Moc03g01270 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc03g01270
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Cytokinin dehydrogenase
Location	chr3: 967208 .. 967465 (+)
RNA-Seq Expression	Moc03g01270
Synteny	Moc03g01270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATTCTTTATGAGTCCAGTAAAGATTAACGTGGAGAAATTTGACGGAAGAATCAACTTCAACTTGTGGCAAGTGCAAGTCAAGGATGTGTTGATACAATCTAGGTTACACAAGGCGTTGAAGAGAAGATTGAGTGAAGGTGCCTCTGAAAAGCTAAGCTGTGATGGTGGTCCAGTAGAGTCCAACGGTGGTTCCAGAAGAGGTTCTAAGAAATCCAGCATGAGTGATGAAGATCGAGAGGAGATGCAAGCATGA

mRNA sequence

ATGTCATTCTTTATGAGTCCAGTAAAGATTAACGTGGAGAAATTTGACGGAAGAATCAACTTCAACTTGTGGCAAGTGCAAGTCAAGGATGTGTTGATACAATCTAGGTTACACAAGGCGTTGAAGAGAAGATTGAGTGAAGGTGCCTCTGAAAAGCTAAGCTGTGATGGTGGTCCAGTAGAGTCCAACGGTGGTTCCAGAAGAGGTTCTAAGAAATCCAGCATGAGTGATGAAGATCGAGAGGAGATGCAAGCATGA

Coding sequence (CDS)

ATGTCATTCTTTATGAGTCCAGTAAAGATTAACGTGGAGAAATTTGACGGAAGAATCAACTTCAACTTGTGGCAAGTGCAAGTCAAGGATGTGTTGATACAATCTAGGTTACACAAGGCGTTGAAGAGAAGATTGAGTGAAGGTGCCTCTGAAAAGCTAAGCTGTGATGGTGGTCCAGTAGAGTCCAACGGTGGTTCCAGAAGAGGTTCTAAGAAATCCAGCATGAGTGATGAAGATCGAGAGGAGATGCAAGCATGA

Protein sequence

MSFFMSPVKINVEKFDGRINFNLWQVQVKDVLIQSRLHKALKRRLSEGASEKLSCDGGPVESNGGSRRGSKKSSMSDEDREEMQA

Homology

[Close]

BLAST of Moc03g01270 vs. NCBI nr
Match: XP_022139673.1 (uncharacterized protein LOC111010521 [Momordica charantia])

HSP 1 Score: 131.0 bits (328), Expect = 5.0e-27
Identity = 71/83 (85.54%), Postives = 74/83 (89.16%), Query Frame = 0


Query: 1   MSFFMSPVKINVEKFDGRINFNLWQVQVKDVLIQSRLHKALKRRLSEGASEKLSCDGGPV 60
           MSFFMSPVKI+VEKFDG INF LWQVQVKDVLIQS LHKALK R SEGASEKLS DGGP+
Sbjct: 295 MSFFMSPVKIDVEKFDGMINFGLWQVQVKDVLIQSELHKALKGRPSEGASEKLSDDGGPM 354

Query: 61  ESNGGSRRGSKKSSMSDEDREEM 84
           ES+GGS RGSKKSSMS ED EEM
Sbjct: 355 ESSGGSSRGSKKSSMSYEDWEEM 377

[Close]

BLAST of Moc03g01270 vs. NCBI nr
Match: XP_022154929.1 (uncharacterized protein LOC111022075 [Momordica charantia])

HSP 1 Score: 100.1 bits (248), Expect = 9.5e-18
Identity = 53/69 (76.81%), Postives = 58/69 (84.06%), Query Frame = 0


Query: 1   MSFFMSPVKINVEKFDGRINFNLWQVQVKDVLIQSRLHKALKRRLSEGASEKLSCDGGPV 60
           +SF MSPVKI+VEKFD  INF LWQVQVKDV+IQS LHKALK R SE ASEKLS DGGP+
Sbjct: 145 ISFLMSPVKIDVEKFDEMINFGLWQVQVKDVMIQSGLHKALKGRPSEDASEKLSGDGGPM 204

