTATGGTATGCACAAGACCTGACTTGGCATATGCAATGAGTATGATTAGTAGGTTTATGGCTAATCCGGGTAGAACTCATTGGCATGCAGTTAAATGGGTGTTAAGATATCTTGTTGGCACAACAGAGTATTGTTTGAATTTTAAACAATCAGAAGAGTCAGATGCAATAGTAAAAGGTTTTGTAGACTCGGATTATGCAGCTGATCTTCTTGATAGAAGGAGATCACTAACAGGCTATTTTTTTTCTGTGTTTGGAAATGTTGTTAGCTGGAGATCAAGTCTGCAAACTGTGGTTGCATTGTCCGCGACAGAGTCGGAATATATGGCTATTACTGAAGCAATTAAGGAGGGAATTTGGTTGAAAGGGCTGGTAAGTGAATTGCTTAATGAAGAACGTACAACAAATGTACGGACTGATAGTCAGAGTGCACTACATTTAGCCAAGAATCCAGCTCATCATGAAAGATCGAAACATATAGATGTTCGATTTCATTTTATCAGAGATGTAATTGAATCTGATCAGGTGAAGCTACTGAAGGTGCCCTCACAAGAGAATCCAGCAGATGCACTCACCAAAACAATAACCTGTAGTAAGTTCGCTTATTTTCTGAATTTACTACAGGTTGGTAAAGGTTGAATGTTTAAAGAATAAGAGAGCAGAGAGAATTTGAGTTCATATCAGAGAGTGTATAAGTCAAGGTGGAGTTTTGTTCGAATTGATTTATAGCACTAAAGATCATTAGCTGTTGATCAATTGGGCTTTTAATCTTGTTGATGTGTAAGCCCAATTGTTACCCACGTTGGCTTGATGTGTATAGAGGGCCTGTGTTAGAATTTCTCTCTCTCTCATATGTAGGCATGATTTAGCCGAACCACTCTAAACTCGTGTGCGGCATTTTTCTTCCCTCTGTTCTTAATTTTTCCTTTTACTGTTCATCTGCTTCTATTCAACTTTTGCTGAATTAGAATCTGCTACATTGTTAATTAGTATTCACAACCAATTTGAAATACTTTAATGAAATTGAAATTAAAAGGAGATCTAAGAAAGTTGTTGCCAATTGACTCTTACCGAATTGGTTTGGGTCTATGCTGGATTGATGTCGAAAGGGTTCTGCAGTCGAAAGTTGATGCCAATAGGTGGATGGGTAAAATGAATCTTGGTTCAATCGAGGTCAGCAGGTCTTGAGTTTGGAGGAGATCGCATCGCTCGGAGATGGACCGACTATAGGTCGTTGCGTTACTGCGGAGAGGAAGGCATTCAGTTGGCATGGGTAGTGCGTCAAAGAGCTAGGAGGGTGTTGCAGTTTCGTCGCTTGACTGACCTAAACTTGACGATGTTAATGAGATATGTCCGATTTTTGAAAAATTTTATTATTCTAGTACCTTTTTTGATGTGACTATCATACGTGAAATTACATTCCGCTCATTTCCATTAATCAGGTTCTTTCCTCCGCTTCAATCTTATTCGTTTTTTTTTTCATTATTTTTATCTTTCAACGTTTTTCCAACTTTGATTTCTTATTTTTCTGAACAATTTTTTCCTTGATCTCGGATCTCTCTTATTCGAATGTGGTGTTGGTTCGTTCATATACCTCTCTTCTCTACTCTAGTGTCACATGCCCACCAACTTTCACTTGGTTCATCCCTGTACTACATAGTAGTAGGAGAGGTTGCACTCTAATATCATTTGTAATGTCCATGCTCAGGATTCCAAATCTTTGATCTCGGGTGTTACAGTGGTAAAAAAATCAATAAATACGCTGTATCTAAACCAATATATGCAAGCGAGTAGTGATAATTATCATCGGAAAGGCTCTTCCGATGGTCTTTTCCTGACCTTTTGCCAAACAAAAAAAAAACGTCGAGATAGCTTTTCCCAATGTTTTTAAAGTTTTTTCCGACGTTTTTTTTCATCGGGAAAAGCCTCAATTCTAGTAGTGTAAACCAATATACAGAAGGGAATAGAGTAAACATAAAAGGAGAATGTATAATAAGGTGATAGACTAAGGGCCAAGACATGGTCGTTTTGATGTGTATTTTGTAGCTTTTACTTTCTTCCATCATGTCTCCAATAGTTAAGCTACACGTGTATGTCTCGTCCCTCTATTTAATGCATCTTTTTGTGCCTAGCATATGGAGCTGAAGTGTGCCTCTAATACTCGTGTTTCCTCTTTATTGTACACATTCCATTCATGGTTATCAGAGCCACAACTCTTGTTATGAAATTCTTGACATCTCTTCTTCTTCTTTTAACAGTGGTGGAGCTCCATCTACTGGCATTACAAACCATTTGATACCTCCCCACCTCCTCCGATTATCACCTCCAACAACCCAAACTCAACTTTTTTCCGTTAA

