Moc03g01470 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc03g01470
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionPMD domain-containing protein
Locationchr3: 1115636 .. 1116232 (+)
RNA-Seq ExpressionMoc03g01470
SyntenyMoc03g01470
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGCTATAGAAGACTATGCTGGTCCAGGGTCTAATCCAAAACACACACCACGGCGACCACCAGTGGTGGCTACAGAAGACTATGATGGTCCAGGGTCTAATCCAAAGCACACGCCACGACCACCGCCAATGGTGGCTACAAAAGACTATGCTGGTCCAGGATCTAATCCAAAGCACACACCGCGGCGACAACCAATGGTGGCTACAGAAGACTATGCTGGTCTAGGATCTAATCCAAAGCACACACCGTGGCGACCACCAATGGTGGCTACAGAAGACTGCTCTAGTCCAGGGTCTAATCCAAAGCACACACTACTGCGACCATCGATGGTGGCTACAGAAGACTATGCTGGTCCAGGGTCTAATCCAAAGCACACACTACTGCGACCATCGATGGTGGCTACAGAAGACTACGCTAGTCCAGGGTCTAATCCGAAACACACACTGCGGCGACCGCTGATGGTGGCTACAGAAGATTATGCTGGTCCAGGGTCTAATCCAAAGCACACACCACGACGACCGCCATTTCAGGTTTTAACCACTACTGGTGGCCGTCGCCAGCAGCCAGAGGGCCACGTCAGCAAGGAGCCCTGA

mRNA sequence

ATGATGGCTATAGAAGACTATGCTGGTCCAGGGTCTAATCCAAAACACACACCACGGCGACCACCAGTGGTGGCTACAGAAGACTATGATGGTCCAGGGTCTAATCCAAAGCACACGCCACGACCACCGCCAATGGTGGCTACAAAAGACTATGCTGGTCCAGGATCTAATCCAAAGCACACACCGCGGCGACAACCAATGGTGGCTACAGAAGACTATGCTGGTCTAGGATCTAATCCAAAGCACACACCGTGGCGACCACCAATGGTGGCTACAGAAGACTGCTCTAGTCCAGGGTCTAATCCAAAGCACACACTACTGCGACCATCGATGGTGGCTACAGAAGACTATGCTGGTCCAGGGTCTAATCCAAAGCACACACTACTGCGACCATCGATGGTGGCTACAGAAGACTACGCTAGTCCAGGGTCTAATCCGAAACACACACTGCGGCGACCGCTGATGGTGGCTACAGAAGATTATGCTGGTCCAGGGTCTAATCCAAAGCACACACCACGACGACCGCCATTTCAGGTTTTAACCACTACTGGTGGCCGTCGCCAGCAGCCAGAGGGCCACGTCAGCAAGGAGCCCTGA

Coding sequence (CDS)

ATGATGGCTATAGAAGACTATGCTGGTCCAGGGTCTAATCCAAAACACACACCACGGCGACCACCAGTGGTGGCTACAGAAGACTATGATGGTCCAGGGTCTAATCCAAAGCACACGCCACGACCACCGCCAATGGTGGCTACAAAAGACTATGCTGGTCCAGGATCTAATCCAAAGCACACACCGCGGCGACAACCAATGGTGGCTACAGAAGACTATGCTGGTCTAGGATCTAATCCAAAGCACACACCGTGGCGACCACCAATGGTGGCTACAGAAGACTGCTCTAGTCCAGGGTCTAATCCAAAGCACACACTACTGCGACCATCGATGGTGGCTACAGAAGACTATGCTGGTCCAGGGTCTAATCCAAAGCACACACTACTGCGACCATCGATGGTGGCTACAGAAGACTACGCTAGTCCAGGGTCTAATCCGAAACACACACTGCGGCGACCGCTGATGGTGGCTACAGAAGATTATGCTGGTCCAGGGTCTAATCCAAAGCACACACCACGACGACCGCCATTTCAGGTTTTAACCACTACTGGTGGCCGTCGCCAGCAGCCAGAGGGCCACGTCAGCAAGGAGCCCTGA