Query: 61  ESNGGSRRG 70
           ES+ GS RG
Sbjct: 205 ESSDGSDRG 213

[Close]

BLAST of Moc03g01270 vs. NCBI nr
Match: KAF7802225.1 (cytochrome p450 [Senna tora])

HSP 1 Score: 73.9 bits (180), Expect = 7.3e-10
Identity = 38/52 (73.08%), Postives = 42/52 (80.77%), Query Frame = 0


Query: 1  MSFFMSPVKINVEKFDGRINFNLWQVQVKDVLIQSRLHKALKRRLSEGASEK 53
          MS F S VK +VEKFDGRINF LWQVQVKDVLIQS LHKAL+ ++S   SEK
Sbjct: 1  MSKFSSAVKFDVEKFDGRINFGLWQVQVKDVLIQSGLHKALEGKVSSKDSEK 52

[Close]

BLAST of Moc03g01270 vs. NCBI nr
Match: RYR23874.1 (hypothetical protein Ahy_B02g057368 [Arachis hypogaea])

HSP 1 Score: 73.9 bits (180), Expect = 7.3e-10
Identity = 35/47 (74.47%), Postives = 40/47 (85.11%), Query Frame = 0


Query: 1  MSFFMSPVKINVEKFDGRINFNLWQVQVKDVLIQSRLHKALKRRLSE 48
          MS + S VK+ +EKFDGRINF LWQVQVKDVLIQS LHKALK ++SE
Sbjct: 1  MSGYSSAVKLEIEKFDGRINFGLWQVQVKDVLIQSGLHKALKEKISE 47

[Close]

BLAST of Moc03g01270 vs. NCBI nr
Match: RYR58165.1 (hypothetical protein Ahy_A05g023834 [Arachis hypogaea])

HSP 1 Score: 73.9 bits (180), Expect = 7.3e-10
Identity = 35/47 (74.47%), Postives = 40/47 (85.11%), Query Frame = 0


Query: 1  MSFFMSPVKINVEKFDGRINFNLWQVQVKDVLIQSRLHKALKRRLSE 48
          MS + S VK+ +EKFDGRINF LWQVQVKDVLIQS LHKALK ++SE
Sbjct: 1  MSGYSSAVKLEIEKFDGRINFGLWQVQVKDVLIQSGLHKALKEKISE 47

[Close]

BLAST of Moc03g01270 vs. ExPASy TrEMBL
Match: A0A6J1CG82 (uncharacterized protein LOC111010521 OS=Momordica charantia OX=3673 GN=LOC111010521 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.4e-27
Identity = 71/83 (85.54%), Postives = 74/83 (89.16%), Query Frame = 0


Query: 1   MSFFMSPVKINVEKFDGRINFNLWQVQVKDVLIQSRLHKALKRRLSEGASEKLSCDGGPV 60
           MSFFMSPVKI+VEKFDG INF LWQVQVKDVLIQS LHKALK R SEGASEKLS DGGP+
Sbjct: 295 MSFFMSPVKIDVEKFDGMINFGLWQVQVKDVLIQSELHKALKGRPSEGASEKLSDDGGPM 354

Query: 61  ESNGGSRRGSKKSSMSDEDREEM 84
           ES+GGS RGSKKSSMS ED EEM
Sbjct: 355 ESSGGSSRGSKKSSMSYEDWEEM 377

[Close]

BLAST of Moc03g01270 vs. ExPASy TrEMBL
Match: A0A6J1DNQ5 (uncharacterized protein LOC111022075 OS=Momordica charantia OX=3673 GN=LOC111022075 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 4.6e-18
Identity = 53/69 (76.81%), Postives = 58/69 (84.06%), Query Frame = 0