mRNA sequence

ATGGCAGCTCGATTCGAAGTGGACAAGTTTGATGGAAAAGGCGATTTCTCGTTGTGGAGGCGCAAGACCAAGGCGGTGTTAGTTCAGCAAAAGGTAGCGAAGGCGTTAGAGGATCCAGCCAAACTATCTGGTTTGAAAGAAGGAGAGTATAAGGAATGGGATGAAACGGCATTCAGTACGATTATCCTGTATCTGGCAGATAATATGTTGCGTCAATTGGGAGAAGAAGCCACGGCCCGAGAGTGGTGGAGCTCCATCTACTGGCATTACAAACCATTTGATACCTCCCCACCTCCTCCGATTATCACCTCCAACAACCCAAACTCAACTTTTTTCCGTTAA

Coding sequence (CDS)

ATGGCAGCTCGATTCGAAGTGGACAAGTTTGATGGAAAAGGCGATTTCTCGTTGTGGAGGCGCAAGACCAAGGCGGTGTTAGTTCAGCAAAAGGTAGCGAAGGCGTTAGAGGATCCAGCCAAACTATCTGGTTTGAAAGAAGGAGAGTATAAGGAATGGGATGAAACGGCATTCAGTACGATTATCCTGTATCTGGCAGATAATATGTTGCGTCAATTGGGAGAAGAAGCCACGGCCCGAGAGTGGTGGAGCTCCATCTACTGGCATTACAAACCATTTGATACCTCCCCACCTCCTCCGATTATCACCTCCAACAACCCAAACTCAACTTTTTTCCGTTAA

Protein sequence

MAARFEVDKFDGKGDFSLWRRKTKAVLVQQKVAKALEDPAKLSGLKEGEYKEWDETAFSTIILYLADNMLRQLGEEATAREWWSSIYWHYKPFDTSPPPPIITSNNPNSTFFR

Homology

[Close]

BLAST of Moc03g01520 vs. NCBI nr
Match: XP_022157856.1 (uncharacterized protein LOC111024471 isoform X3 [Momordica charantia])

HSP 1 Score: 106.3 bits (264), Expect = 1.8e-19
Identity = 53/82 (64.63%), Postives = 68/82 (82.93%), Query Frame = 0


Query: 1  MAARFEVDKFDGKGDFSLWRRKTKAVLVQQKVAKALEDPAKLSGLKEG-EYKEWDETAFS 60
          MAA+FE++ FDGKGDFSLW++K KA+LVQQKVAKAL+DP+KL+G K   E  E  E AFS
Sbjct: 1  MAAKFELEIFDGKGDFSLWKKKMKALLVQQKVAKALDDPSKLAGAKTAEEIVELQEIAFS 60

Query: 61 TIILYLADNMLRQLGEEATARE 82
          +IIL+LADN+LR++ +  TARE
Sbjct: 61 SIILHLADNVLRKIHDAKTARE 82

[Close]

BLAST of Moc03g01520 vs. NCBI nr
Match: XP_022157854.1 (uncharacterized protein LOC111024471 isoform X1 [Momordica charantia])

HSP 1 Score: 106.3 bits (264), Expect = 1.8e-19
Identity = 53/82 (64.63%), Postives = 68/82 (82.93%), Query Frame = 0


Query: 1  MAARFEVDKFDGKGDFSLWRRKTKAVLVQQKVAKALEDPAKLSGLKEG-EYKEWDETAFS 60
          MAA+FE++ FDGKGDFSLW++K KA+LVQQKVAKAL+DP+KL+G K   E  E  E AFS
Sbjct: 1  MAAKFELEIFDGKGDFSLWKKKMKALLVQQKVAKALDDPSKLAGAKTAEEIVELQEIAFS 60

Query: 61 TIILYLADNMLRQLGEEATARE 82
          +IIL+LADN+LR++ +  TARE
Sbjct: 61 SIILHLADNVLRKIHDAKTARE 82

[Close]

BLAST of Moc03g01520 vs. NCBI nr
Match: PON96088.1 (hypothetical protein TorRG33x02_080180, partial [Trema orientale])

HSP 1 Score: 92.4 bits (228), Expect = 2.6e-15
Identity = 46/85 (54.12%), Postives = 64/85 (75.29%), Query Frame = 0


Query: 3  ARFEVDKFDGKGDFSLWRRKTKAVLVQQKVAKALEDPAKL-SGLKEGEYKEWDETAFSTI 62
          ++ E++KFDGKGDF++W++K KAVLVQQK AKAL D + L   +K  E +E  ETA+S +
Sbjct: 4  SKIEIEKFDGKGDFNMWKKKMKAVLVQQKCAKALGDVSGLPETMKPSEKEELLETAYSLL 63

Query: 63 ILYLADNMLRQLGEEATAREWWSSI 87
          IL LADN+LRQ+ E+ TA + WS +
Sbjct: 64 ILNLADNVLRQVDEQDTAAKVWSKL 88

[Close]

BLAST of Moc03g01520 vs. NCBI nr
Match: KAA0050719.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 2.6e-15
Identity = 42/85 (49.41%), Postives = 58/85 (68.24%), Query Frame = 0


Query: 2  AARFEVDKFDGKGDFSLWRRKTKAVLVQQKVAKALEDPAKLSGLKEGEYKEWDETAFSTI 61
          + RFEV KF+G GDFSLWR+K +A+LVQ KVAK L++      + E E ++ DE A+STI
Sbjct: 3  STRFEVSKFNGHGDFSLWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYSTI 62

Query: 62 ILYLADNMLRQLGEEATAREWWSSI 87
          +LYL+D +LR + E  T  E W  +
Sbjct: 63 LLYLSDEVLRLVDEATTTGELWKKL 87

[Close]

BLAST of Moc03g01520 vs. NCBI nr
Match: KAA0067243.1 (retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa] >TYK10853.1 retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa])

HSP 1 Score: 92.0 bits (227), Expect = 3.4e-15
Identity = 42/85 (49.41%), Postives = 58/85 (68.24%), Query Frame = 0


Query: 2  AARFEVDKFDGKGDFSLWRRKTKAVLVQQKVAKALEDPAKLSGLKEGEYKEWDETAFSTI 61
          + RFEV KF+G GDF+LWR+K  A+LVQ KVAK L++   L  + E E ++ DE A+STI
Sbjct: 3  STRFEVSKFNGNGDFALWRKKIIAILVQHKVAKILDEGRLLENITESEKRDMDEMAYSTI 62

Query: 62 ILYLADNMLRQLGEEATAREWWSSI 87
          +LYL+D +LR + E  T  E W  +
Sbjct: 63 LLYLSDEVLRLVDEATTTGELWKKL 87

[Close]

BLAST of Moc03g01520 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-08
Identity = 30/84 (35.71%), Postives = 53/84 (63.10%), Query Frame = 0


Query: 4  RFEVDKFDGKGDFSLWRRKTKAVLVQQKVAKALE-DPAKLSGLKEGEYKEWDETAFSTII 63
          ++EV KF+G   FS W+R+ + +L+QQ + K L+ D  K   +K  ++ + DE A S I 
Sbjct: 5  KYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAASAIR 64

Query: 64 LYLADNMLRQLGEEATAREWWSSI 87
          L+L+D+++  + +E TAR  W+ +
Sbjct: 65 LHLSDDVVNNIIDEDTARGIWTRL 88

[Close]

BLAST of Moc03g01520 vs. ExPASy TrEMBL
Match: A0A6J1DZD8 (uncharacterized protein LOC111024471 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111024471 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 8.5e-20
Identity = 53/82 (64.63%), Postives = 68/82 (82.93%), Query Frame = 0


Query: 1  MAARFEVDKFDGKGDFSLWRRKTKAVLVQQKVAKALEDPAKLSGLKEG-EYKEWDETAFS 60
          MAA+FE++ FDGKGDFSLW++K KA+LVQQKVAKAL+DP+KL+G K   E  E  E AFS
Sbjct: 1  MAAKFELEIFDGKGDFSLWKKKMKALLVQQKVAKALDDPSKLAGAKTAEEIVELQEIAFS 60

Query: 61 TIILYLADNMLRQLGEEATARE 82
          +IIL+LADN+LR++ +  TARE
Sbjct: 61 SIILHLADNVLRKIHDAKTARE 82

[Close]

BLAST of Moc03g01520 vs. ExPASy TrEMBL
Match: A0A6J1DXR5 (uncharacterized protein LOC111024471 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111024471 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 8.5e-20
Identity = 53/82 (64.63%), Postives = 68/82 (82.93%), Query Frame = 0


Query: 1  MAARFEVDKFDGKGDFSLWRRKTKAVLVQQKVAKALEDPAKLSGLKEG-EYKEWDETAFS 60
          MAA+FE++ FDGKGDFSLW++K KA+LVQQKVAKAL+DP+KL+G K   E  E  E AFS
Sbjct: 1  MAAKFELEIFDGKGDFSLWKKKMKALLVQQKVAKALDDPSKLAGAKTAEEIVELQEIAFS 60

Query: 61 TIILYLADNMLRQLGEEATARE 82
          +IIL+LADN+LR++ +  TARE
Sbjct: 61 SIILHLADNVLRKIHDAKTARE 82

[Close]

BLAST of Moc03g01520 vs. ExPASy TrEMBL
Match: A0A5A7UB25 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold560G00190 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.3e-15
Identity = 42/85 (49.41%), Postives = 58/85 (68.24%), Query Frame = 0


Query: 2  AARFEVDKFDGKGDFSLWRRKTKAVLVQQKVAKALEDPAKLSGLKEGEYKEWDETAFSTI 61
          + RFEV KF+G GDFSLWR+K +A+LVQ KVAK L++      + E E ++ DE A+STI
Sbjct: 3  STRFEVSKFNGHGDFSLWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYSTI 62

Query: 62 ILYLADNMLRQLGEEATAREWWSSI 87
          +LYL+D +LR + E  T  E W  +
Sbjct: 63 LLYLSDEVLRLVDEATTTGELWKKL 87

[Close]

BLAST of Moc03g01520 vs. ExPASy TrEMBL
Match: A0A2P5FE65 (Uncharacterized protein (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_080180 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.3e-15
Identity = 46/85 (54.12%), Postives = 64/85 (75.29%), Query Frame = 0


Query: 3  ARFEVDKFDGKGDFSLWRRKTKAVLVQQKVAKALEDPAKL-SGLKEGEYKEWDETAFSTI 62
          ++ E++KFDGKGDF++W++K KAVLVQQK AKAL D + L   +K  E +E  ETA+S +
Sbjct: 4  SKIEIEKFDGKGDFNMWKKKMKAVLVQQKCAKALGDVSGLPETMKPSEKEELLETAYSLL 63

Query: 63 ILYLADNMLRQLGEEATAREWWSSI 87
          IL LADN+LRQ+ E+ TA + WS +
Sbjct: 64 ILNLADNVLRQVDEQDTAAKVWSKL 88

[Close]

BLAST of Moc03g01520 vs. ExPASy TrEMBL
Match: A0A5A7VGM4 (Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00240 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.7e-15
Identity = 42/85 (49.41%), Postives = 58/85 (68.24%), Query Frame = 0


Query: 2  AARFEVDKFDGKGDFSLWRRKTKAVLVQQKVAKALEDPAKLSGLKEGEYKEWDETAFSTI 61
          + RFEV KF+G GDF+LWR+K  A+LVQ KVAK L++   L  + E E ++ DE A+STI
Sbjct: 3  STRFEVSKFNGNGDFALWRKKIIAILVQHKVAKILDEGRLLENITESEKRDMDEMAYSTI 62

Query: 62 ILYLADNMLRQLGEEATAREWWSSI 87
          +LYL+D +LR + E  T  E W  +
Sbjct: 63 LLYLSDEVLRLVDEATTTGELWKKL 87

The following BLAST results are available for this feature:

BLAST of Moc03g01520 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157856.1	1.8e-19	64.63	uncharacterized protein LOC111024471 isoform X3 [Momordica charantia]	[more]
XP_022157854.1	1.8e-19	64.63	uncharacterized protein LOC111024471 isoform X1 [Momordica charantia]	[more]
PON96088.1	2.6e-15	54.12	hypothetical protein TorRG33x02_080180, partial [Trema orientale]	[more]
KAA0050719.1	2.6e-15	49.41	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0067243.1	3.4e-15	49.41	retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa...	[more]

BLAST of Moc03g01520 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.1e-08	35.71	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of Moc03g01520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DZD8	8.5e-20	64.63	uncharacterized protein LOC111024471 isoform X3 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1DXR5	8.5e-20	64.63	uncharacterized protein LOC111024471 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A5A7UB25	1.3e-15	49.41	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A2P5FE65	1.3e-15	54.12	Uncharacterized protein (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_080...	[more]
A0A5A7VGM4	1.7e-15	49.41	Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. maku...	[more]

BLAST of Moc03g01520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34676:SF6	SUBFAMILY NOT NAMED	coord: 1..84
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 1..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc03g01520.1	Moc03g01520.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
molecular_function	GO:0005488	binding