Protein sequence

MMAIEDYAGPGSNPKHTPRRPPVVATEDYDGPGSNPKHTPRPPPMVATKDYAGPGSNPKHTPRRQPMVATEDYAGLGSNPKHTPWRPPMVATEDCSSPGSNPKHTLLRPSMVATEDYAGPGSNPKHTLLRPSMVATEDYASPGSNPKHTLRRPLMVATEDYAGPGSNPKHTPRRPPFQVLTTTGGRRQQPEGHVSKEP
Homology
BLAST of Moc03g01470 vs. NCBI nr
Match: KAF4369213.1 (hypothetical protein G4B88_009511 [Cannabis sativa] >KAF4387559.1 hypothetical protein F8388_011707 [Cannabis sativa])

HSP 1 Score: 120.2 bits (300), Expect = 2.1e-23
Identity = 74/207 (35.75%), Postives = 105/207 (50.72%), Query Frame = 0

Query: 1   MMAIEDYAGPGSNPKHTPRRPPVVATEDYDGPGSNPKHTPRPPP-----MVATKDYAGPG 60
           M+  E+Y GP SNP  T  + P +  +DY   G NP+H P  PP      ++ +DYA P 
Sbjct: 40  MLIGEEYKGPQSNPSDTHDQLPPLILQDYPSVGPNPRHKPHLPPPANENKLSVQDYADPE 99

Query: 61  SNPKH-TPRRQP----MVATEDYAGLGSNPKHTPWRPPMVATE------DCSSPGSNPKH 120
            NP+H  P +QP     ++ +DYA  GSNP+H    PP++  E      D    G NP+H
Sbjct: 100 PNPRHKLPPQQPTNENKLSIQDYADPGSNPRH-KHPPPLMTNENELILQDYPPVGPNPRH 159

Query: 121 -----TLLRPSMVATEDYAGPGSNPKH-----TLLRPSMVATEDYASPGSNPKHTLRRPL 177
                 L   + ++ +DYA P  NP+H          + ++ +DYA PGSNP+H    PL
Sbjct: 160 KPHHPPLANENKLSVQDYADPEPNPRHKPPPQQPTNENKLSIQDYADPGSNPRHKHPPPL 219

BLAST of Moc03g01470 vs. NCBI nr
Match: XP_030505386.1 (sporozoite surface protein 2-like [Cannabis sativa])

HSP 1 Score: 117.1 bits (292), Expect = 1.7e-22
Identity = 73/208 (35.10%), Postives = 105/208 (50.48%), Query Frame = 0

Query: 1   MMAIEDYAGPGSNPKHTPRRPPVVATEDYDGPGSNPKHTPRPPP-----MVATKDYAGPG 60
           M+  E+Y GP SNP  T  + P +  +DY   G NP+H P  PP      ++ +DYA P 
Sbjct: 1   MLIGEEYKGPQSNPSDTHDQLPPLILQDYPPVGPNPRHKPHLPPPANENKLSVQDYADPE 60

Query: 61  SNPKH-TPRRQP----MVATEDYAGLGSNPKHTPWRPPMVAT-------EDCSSPGSNPK 120
            NP+H  P +QP     ++ +DYA  GSNP+H    PP + T       +D    G NP+
Sbjct: 61  PNPRHKPPPQQPTNENKLSIQDYADPGSNPRHK--HPPPLMTNKNELILQDYPPVGPNPR 120

Query: 121 H-----TLLRPSMVATEDYAGPGSNPKH-----TLLRPSMVATEDYASPGSNPKHTLRRP 177
           H      L   + ++ +DYA P  NP+H          + ++ +DYA PGSNP+H    P
Sbjct: 121 HKPHHPPLANENKLSVQDYADPEPNPRHKPPPQQPTNENKLSIQDYADPGSNPRHKHPPP 180

BLAST of Moc03g01470 vs. NCBI nr
Match: QCD98561.1 (hypothetical protein DEO72_LG6g3283 [Vigna unguiculata])

HSP 1 Score: 114.0 bits (284), Expect = 1.5e-21
Identity = 76/194 (39.18%), Postives = 87/194 (44.85%), Query Frame = 0

Query: 4   IEDYAGPGSNPKHTPRRPPVV----ATEDYDGPGSNPKHTPRPP----PMVATKDYAGPG 63
           ++DY G GSNPKH P  P  +      +DY G  SNPKH P PP          DY G G
Sbjct: 37  VDDYPGTGSNPKHKPPPPRNLNNHYEVDDYPGTRSNPKHKPPPPRDLNDHYEIDDYPGTG 96

Query: 64  SNPKHTP----RRQPMVATEDYAGLGSNPKHTPWRPPMVATEDCSSPGSNPKHTLLRPSM 123
           SNPKH P            +DY G G+NPKH P  PP     D                 
Sbjct: 97  SNPKHKPPPPRDLNNHYEVDDYPGTGANPKHKP--PPSRDLND----------------H 156

Query: 124 VATEDYAGPGSNPKHTLLRP----SMVATEDYASPGSNPKHTLRRPLMV----ATEDYAG 178
              +DY G GSNPKH    P    +    +DYA  GSNPKH    P  +      +DY G
Sbjct: 157 FEVDDYPGTGSNPKHKPPPPRDLNNHYEVDDYAGTGSNPKHKPPPPRDLNDHYEVDDYPG 212

BLAST of Moc03g01470 vs. NCBI nr
Match: KAF4369216.1 (hypothetical protein G4B88_009514 [Cannabis sativa])

HSP 1 Score: 108.2 bits (269), Expect = 8.1e-20
Identity = 76/226 (33.63%), Postives = 109/226 (48.23%), Query Frame = 0

Query: 2   MAIEDYAGPGSNPKHTPRRPPVVAT-------EDYDGPGSNPKHTPRPPPM--------- 61
           ++++DYA P  NP+H P  PP   T       +DY  PGSNP+H   PP M         
Sbjct: 85  LSVQDYADPKPNPRHKP--PPQQPTNENKLSIQDYADPGSNPRHQHPPPLMTNENEHKPH 144

Query: 62  ---------VATKDYAGPGSNPKH-TPRRQP----MVATEDYAGLGSNPKHTPWRPPMVA 121
                    ++ +DYA P  NP+H  P +QP     ++ +DY   GSNP+H    PP++ 
Sbjct: 145 HPPLANENQLSVQDYANPEPNPRHKPPPQQPTNENKLSIQDYVDPGSNPRH-KHPPPLMT 204

Query: 122 TE------DCSSPGSNPKH-----TLLRPSMVATEDYAGPGSNPKH-----TLLRPSMVA 177
            E      D    G NP+H      L   ++++ +DYA P  NPK+          + ++
Sbjct: 205 NENELILQDYPPVGPNPRHKPHHPPLANENILSVQDYADPEPNPKYKPPPQQPTNENKLS 264

BLAST of Moc03g01470 vs. NCBI nr
Match: XP_038895781.1 (circumsporozoite protein-like [Benincasa hispida])

HSP 1 Score: 107.1 bits (266), Expect = 1.8e-19
Identity = 53/125 (42.40%), Postives = 77/125 (61.60%), Query Frame = 0

Query: 2   MAIEDYAGPGSNPKHTPRRPPVVATEDYDGPGSNPKHTPRPPPMVATKDYAGPGSNPKHT 61
           + I DYA PG+NP+H P +PP++   DY  PG+NP+H P   PM+   DY  PG+NP+H 
Sbjct: 35  ITINDYADPGANPRHDPNQPPMM-INDYADPGANPRHDPNQTPMM-INDYTDPGANPRHD 94

Query: 62  PRRQPMVATEDYAGLGSNPKHTPWRPPMVATEDCSSPGSNPKHTLLRPSMVATEDYAGPG 121
           P + PM+         +NP+H P +PPM+   D + P +NP+H   +P M+   DYA  G
Sbjct: 95  PNQPPMMINR------ANPRHDPNQPPMM-INDYTDPRANPRHDPNQPPMM-INDYADAG 149

Query: 122 SNPKH 127
           +NP+H
Sbjct: 155 ANPRH 149

BLAST of Moc03g01470 vs. ExPASy TrEMBL
Match: A0A7J6FET4 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_011707 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.0e-23
Identity = 74/207 (35.75%), Postives = 105/207 (50.72%), Query Frame = 0

Query: 1   MMAIEDYAGPGSNPKHTPRRPPVVATEDYDGPGSNPKHTPRPPP-----MVATKDYAGPG 60
           M+  E+Y GP SNP  T  + P +  +DY   G NP+H P  PP      ++ +DYA P 
Sbjct: 40  MLIGEEYKGPQSNPSDTHDQLPPLILQDYPSVGPNPRHKPHLPPPANENKLSVQDYADPE 99

Query: 61  SNPKH-TPRRQP----MVATEDYAGLGSNPKHTPWRPPMVATE------DCSSPGSNPKH 120
            NP+H  P +QP     ++ +DYA  GSNP+H    PP++  E      D    G NP+H
Sbjct: 100 PNPRHKLPPQQPTNENKLSIQDYADPGSNPRH-KHPPPLMTNENELILQDYPPVGPNPRH 159

Query: 121 -----TLLRPSMVATEDYAGPGSNPKH-----TLLRPSMVATEDYASPGSNPKHTLRRPL 177
                 L   + ++ +DYA P  NP+H          + ++ +DYA PGSNP+H    PL
Sbjct: 160 KPHHPPLANENKLSVQDYADPEPNPRHKPPPQQPTNENKLSIQDYADPGSNPRHKHPPPL 219

BLAST of Moc03g01470 vs. ExPASy TrEMBL
Match: A0A4D6MDP1 (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG6g3283 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 7.2e-22
Identity = 76/194 (39.18%), Postives = 87/194 (44.85%), Query Frame = 0

Query: 4   IEDYAGPGSNPKHTPRRPPVV----ATEDYDGPGSNPKHTPRPP----PMVATKDYAGPG 63
           ++DY G GSNPKH P  P  +      +DY G  SNPKH P PP          DY G G
Sbjct: 37  VDDYPGTGSNPKHKPPPPRNLNNHYEVDDYPGTRSNPKHKPPPPRDLNDHYEIDDYPGTG 96

Query: 64  SNPKHTP----RRQPMVATEDYAGLGSNPKHTPWRPPMVATEDCSSPGSNPKHTLLRPSM 123
           SNPKH P            +DY G G+NPKH P  PP     D                 
Sbjct: 97  SNPKHKPPPPRDLNNHYEVDDYPGTGANPKHKP--PPSRDLND----------------H 156

Query: 124 VATEDYAGPGSNPKHTLLRP----SMVATEDYASPGSNPKHTLRRPLMV----ATEDYAG 178
              +DY G GSNPKH    P    +    +DYA  GSNPKH    P  +      +DY G
Sbjct: 157 FEVDDYPGTGSNPKHKPPPPRDLNNHYEVDDYAGTGSNPKHKPPPPRDLNDHYEVDDYPG 212

BLAST of Moc03g01470 vs. ExPASy TrEMBL
Match: A0A7J6FEU1 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_009514 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 3.9e-20
Identity = 76/226 (33.63%), Postives = 109/226 (48.23%), Query Frame = 0

Query: 2   MAIEDYAGPGSNPKHTPRRPPVVAT-------EDYDGPGSNPKHTPRPPPM--------- 61
           ++++DYA P  NP+H P  PP   T       +DY  PGSNP+H   PP M         
Sbjct: 85  LSVQDYADPKPNPRHKP--PPQQPTNENKLSIQDYADPGSNPRHQHPPPLMTNENEHKPH 144

Query: 62  ---------VATKDYAGPGSNPKH-TPRRQP----MVATEDYAGLGSNPKHTPWRPPMVA 121
                    ++ +DYA P  NP+H  P +QP     ++ +DY   GSNP+H    PP++ 
Sbjct: 145 HPPLANENQLSVQDYANPEPNPRHKPPPQQPTNENKLSIQDYVDPGSNPRH-KHPPPLMT 204

Query: 122 TE------DCSSPGSNPKH-----TLLRPSMVATEDYAGPGSNPKH-----TLLRPSMVA 177
            E      D    G NP+H      L   ++++ +DYA P  NPK+          + ++
Sbjct: 205 NENELILQDYPPVGPNPRHKPHHPPLANENILSVQDYADPEPNPKYKPPPQQPTNENKLS 264

BLAST of Moc03g01470 vs. ExPASy TrEMBL
Match: A0A0E0DTA0 (Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.0e-12
Identity = 46/127 (36.22%), Postives = 60/127 (47.24%), Query Frame = 0

Query: 4   IEDYAGPGSNPKHTPRRPP----------VVATE----DYDGPGSNPKHTPRPPP----- 63
           + DY  PG+NP+H P+RPP           +AT+    DY  PG+NP+H P+ PP     
Sbjct: 59  VNDYPAPGANPRHNPKRPPGREMSVQGMVAMATDVEVNDYPAPGANPRHNPKRPPGREMS 118

Query: 64  ---------MVATKDYAGPGSNPKHTPRRQP--------------MVATEDYAGLGSNPK 89
                     V   DY  PG+NP+H P+R P               V   DY G G+NP+
Sbjct: 119 VLGTVAATTNVEVNDYPAPGANPRHNPKRPPGREMFAQGMAAATTNVEVNDYPGPGANPR 178

BLAST of Moc03g01470 vs. ExPASy TrEMBL
Match: Q75KZ2 (Uncharacterized protein OS=Oryza sativa subsp. japonica OX=39947 GN=OJ1004_E02.10 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 3.9e-12
Identity = 48/128 (37.50%), Postives = 60/128 (46.88%), Query Frame = 0

Query: 4   IEDYAGPGSNPKHTPRRPP---------------VVATEDYDGPGSNPKHTPRPPP---- 63
           + DY  PG+NP+H P+RPP                V   DY  PG+NP+H P+ PP    
Sbjct: 60  VNDYPAPGANPRHNPKRPPGREMSVQGMVAAATNNVEVNDYPAPGANPRHNPKSPPGREM 119

Query: 64  ----MVA------TKDYAGPGSNPKHTPRRQP--------MVA------TEDYAGLGSNP 89
               MVA        DY  PG+NP+H P+R P        MVA        DY   G+NP
Sbjct: 120 SVQGMVAAATDVEVNDYPAPGANPRHNPKRPPGREMSVQGMVAATTDVEVNDYLAPGANP 179

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAF4369213.12.1e-2335.75hypothetical protein G4B88_009511 [Cannabis sativa] >KAF4387559.1 hypothetical p... [more]
XP_030505386.11.7e-2235.10sporozoite surface protein 2-like [Cannabis sativa][more]
QCD98561.11.5e-2139.18hypothetical protein DEO72_LG6g3283 [Vigna unguiculata][more]
KAF4369216.18.1e-2033.63hypothetical protein G4B88_009514 [Cannabis sativa][more]
XP_038895781.11.8e-1942.40circumsporozoite protein-like [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A7J6FET41.0e-2335.75Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_011707 PE=4 SV=1[more]
A0A4D6MDP17.2e-2239.18Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG6g3283 PE=4 SV=1[more]
A0A7J6FEU13.9e-2033.63Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_009514 PE=4 SV=1[more]
A0A0E0DTA01.0e-1236.22Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1[more]
Q75KZ23.9e-1237.50Uncharacterized protein OS=Oryza sativa subsp. japonica OX=39947 GN=OJ1004_E02.1... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 137..198
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..106
NoneNo IPR availablePANTHERPTHR34467TRANSMEMBRANE PROTEINcoord: 151..176

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc03g01470.1Moc03g01470.1mRNA