Query: 1   MSFFMSPVKINVEKFDGRINFNLWQVQVKDVLIQSRLHKALKRRLSEGASEKLSCDGGPV 60
           +SF MSPVKI+VEKFD  INF LWQVQVKDV+IQS LHKALK R SE ASEKLS DGGP+
Sbjct: 145 ISFLMSPVKIDVEKFDEMINFGLWQVQVKDVMIQSGLHKALKGRPSEDASEKLSGDGGPM 204

Query: 61  ESNGGSRRG 70
           ES+ GS RG
Sbjct: 205 ESSDGSDRG 213

[Close]

BLAST of Moc03g01270 vs. ExPASy TrEMBL
Match: A0A445D4M9 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A05g023834 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.5e-10
Identity = 35/47 (74.47%), Postives = 40/47 (85.11%), Query Frame = 0


Query: 1  MSFFMSPVKINVEKFDGRINFNLWQVQVKDVLIQSRLHKALKRRLSE 48
          MS + S VK+ +EKFDGRINF LWQVQVKDVLIQS LHKALK ++SE
Sbjct: 1  MSGYSSAVKLEIEKFDGRINFGLWQVQVKDVLIQSGLHKALKEKISE 47

[Close]

BLAST of Moc03g01270 vs. ExPASy TrEMBL
Match: A0A445ABK6 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B02g057368 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.5e-10
Identity = 35/47 (74.47%), Postives = 40/47 (85.11%), Query Frame = 0


Query: 1  MSFFMSPVKINVEKFDGRINFNLWQVQVKDVLIQSRLHKALKRRLSE 48
          MS + S VK+ +EKFDGRINF LWQVQVKDVLIQS LHKALK ++SE
Sbjct: 1  MSGYSSAVKLEIEKFDGRINFGLWQVQVKDVLIQSGLHKALKEKISE 47

[Close]

BLAST of Moc03g01270 vs. ExPASy TrEMBL
Match: A0A445DRA2 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A03g011629 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.6e-10
Identity = 34/47 (72.34%), Postives = 40/47 (85.11%), Query Frame = 0


Query: 1   MSFFMSPVKINVEKFDGRINFNLWQVQVKDVLIQSRLHKALKRRLSE 48
           MS + S VK+ +EKFDGRINF LWQ+QVKDVLIQS LHKALK ++SE
Sbjct: 69  MSGYSSAVKLEIEKFDGRINFGLWQIQVKDVLIQSGLHKALKEKISE 115

The following BLAST results are available for this feature:

BLAST of Moc03g01270 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139673.1	5.0e-27	85.54	uncharacterized protein LOC111010521 [Momordica charantia]	[more]
XP_022154929.1	9.5e-18	76.81	uncharacterized protein LOC111022075 [Momordica charantia]	[more]
KAF7802225.1	7.3e-10	73.08	cytochrome p450 [Senna tora]	[more]
RYR23874.1	7.3e-10	74.47	hypothetical protein Ahy_B02g057368 [Arachis hypogaea]	[more]
RYR58165.1	7.3e-10	74.47	hypothetical protein Ahy_A05g023834 [Arachis hypogaea]	[more]

BLAST of Moc03g01270 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc03g01270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CG82	2.4e-27	85.54	uncharacterized protein LOC111010521 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A6J1DNQ5	4.6e-18	76.81	uncharacterized protein LOC111022075 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A445D4M9	3.5e-10	74.47	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A05g023834 PE=4 SV=1	[more]
A0A445ABK6	3.5e-10	74.47	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B02g057368 PE=4 SV=1	[more]
A0A445DRA2	4.6e-10	72.34	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A03g011629 PE=4 SV=1	[more]

BLAST of Moc03g01270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..85
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..85
None	No IPR available	PANTHER	PTHR34676:SF6	SUBFAMILY NOT NAMED	coord: 5..84
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 5..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc03g01270.1	Moc03g01270.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009690	cytokinin metabolic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0019139	cytokinin dehydrogenase activity
molecular_function	GO:0071949	FAD binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding