Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGATGAAGATTGGGTGGAGACGAATGAACAGGCAGTTGCCTTTATCAGATTATGTTTGTCGATGAATGTGGCAAGTCTCGTAGCAAACGAAACGACAACAATAGATTTGATGAAAGCACTGGAGAATAGGTACGAGAAACCCTCAGCTAATAATAAGGTATATCTCGTAAGGAGGTTCTTTAACATTCAAATGGAAAAGAATACTTCTGTCAATTCCCACATAAATGAGGTCACAAAATTAATCAATCAATTGGCATCAGTTAAGATTACTTTTAGTGACGAAGTGAATGCTATTCAGTTGCTAACATCTTTACCTGAAAGTTGGGAAATGATGAAGACAACAATGTCCAATTTGTTAGGAGACAAATCTTTGAAATTTTCAGAAATTTGTGATGCGGCAATTACTGAAGAAGTTCGCAGAAAGCGAAGTGGAAAAGAATCTACTTTTGTACAAGGTTCAACATTGGCTGTCGAAAAAAGTAAAGAGAAGGTTGCGTCTGATGACAGGCAGCAGAAGCATAGTAGGTGGGATTGGAAGAGAGATGTTGAATGTTTTCACTGCCACAAAAAAGACCACATCAAGAAAAACTGTAGAATGTTAAAAGAGGATCTGAAAAGGTATATGGCGGAGTCAAATGCAGTTGTAGACAATGCCCTCGTCTGTGTTGAAAGCAACACAGAAATAGGAAACCAGTCATCAGAGTGGGTAATAAACAGCGCAGCTTCAGTATACATATCTTCAAATAGAAGATTATTCACATCTTTCAGAAGAGGCAATTGCGGCCACGTGAGGATGGGGAATGGAAAACTTTCCAAGACCAAAGGGATTGGAAATATACGATTGAAGACCAATAGTGAGACTAAGTTATTACTACGAGATGTCAGGTATGTACCCAGTATCAGAATGAACCTTATCTCTACAGGTAAGTTGGACGATGATGGTTATCAAAGTGAGTTTGGTGGGAACCAGTGGAAGCTCACCAAAGGATCCAAGTTGGTGGCAGTTGGCCATAGAAAATCTACAGTTTACACGTCGCAATTGAGTGTTGCCAGAGGATCATTGAAACAGCAGATGCAAGTTGCAGATGGTGTCCAAAGAGGAAGGATTGAACCACCAACAAAGACAACCAGAACAGATCAGGAGAATCTGCCATCAATTCAGGAAGAACAATTGGGAAGTCAAAGAACGATAACATGTTCTTTAGGTTGTCTGGGATTATCTCCAGTTCTCAGACGAATGGGTGAATTGATGAAGTCGCGTTAGCGAACAGTTGCATCAGATAAGATAAACTCAGTAGGTGCTGAGGTAAAGAATGAAGTTTCAATTCTGGCAGCAGGCTTGAATAGTTGTCAAGTCATCAGTGGGAAGTTCTTTCTTCAAGAATCAGTGTTTGAGAACGAAGAAGGAAGCTTCAGATATCGCCACTTAGTTTGAGTGGGAGCACATGGCTGTGTCTCTTGCGTCTGGGAGACAAGACCACGTAGATTGCCCGACCTTAGGGCAAAGACAGATGAGACCAGTGATTTCTGATATTTTGTTTTACAAGTTTTTAAACTTGCAGGAGAAGCCTTGAAGATTTTTTCAAGAAAATCACACGTTGTTGCAGTAGAAGCCTTGGAGTTTTCCAAGATTATCATAGACTGTTGTTACAGTGGGAGGCAAGATCGATGTTTGGTCTCCCAGTGGGAGATTGTTGGGATAATGGAGCCAAAACAGATGATCCGTGTCCTACGAGGAAAAGGATTTTCAAACACTACTATCAATTCCTACAAGGAGTAG
mRNA sequence
ATGAAAGATGAAGATTGGGTGGAGACGAATGAACAGGCAGTTGCCTTTATCAGATTATGTTTGTCGATGAATGTGGCAAGTCTCGTAGCAAACGAAACGACAACAATAGATTTGATGAAAGCACTGGAGAATAGGTACGAGAAACCCTCAGCTAATAATAAGGTATATCTCGTAAGGAGGTTCTTTAACATTCAAATGGAAAAGAATACTTCTGTCAATTCCCACATAAATGAGGTCACAAAATTAATCAATCAATTGGCATCAGTTAAGATTACTTTTAGTGACGAAGTGAATGCTATTCAGTTGCTAACATCTTTACCTGAAAGTTGGGAAATGATGAAGACAACAATGTCCAATTTGTTAGGAGACAAATCTTTGAAATTTTCAGAAATTTGTGATGCGGCAATTACTGAAGAAGTTCGCAGAAAGCGAAGTGGAAAAGAATCTACTTTTGTACAAGGTTCAACATTGGCTGTCGAAAAAAGTAAAGAGAAGGTTGCGTCTGATGACAGGCAGCAGAAGCATAGTAGGTGGGATTGGAAGAGAGATGTTGAATGTTTTCACTGCCACAAAAAAGACCACATCAAGAAAAACTGTAGAATGTTAAAAGAGGATCTGAAAAGGTATATGGCGGAGTCAAATGCAGTTGTAGACAATGCCCTCGTCTGTGTTGAAAGCAACACAGAAATAGGAAACCAGTCATCAGAGTGGGTAATAAACAGCGCAGCTTCAGTATACATATCTTCAAATAGAAGATTATTCACATCTTTCAGAAGAGGCAATTGCGGCCACGTGAGGATGGGGAATGGAAAACTTTCCAAGACCAAAGGGATTGGAAATATACGATTGAAGACCAATAGTGAGACTAAGTTATTACTACGAGATGTCAGGTATGTACCCAGTATCAGAATGAACCTTATCTCTACAGGTAAGTTGGACGATGATGGTTATCAAAGTGAGTTTGGTGGGAACCAGTGGAAGCTCACCAAAGGATCCAAGTTGGTGGCAGTTGGCCATAGAAAATCTACAGTTTACACGTCGCAATTGAGTGTTGCCAGAGGATCATTGAAACAGCAGATGCAAGTTGCAGATGGTGTCCAAAGAGGAAGGATTGAACCACCAACAAAGACAACCAGAACAGATCAGGAGAATCTGCCATCAATTCAGGAAGAACAATTGGGAAGTCAAAGAACGATAACATGTTCTTTAGGTTGTCTGGGATTATCTCCAGTTCTCAGACGAATGGGTGAATTGATGAAGTCGCGAGAAGCCTTGAAGATTTTTTCAAGAAAATCACACGTTGTTGCAGTAGAAGCCTTGGAGTTTTCCAAGATTATCATAGACTGTTGTTACAGTGGGAGGCAAGATCGATGTTTGGTCTCCCAGTGGGAGATTGTTGGGATAATGGAGCCAAAACAGATGATCCGTGTCCTACGAGGAAAAGGATTTTCAAACACTACTATCAATTCCTACAAGGAGTAG
Coding sequence (CDS)
ATGAAAGATGAAGATTGGGTGGAGACGAATGAACAGGCAGTTGCCTTTATCAGATTATGTTTGTCGATGAATGTGGCAAGTCTCGTAGCAAACGAAACGACAACAATAGATTTGATGAAAGCACTGGAGAATAGGTACGAGAAACCCTCAGCTAATAATAAGGTATATCTCGTAAGGAGGTTCTTTAACATTCAAATGGAAAAGAATACTTCTGTCAATTCCCACATAAATGAGGTCACAAAATTAATCAATCAATTGGCATCAGTTAAGATTACTTTTAGTGACGAAGTGAATGCTATTCAGTTGCTAACATCTTTACCTGAAAGTTGGGAAATGATGAAGACAACAATGTCCAATTTGTTAGGAGACAAATCTTTGAAATTTTCAGAAATTTGTGATGCGGCAATTACTGAAGAAGTTCGCAGAAAGCGAAGTGGAAAAGAATCTACTTTTGTACAAGGTTCAACATTGGCTGTCGAAAAAAGTAAAGAGAAGGTTGCGTCTGATGACAGGCAGCAGAAGCATAGTAGGTGGGATTGGAAGAGAGATGTTGAATGTTTTCACTGCCACAAAAAAGACCACATCAAGAAAAACTGTAGAATGTTAAAAGAGGATCTGAAAAGGTATATGGCGGAGTCAAATGCAGTTGTAGACAATGCCCTCGTCTGTGTTGAAAGCAACACAGAAATAGGAAACCAGTCATCAGAGTGGGTAATAAACAGCGCAGCTTCAGTATACATATCTTCAAATAGAAGATTATTCACATCTTTCAGAAGAGGCAATTGCGGCCACGTGAGGATGGGGAATGGAAAACTTTCCAAGACCAAAGGGATTGGAAATATACGATTGAAGACCAATAGTGAGACTAAGTTATTACTACGAGATGTCAGGTATGTACCCAGTATCAGAATGAACCTTATCTCTACAGGTAAGTTGGACGATGATGGTTATCAAAGTGAGTTTGGTGGGAACCAGTGGAAGCTCACCAAAGGATCCAAGTTGGTGGCAGTTGGCCATAGAAAATCTACAGTTTACACGTCGCAATTGAGTGTTGCCAGAGGATCATTGAAACAGCAGATGCAAGTTGCAGATGGTGTCCAAAGAGGAAGGATTGAACCACCAACAAAGACAACCAGAACAGATCAGGAGAATCTGCCATCAATTCAGGAAGAACAATTGGGAAGTCAAAGAACGATAACATGTTCTTTAGGTTGTCTGGGATTATCTCCAGTTCTCAGACGAATGGGTGAATTGATGAAGTCGCGAGAAGCCTTGAAGATTTTTTCAAGAAAATCACACGTTGTTGCAGTAGAAGCCTTGGAGTTTTCCAAGATTATCATAGACTGTTGTTACAGTGGGAGGCAAGATCGATGTTTGGTCTCCCAGTGGGAGATTGTTGGGATAATGGAGCCAAAACAGATGATCCGTGTCCTACGAGGAAAAGGATTTTCAAACACTACTATCAATTCCTACAAGGAGTAG
Protein sequence
MKDEDWVETNEQAVAFIRLCLSMNVASLVANETTTIDLMKALENRYEKPSANNKVYLVRRFFNIQMEKNTSVNSHINEVTKLINQLASVKITFSDEVNAIQLLTSLPESWEMMKTTMSNLLGDKSLKFSEICDAAITEEVRRKRSGKESTFVQGSTLAVEKSKEKVASDDRQQKHSRWDWKRDVECFHCHKKDHIKKNCRMLKEDLKRYMAESNAVVDNALVCVESNTEIGNQSSEWVINSAASVYISSNRRLFTSFRRGNCGHVRMGNGKLSKTKGIGNIRLKTNSETKLLLRDVRYVPSIRMNLISTGKLDDDGYQSEFGGNQWKLTKGSKLVAVGHRKSTVYTSQLSVARGSLKQQMQVADGVQRGRIEPPTKTTRTDQENLPSIQEEQLGSQRTITCSLGCLGLSPVLRRMGELMKSREALKIFSRKSHVVAVEALEFSKIIIDCCYSGRQDRCLVSQWEIVGIMEPKQMIRVLRGKGFSNTTINSYKE
Homology
BLAST of Moc03g01120 vs. NCBI nr
Match:
RVW84195.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])
HSP 1 Score: 263.8 bits (673), Expect = 2.9e-66
Identity = 146/368 (39.67%), Postives = 229/368 (62.23%), Query Frame = 0
Query: 1 MKDEDWVETNEQAVAFIRLCLSMNVASLVANETTTIDLMKALENRYEKPSANNKVYLVRR 60
MKD++W + + +AV FIR + +V V+ E + L LE+ Y++ +A NK +L R+
Sbjct: 24 MKDDEWKKLDRKAVGFIRQWIGDSVFHHVSTENSAHGLWTKLESLYDRKTAVNKAFLFRK 83
Query: 61 FFNIQMEKNTSVNSHINEVTKLINQLASVKITFSDEVNAIQLLTSLPESWEMMKTTMSNL 120
N + ++ T + H+NE+ ++NQLA++KITF DE+ A+ LL+SLPESWE + T+SN
Sbjct: 84 LVNSKYKEGTPIAEHLNEIKSIVNQLAAMKITFDDELQALLLLSSLPESWETLVVTVSNS 143
Query: 121 LGDKSLKFSEICDAAITEEVRRKRSGKESTFVQGSTLAVE-----KSKEKVASD-DRQQK 180
D + S++ + + EE RRK SG L +E +SK K + + D+ +
Sbjct: 144 TPDGVVTMSQVTSSLLNEETRRKSSGSS----HSEALVIENRGRGRSKSKASHNRDKSRG 203
Query: 181 HSRWDWKRDVECFHCHKKDHIKKNCRMLK-------EDLKRYMAESNAVVDNALVCVESN 240
S K+DVEC++CHKK H+K+ CR LK ++ ++ ++ V D L+ + +
Sbjct: 204 RSSSISKKDVECYYCHKKGHMKRECRKLKFKEQNKEKNSEKKQNDTAVVTDGELMIIRDD 263
Query: 241 TEIG--NQSSEWVINSAASVYISSNRRLFTSFRRGNCGHVRMGNGKLSKTKGIGNIRLKT 300
+ Q ++WVI+S AS +++S FTS+ +G+ G+VRMGN +SK G+G+I L+T
Sbjct: 264 VSVNLIGQETDWVIDSGASFHVTSRADFFTSYSQGDFGNVRMGNEDVSKIVGMGDICLET 323
Query: 301 NSETKLLLRDVRYVPSIRMNLISTGKLDDDGYQSEFGGNQWKLTKGSKLVAVGHRKSTVY 354
N+ KLLLRDVR+VP IR+NLISTGKLDD+GY + F +WKL+KGS +VA G + ++Y
Sbjct: 324 NTGCKLLLRDVRHVPDIRLNLISTGKLDDEGYNNNFSDGKWKLSKGSLVVAKGKKTCSLY 383
BLAST of Moc03g01120 vs. NCBI nr
Match:
RVW14266.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])
HSP 1 Score: 263.8 bits (673), Expect = 2.9e-66
Identity = 146/368 (39.67%), Postives = 229/368 (62.23%), Query Frame = 0
Query: 1 MKDEDWVETNEQAVAFIRLCLSMNVASLVANETTTIDLMKALENRYEKPSANNKVYLVRR 60
MKD++W + + +AV FIR + +V V+ E + L LE+ Y++ +A NK +L R+
Sbjct: 260 MKDDEWKKLDRKAVGFIRQWIDDSVFHHVSTENSAHGLWTKLESLYDRKTAVNKAFLFRK 319
Query: 61 FFNIQMEKNTSVNSHINEVTKLINQLASVKITFSDEVNAIQLLTSLPESWEMMKTTMSNL 120
N + ++ T + H+NE+ ++NQLA++KITF DE+ A+ LL+SLPESWE + T+SN
Sbjct: 320 LVNSKYKEGTPIAEHLNEIKSIVNQLAAMKITFDDELQALLLLSSLPESWETLVVTVSNS 379
Query: 121 LGDKSLKFSEICDAAITEEVRRKRSGKESTFVQGSTLAVE-----KSKEKVASD-DRQQK 180
D + S++ + + EE RRK SG L +E +SK K + + D+ +
Sbjct: 380 TPDGVVTMSQVTSSLLNEETRRKSSGSS----HSEALVIENRGRGRSKSKASHNRDKSRG 439
Query: 181 HSRWDWKRDVECFHCHKKDHIKKNCRMLK-------EDLKRYMAESNAVVDNALVCVESN 240
S K+DVEC++CHKK H+K+ CR LK ++ ++ ++ V D L+ + +
Sbjct: 440 RSSSISKKDVECYYCHKKGHMKRECRKLKFKEQNKEKNSEKKQNDTAVVTDGELMIIRDD 499
Query: 241 TEIG--NQSSEWVINSAASVYISSNRRLFTSFRRGNCGHVRMGNGKLSKTKGIGNIRLKT 300
+ Q ++WVI+S AS +++S FTS+ +G+ G+VRMGN +SK G+G+I L+T
Sbjct: 500 VSVNLIGQETDWVIDSGASFHVTSRADFFTSYSQGDFGNVRMGNEDVSKIVGMGDICLET 559
Query: 301 NSETKLLLRDVRYVPSIRMNLISTGKLDDDGYQSEFGGNQWKLTKGSKLVAVGHRKSTVY 354
N+ KLLLRDVR+VP IR+NLISTGKLDD+GY + F +WKL+KGS +VA G + ++Y
Sbjct: 560 NTGCKLLLRDVRHVPDIRLNLISTGKLDDEGYNNNFSDGKWKLSKGSLVVAKGKKTCSLY 619
BLAST of Moc03g01120 vs. NCBI nr
Match:
KAF7121453.1 (hypothetical protein RHSIM_Rhsim13G0116100 [Rhododendron simsii])
HSP 1 Score: 261.2 bits (666), Expect = 1.9e-65
Identity = 150/372 (40.32%), Postives = 223/372 (59.95%), Query Frame = 0
Query: 3 DEDWVETNEQAVAFIRLCLSMNVASLVANETTTIDLMKALENRYEKPSANNKVYLVRRFF 62
DEDW TN +AVA IR + +V VA ET +L LE YE+ +A NK L+RR
Sbjct: 26 DEDWKVTNRKAVALIRTWVDQSVFHHVAQETNAYELWTKLEAMYERKTAQNKASLIRRLV 85
Query: 63 NIQMEKNTSVNSHINEVTKLINQLASVKITFSDEVNAIQLLTSLPESWEMMKTTMSNLLG 122
N++ + SV H+++ LINQL+++K+ +E+ A+ LL+SLP+SWE + T+SN
Sbjct: 86 NLKYKDGRSVAEHMSDFQGLINQLSTMKLVLDEELQALLLLSSLPDSWETLVVTISNSAP 145
Query: 123 DKSLKFSEICDAAITEEVRRKRSG----KESTFVQ--GSTLAVEKSKEKVASDDRQQKHS 182
+ + D EE RRK G E+ VQ G + ++ S DR + S
Sbjct: 146 SGMVTMDMVKDGMFNEEARRKEQGTSVDTEALVVQNRGRSRTRNSGGDRNKSKDRSRSKS 205
Query: 183 RWDWK--RDVECFHCHKKDHIKKNCRMLKEDLKR-YMAESNAVVDNA---------LVCV 242
R K ++ECFHCHK H++K CR+L+++LK+ + ES+ D +VC
Sbjct: 206 RGTSKPRSEIECFHCHKMGHMRKECRILQKELKKGKVVESSGKKDTTAVASDGEVIIVCD 265
Query: 243 ESNTEIGNQSSEWVINSAASVYISSNRRLFTSFRRGNCGHVRMGNGKLSKTKGIGNIRLK 302
+ + Q WVI+S AS +++S R F S+ G+ GHVRMGN +SK G+G++ L+
Sbjct: 266 DGFVGLTGQDLSWVIDSGASFHVTSQRDFFASYTHGDFGHVRMGNEGVSKIVGMGDVCLE 325
Query: 303 TNSETKLLLRDVRYVPSIRMNLISTGKLDDDGYQSEFGGNQWKLTKGSKLVAVGHRKSTV 357
TN+ KLLL+DVR+VP IR+NLIS GKLDD+GY+++FG +WKL+KGS +VA G + ST+
Sbjct: 326 TNTGCKLLLKDVRHVPDIRLNLISAGKLDDEGYKNQFGDGKWKLSKGSLVVARGKKSSTL 385
BLAST of Moc03g01120 vs. NCBI nr
Match:
KAF7129225.1 (hypothetical protein RHSIM_Rhsim10G0050800 [Rhododendron simsii])
HSP 1 Score: 260.0 bits (663), Expect = 4.1e-65
Identity = 149/372 (40.05%), Postives = 224/372 (60.22%), Query Frame = 0
Query: 3 DEDWVETNEQAVAFIRLCLSMNVASLVANETTTIDLMKALENRYEKPSANNKVYLVRRFF 62
DEDW TN +AVA IR + +V VA ET +L LE YE+ +A NK L+RR
Sbjct: 48 DEDWKVTNRKAVALIRTWVDQSVFHHVAQETNAYELWTKLEAMYERKTAQNKASLIRRLV 107
Query: 63 NIQMEKNTSVNSHINEVTKLINQLASVKITFSDEVNAIQLLTSLPESWEMMKTTMSNLLG 122
N++ + SV H+++ LINQL+++K+ +E+ A+ LL+SLP+SWE + T+SN
Sbjct: 108 NLKYKDGRSVAEHMSDFQGLINQLSTMKLVLDEELQALLLLSSLPDSWETLVVTISNSAP 167
Query: 123 DKSLKFSEICDAAITEEVRRKRSG----KESTFVQ--GSTLAVEKSKEKVASDDRQQKHS 182
+ + D EE RRK G E+ VQ G + ++ S DR + S
Sbjct: 168 SGMVTMDMVKDGMFNEEARRKEQGTSVDTEALVVQNRGRSRIRNSGGDRNKSKDRSRSKS 227
Query: 183 RWDWK--RDVECFHCHKKDHIKKNCRMLKEDLKRYMA-------ESNAVVDNA---LVCV 242
R K ++ECFHCHK H++K CR+L+++LK+ ++ AV + +VC
Sbjct: 228 RGTSKPRSEIECFHCHKMGHMRKECRILQKELKKGKGAEISGKKDTTAVASDGEVIIVCD 287
Query: 243 ESNTEIGNQSSEWVINSAASVYISSNRRLFTSFRRGNCGHVRMGNGKLSKTKGIGNIRLK 302
+ + Q WVI+S AS +++S R F S+ G+ GHVRMGN +SK G+G++ L+
Sbjct: 288 DGFVGLTGQDLSWVIDSGASFHVTSQRDFFASYTHGDFGHVRMGNEGVSKIVGMGDVCLE 347
Query: 303 TNSETKLLLRDVRYVPSIRMNLISTGKLDDDGYQSEFGGNQWKLTKGSKLVAVGHRKSTV 357
TN+ KLLL+DVR+VP+IR+NLIS GKLDD+GY+++FG +WKL+KGS +VA G + ST+
Sbjct: 348 TNTGCKLLLKDVRHVPNIRLNLISAGKLDDEGYKNQFGDGKWKLSKGSLVVARGKKSSTL 407
BLAST of Moc03g01120 vs. NCBI nr
Match:
KAF7129546.1 (hypothetical protein RHSIM_Rhsim10G0154200 [Rhododendron simsii])
HSP 1 Score: 259.2 bits (661), Expect = 7.1e-65
Identity = 148/375 (39.47%), Postives = 224/375 (59.73%), Query Frame = 0
Query: 3 DEDWVETNEQAVAFIRLCLSMNVASLVANETTTIDLMKALENRYEKPSANNKVYLVRRFF 62
DEDW TN +AVA IR + +V VA ET +L LE YE+ +A NK L+RR
Sbjct: 48 DEDWKVTNRKAVALIRTWVDQSVFHHVAQETNAYELWTKLEAMYERKTAQNKASLIRRLV 107
Query: 63 NIQMEKNTSVNSHINEVTKLINQLASVKITFSDEVNAIQLLTSLPESWEMMKTTMSNLLG 122
N++ + SV H+++ LINQL+++K+ +E+ A+ LL+SLP+SWE + T+SN
Sbjct: 108 NLKYKDGRSVAEHMSDFQGLINQLSTMKLVLDEELQALLLLSSLPDSWETLVVTISNSAP 167
Query: 123 DKSLKFSEICDAAITEEVRRKRSGKESTFVQGSTLAVE---KSKEKVASDDRQQKHSRWD 182
+ + D EE RRK G T V L V+ +S+ + + DR + R
Sbjct: 168 SGMVTMDMVKDGMFNEEARRKEQG---TSVDTEALVVQNRGRSRIRNSGGDRNKFKDRSK 227
Query: 183 WK--------RDVECFHCHKKDHIKKNCRMLKEDLKRYMA-------ESNAVVDNA---L 242
K ++ECFHCHK H++K CR+L+++LK+ ++ AV + +
Sbjct: 228 SKSTGTSKPRSEIECFHCHKMGHVRKECRILQKELKKGKGAEISGKKDTTAVASDGEVII 287
Query: 243 VCVESNTEIGNQSSEWVINSAASVYISSNRRLFTSFRRGNCGHVRMGNGKLSKTKGIGNI 302
VC + + Q WVI+S AS +++S R F S+ G+ GHVRMGN +SK G+G++
Sbjct: 288 VCDDGFVGLTGQDLSWVIDSGASFHVTSQRDFFASYTHGDFGHVRMGNEGVSKIVGMGDV 347
Query: 303 RLKTNSETKLLLRDVRYVPSIRMNLISTGKLDDDGYQSEFGGNQWKLTKGSKLVAVGHRK 357
L+TN+ KLLL+DVR+VP IR+NLIS GKLDD+GY+++FG +WKL+KGS +VA G +
Sbjct: 348 CLETNTGCKLLLKDVRHVPDIRLNLISAGKLDDEGYKNQFGDGKWKLSKGSLIVARGKKS 407
BLAST of Moc03g01120 vs. ExPASy Swiss-Prot
Match:
P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)
HSP 1 Score: 190.7 bits (483), Expect = 4.1e-47
Identity = 121/369 (32.79%), Postives = 199/369 (53.93%), Query Frame = 0
Query: 1 MKDEDWVETNEQAVAFIRLCLSMNVASLVANETTTIDLMKALENRYEKPSANNKVYLVRR 60
MK EDW + +E+A + IRL LS +V + + +E T + LE+ Y + NK+YL ++
Sbjct: 47 MKAEDWADLDERAASAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQ 106
Query: 61 FFNIQMEKNTSVNSHINEVTKLINQLASVKITFSDEVNAIQLLTSLPESWEMMKTTMSNL 120
+ + M + T+ SH+N LI QLA++ + +E AI LL SLP S++ + TT+ L
Sbjct: 107 LYALHMSEGTNFLSHLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTI--L 166
Query: 121 LGDKSLKFSEICDAAITEEVRRKR--SGKESTFVQGSTLAVEKSKEKVASDDRQQKHSRW 180
G +++ ++ A + E RK+ + ++ +G + ++S + K
Sbjct: 167 HGKTTIELKDVTSALLLNEKMRKKPENQGQALITEGRGRSYQRSSNNYGRSGARGKSKNR 226
Query: 181 DWKRDVECFHCHKKDHIKKNC---RMLKEDLKRYMAESNAVV-----DNALVCVESNTE- 240
R C++C++ H K++C R K + + N DN ++ + E
Sbjct: 227 SKSRVRNCYNCNQPGHFKRDCPNPRKGKGETSGQKNDDNTAAMVQNNDNVVLFINEEEEC 286
Query: 241 --IGNQSSEWVINSAASVYISSNRRLFTSFRRGNCGHVRMGNGKLSKTKGIGNIRLKTNS 300
+ SEWV+++AAS + + R LF + G+ G V+MGN SK GIG+I +KTN
Sbjct: 287 MHLSGPESEWVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNV 346
Query: 301 ETKLLLRDVRYVPSIRMNLISTGKLDDDGYQSEFGGNQWKLTKGSKLVAVGHRKSTVYTS 357
L+L+DVR+VP +RMNLIS LD DGY+S F +W+LTKGS ++A G + T+Y +
Sbjct: 347 GCTLVLKDVRHVPDLRMNLISGIALDRDGYESYFANQKWRLTKGSLVIAKGVARGTLYRT 406
BLAST of Moc03g01120 vs. ExPASy TrEMBL
Match:
A0A438BTH6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_4171 PE=4 SV=1)
HSP 1 Score: 263.8 bits (673), Expect = 1.4e-66
Identity = 146/368 (39.67%), Postives = 229/368 (62.23%), Query Frame = 0
Query: 1 MKDEDWVETNEQAVAFIRLCLSMNVASLVANETTTIDLMKALENRYEKPSANNKVYLVRR 60
MKD++W + + +AV FIR + +V V+ E + L LE+ Y++ +A NK +L R+
Sbjct: 260 MKDDEWKKLDRKAVGFIRQWIDDSVFHHVSTENSAHGLWTKLESLYDRKTAVNKAFLFRK 319
Query: 61 FFNIQMEKNTSVNSHINEVTKLINQLASVKITFSDEVNAIQLLTSLPESWEMMKTTMSNL 120
N + ++ T + H+NE+ ++NQLA++KITF DE+ A+ LL+SLPESWE + T+SN
Sbjct: 320 LVNSKYKEGTPIAEHLNEIKSIVNQLAAMKITFDDELQALLLLSSLPESWETLVVTVSNS 379
Query: 121 LGDKSLKFSEICDAAITEEVRRKRSGKESTFVQGSTLAVE-----KSKEKVASD-DRQQK 180
D + S++ + + EE RRK SG L +E +SK K + + D+ +
Sbjct: 380 TPDGVVTMSQVTSSLLNEETRRKSSGSS----HSEALVIENRGRGRSKSKASHNRDKSRG 439
Query: 181 HSRWDWKRDVECFHCHKKDHIKKNCRMLK-------EDLKRYMAESNAVVDNALVCVESN 240
S K+DVEC++CHKK H+K+ CR LK ++ ++ ++ V D L+ + +
Sbjct: 440 RSSSISKKDVECYYCHKKGHMKRECRKLKFKEQNKEKNSEKKQNDTAVVTDGELMIIRDD 499
Query: 241 TEIG--NQSSEWVINSAASVYISSNRRLFTSFRRGNCGHVRMGNGKLSKTKGIGNIRLKT 300
+ Q ++WVI+S AS +++S FTS+ +G+ G+VRMGN +SK G+G+I L+T
Sbjct: 500 VSVNLIGQETDWVIDSGASFHVTSRADFFTSYSQGDFGNVRMGNEDVSKIVGMGDICLET 559
Query: 301 NSETKLLLRDVRYVPSIRMNLISTGKLDDDGYQSEFGGNQWKLTKGSKLVAVGHRKSTVY 354
N+ KLLLRDVR+VP IR+NLISTGKLDD+GY + F +WKL+KGS +VA G + ++Y
Sbjct: 560 NTGCKLLLRDVRHVPDIRLNLISTGKLDDEGYNNNFSDGKWKLSKGSLVVAKGKKTCSLY 619
BLAST of Moc03g01120 vs. ExPASy TrEMBL
Match:
A0A438HI91 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1199 PE=4 SV=1)
HSP 1 Score: 263.8 bits (673), Expect = 1.4e-66
Identity = 146/368 (39.67%), Postives = 229/368 (62.23%), Query Frame = 0
Query: 1 MKDEDWVETNEQAVAFIRLCLSMNVASLVANETTTIDLMKALENRYEKPSANNKVYLVRR 60
MKD++W + + +AV FIR + +V V+ E + L LE+ Y++ +A NK +L R+
Sbjct: 24 MKDDEWKKLDRKAVGFIRQWIGDSVFHHVSTENSAHGLWTKLESLYDRKTAVNKAFLFRK 83
Query: 61 FFNIQMEKNTSVNSHINEVTKLINQLASVKITFSDEVNAIQLLTSLPESWEMMKTTMSNL 120
N + ++ T + H+NE+ ++NQLA++KITF DE+ A+ LL+SLPESWE + T+SN
Sbjct: 84 LVNSKYKEGTPIAEHLNEIKSIVNQLAAMKITFDDELQALLLLSSLPESWETLVVTVSNS 143
Query: 121 LGDKSLKFSEICDAAITEEVRRKRSGKESTFVQGSTLAVE-----KSKEKVASD-DRQQK 180
D + S++ + + EE RRK SG L +E +SK K + + D+ +
Sbjct: 144 TPDGVVTMSQVTSSLLNEETRRKSSGSS----HSEALVIENRGRGRSKSKASHNRDKSRG 203
Query: 181 HSRWDWKRDVECFHCHKKDHIKKNCRMLK-------EDLKRYMAESNAVVDNALVCVESN 240
S K+DVEC++CHKK H+K+ CR LK ++ ++ ++ V D L+ + +
Sbjct: 204 RSSSISKKDVECYYCHKKGHMKRECRKLKFKEQNKEKNSEKKQNDTAVVTDGELMIIRDD 263
Query: 241 TEIG--NQSSEWVINSAASVYISSNRRLFTSFRRGNCGHVRMGNGKLSKTKGIGNIRLKT 300
+ Q ++WVI+S AS +++S FTS+ +G+ G+VRMGN +SK G+G+I L+T
Sbjct: 264 VSVNLIGQETDWVIDSGASFHVTSRADFFTSYSQGDFGNVRMGNEDVSKIVGMGDICLET 323
Query: 301 NSETKLLLRDVRYVPSIRMNLISTGKLDDDGYQSEFGGNQWKLTKGSKLVAVGHRKSTVY 354
N+ KLLLRDVR+VP IR+NLISTGKLDD+GY + F +WKL+KGS +VA G + ++Y
Sbjct: 324 NTGCKLLLRDVRHVPDIRLNLISTGKLDDEGYNNNFSDGKWKLSKGSLVVAKGKKTCSLY 383
BLAST of Moc03g01120 vs. ExPASy TrEMBL
Match:
A0A438IBT7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_788 PE=4 SV=1)
HSP 1 Score: 240.0 bits (611), Expect = 2.2e-59
Identity = 139/368 (37.77%), Postives = 214/368 (58.15%), Query Frame = 0
Query: 1 MKDEDWVETNEQAVAFIRLCLSMNVASLVANETTTIDLMKALENRYEKPSANNKVYLVRR 60
MKD++W + + +AV FIR +A NK +L R+
Sbjct: 24 MKDDEWKKLDRKAVGFIR------------------------------KTAVNKAFLFRK 83
Query: 61 FFNIQMEKNTSVNSHINEVTKLINQLASVKITFSDEVNAIQLLTSLPESWEMMKTTMSNL 120
N + ++ T + H+NE+ ++NQLA++KITF DE+ A+ LL+SLPESWE + T+SN
Sbjct: 84 LVNSKYKEGTPIAEHLNEIKSIVNQLAAMKITFDDELQALLLLSSLPESWETLVVTVSNS 143
Query: 121 LGDKSLKFSEICDAAITEEVRRKRSGKESTFVQGSTLAVE-----KSKEKVASD-DRQQK 180
D + S++ + + EE RRK SG L +E KSK K + + D+ +
Sbjct: 144 TPDGVVTMSQVTSSLLNEETRRKSSGSS----HSEALVIENRERGKSKSKASHNRDKSRG 203
Query: 181 HSRWDWKRDVECFHCHKKDHIKKNCRMLK-------EDLKRYMAESNAVVDNALVCVESN 240
S K+DVEC++CHKK H+K+ CR LK ++ ++ ++ V D L+ + +
Sbjct: 204 RSSSISKKDVECYYCHKKGHMKRECRKLKFKEQNKEKNSEKKQNDTAVVTDGELMIIRDD 263
Query: 241 TEIG--NQSSEWVINSAASVYISSNRRLFTSFRRGNCGHVRMGNGKLSKTKGIGNIRLKT 300
+ Q ++WVI+S AS +++S FTS+ +G+ G+VRMGN +SK G+G+I L+T
Sbjct: 264 VSVNLIGQETDWVIDSGASFHVTSRADFFTSYSQGDFGNVRMGNEDVSKIFGMGDICLET 323
Query: 301 NSETKLLLRDVRYVPSIRMNLISTGKLDDDGYQSEFGGNQWKLTKGSKLVAVGHRKSTVY 354
N+ KLLLRDVR+VP IR+NLIS GKLDD+GY + F +WKL+KGS +VA G + ++Y
Sbjct: 324 NTGCKLLLRDVRHVPDIRLNLISAGKLDDEGYNNNFSDGKWKLSKGSLVVAKGKKTCSLY 357
BLAST of Moc03g01120 vs. ExPASy TrEMBL
Match:
A0A6A3BGE7 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110195pilonHSYRG00090 PE=4 SV=1)
HSP 1 Score: 238.8 bits (608), Expect = 4.8e-59
Identity = 133/349 (38.11%), Postives = 211/349 (60.46%), Query Frame = 0
Query: 1 MKDEDWVETNEQAVAFIRLCLSMNVASLVANETTTIDLMKALENRYEKPSANNKVYLVRR 60
MKDEDW + QA+ IRL LS NVA +A E TT LM AL + YEKPSA+NKV+L+RR
Sbjct: 46 MKDEDWALLDRQALGVIRLTLSRNVAFNIAKEKTTAGLMAALSSMYEKPSASNKVHLMRR 105
Query: 61 FFNIQMEKNTSVNSHINEVTKLINQLASVKITFSDEVNAIQLLTSLPESWEMMKTTMSNL 120
FN++M + SV H+NE+ + QL+SV+I F DEV A+ LL+SLP+SW T +S+
Sbjct: 106 LFNLRMTEGASVAQHLNELNTITTQLSSVEIEFDDEVRALILLSSLPDSWNATVTAVSSS 165
Query: 121 LGDKSLKFSEICDAAITEEVRRKRSGKESTFVQGSTLAVEKSKEKVASDDR--QQKHSRW 180
G+ LKF ++ D ++EE+RR+ SG+ ST T + ++ E+ ++ R ++
Sbjct: 166 SGNIKLKFDDVRDLVLSEEIRRRESGEASTSSALHTESRGRTSERYSNRGRSKSRREKSR 225
Query: 181 DWKRDVECFHCHKKDHIKKNCRMLKEDLKRYMAESNAVVDNALVCVESNTEIGNQSSEWV 240
K+D C++C KK H K++CR LK+D + + + + N+ I W+
Sbjct: 226 TGKKDFTCYNCGKKGHFKRDCRALKKDTGAQESANVTEETGDAMILSVNSPI----ESWI 285
Query: 241 INSAASVYISSNRRLFTSFRRGNCGHVRMGNGKLSKTKGIGNIRLKTNSETKLLLRDVRY 300
++S AS + + + + ++ G+ G V + + + K G G+IRLK ++T L VR+
Sbjct: 286 LDSGASFHSTPCQEIMENYVSGDFGKVHLADDETLKIVGKGDIRLKLPNQTTWKLTGVRH 345
Query: 301 VPSIRMNLISTGKLDDDGYQSEFGGNQWKLTKGSKLVAVGHRKSTVYTS 348
+P ++ NLIS G+LD +GY + F G +WK+TKG+ ++A G + T+Y +
Sbjct: 346 IPGLKRNLISVGQLDGEGYSTTFSGCEWKITKGALVIARGKKTGTLYVT 390
BLAST of Moc03g01120 vs. ExPASy TrEMBL
Match:
A0A6A2XKG3 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00112399pilonHSYRG00067 PE=4 SV=1)
HSP 1 Score: 236.1 bits (601), Expect = 3.1e-58
Identity = 135/366 (36.89%), Postives = 218/366 (59.56%), Query Frame = 0
Query: 1 MKDEDWVETNEQAVAFIRLCLSMNVASLVANETTTIDLMKALENRYEKPSANNKVYLVRR 60
MKDEDW + QA+ IRL LS NVA +A E TT LM AL + YEKPSA+NKV+L+RR
Sbjct: 205 MKDEDWALLDRQALGVIRLTLSRNVAFNIAKEKTTAGLMAALSSMYEKPSASNKVHLMRR 264
Query: 61 FFNIQMEKNTSVNSHINEVTKLINQLASVKITFSDEVNAIQLLTSLPESWEMMKTTMSNL 120
FN++M + S+ H+NE+ + QL+SV+I F DEV A+ LL+SLP+SW T +S+
Sbjct: 265 LFNLRMTEGASMAQHLNELNTITTQLSSVEIEFDDEVRALILLSSLPDSWNATVTAVSSS 324
Query: 121 LGDKSLKFSEICDAAITEEVRRKRSGKESTFVQGSTLAVEKSKEKVASDDR--QQKHSRW 180
G+ LKF ++ D ++EE+RR+ SG+ ST T + ++ E+ ++ R ++
Sbjct: 325 SGNSKLKFDDVRDLVLSEEIRRRESGEASTSSALHTESRGRTSERNSNRGRSKSRRGKSR 384
Query: 181 DWKRDVECFHCHKKDHIKKNCRMLKEDLKRYMAESNAVVDNALVCVESNTEIGNQSSEWV 240
+D C++C K H K++CR LK+D + + + + N+ I W+
Sbjct: 385 TGNKDFTCYNCGKNGHFKRDCRALKKDTSTQGSANMTEETGDAMILSVNSPI----ESWI 444
Query: 241 INSAASVYISSNRRLFTSFRRGNCGHVRMGNGKLSKTKGIGNIRLKTNSETKLLLRDVRY 300
++S AS + +S + + ++ G+ G V + + + K G G+IRLK ++T L VR+
Sbjct: 445 LDSGASFHSTSCQEIMENYVSGDFGKVHLADDETLKIVGKGDIRLKLPNQTTWKLTGVRH 504
Query: 301 VPSIRMNLISTGKLDDDGYQSEFGGNQWKLTKGSKLVAVGHRKSTVYTSQLSVARGSLKQ 360
+P ++ NLIS G+LD +GY + F G +WK+TKG+ ++A G + T+Y + +L+
Sbjct: 505 IPGLKRNLISVGQLDGEGYSTTFSGCEWKITKGALVIARGKKTGTLYLT------SNLEN 560
Query: 361 QMQVAD 365
++VAD
Sbjct: 565 IIEVAD 560
BLAST of Moc03g01120 vs. TAIR 10
Match:
AT3G29785.1 (unknown protein; Has 90 Blast hits to 90 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 45.1 bits (105), Expect = 2.0e-04
Identity = 24/55 (43.64%), Postives = 31/55 (56.36%), Query Frame = 0
Query: 1 MKDEDWVETNEQAVAFIRLCLSMNVASLVANETTTIDLMKALENRYEKPSANNKV 56
M +DW Q + IRL +S N+A VA E + LMK L + Y+KPS NN V
Sbjct: 41 MSQDDWNILYRQVLDVIRLTISKNIAHNVAKEKSPDGLMKVLSDIYKKPSTNNTV 95
BLAST of Moc03g01120 vs. TAIR 10
Match:
AT3G21000.1 (Gag-Pol-related retrotransposon family protein )
HSP 1 Score: 44.7 bits (104), Expect = 2.6e-04
Identity = 60/326 (18.40%), Postives = 136/326 (41.72%), Query Frame = 0
Query: 2 KDEDWVETNEQAVAFIRLCLSMNVASLVANETTTIDLMKALENRYEKPSANNKVY----- 61
K D+V + +A+ ++ L+ +V + ++ D+ L E+ +
Sbjct: 62 KWRDFVVKDAKALQILQSSLTDSVFRKTLSASSAKDVWDLLRKGNEQATIRRLEQVTIRR 121
Query: 62 LVRRFFNIQMEKNTSVNSHINEVTKLINQLASVKITFSDEVNAIQLLTSLPESWEMMKTT 121
L ++ +++M S +S++++ +++ +L K+ SD + T+L S++ + +
Sbjct: 122 LEKQLEDLKMVDKESGSSYLDKALEILERLGRAKLEKSDYEICKNVFTTLSGSFDGLDSM 181
Query: 122 MSNLLGDKSLKFSEICDAAITEEVRRKRSGKESTFVQGSTLAVEKSKEKVASDDRQQKHS 181
+ L+ + + + + S +E+ F L ++ EK
Sbjct: 182 LEELIDVHKMTSKSLVEYFYYRV--HESSTEEAIFGLLKDLRLKSKSEK----------- 241
Query: 182 RWDWKRDVECFHCHKKDHIKKNCRMLKEDLKRYMAESNAVVDNALVCVESNTEIGNQSSE 241
W C C+K +H +++C+ + + E VVD L V +
Sbjct: 242 ---W-----CGLCYKNNHNQEDCK-FRIHTDKEEKEDEIVVDYRLETVPNLGAKTYDDDI 301
Query: 242 WVINSAASVYISSNRRLFTSFRRGNCGHVRMGNGKLSKTKGIGNIRLKTNSETKLLLRDV 301
W+I+ A + ++ + FT+ R V +G + +G G+++++ K +R+V
Sbjct: 302 WIIHKMAPINMTPYVKYFTTLDRTFKATVGTVDGTVLLVEGKGDVKIRMKEGKKKTIRNV 361
Query: 302 RYVPSIRMNLISTGKLDDDGYQSEFG 323
+VP + N++S GK+ Y G
Sbjct: 362 IFVPGLNRNVLSFGKMVSKRYSISTG 365
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
RVW84195.1 | 2.9e-66 | 39.67 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera] | [more] |
RVW14266.1 | 2.9e-66 | 39.67 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera] | [more] |
KAF7121453.1 | 1.9e-65 | 40.32 | hypothetical protein RHSIM_Rhsim13G0116100 [Rhododendron simsii] | [more] |
KAF7129225.1 | 4.1e-65 | 40.05 | hypothetical protein RHSIM_Rhsim10G0050800 [Rhododendron simsii] | [more] |
KAF7129546.1 | 7.1e-65 | 39.47 | hypothetical protein RHSIM_Rhsim10G0154200 [Rhododendron simsii] | [more] |
Match Name | E-value | Identity | Description | |
P10978 | 4.1e-47 | 32.79 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... | [more] |
Match Name | E-value | Identity | Description | |
A0A438BTH6 | 1.4e-66 | 39.67 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... | [more] |
A0A438HI91 | 1.4e-66 | 39.67 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... | [more] |
A0A438IBT7 | 2.2e-59 | 37.77 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... | [more] |
A0A6A3BGE7 | 4.8e-59 | 38.11 | Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110195pilon... | [more] |
A0A6A2XKG3 | 3.1e-58 | 36.89 | Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00112399pilon... | [more] |
Match Name | E-value | Identity | Description | |
AT3G29785.1 | 2.0e-04 | 43.64 | unknown protein; Has 90 Blast hits to 90 proteins in 7 species: Archae - 0; Bact... | [more] |
AT3G21000.1 | 2.6e-04 | 18.40 | Gag-Pol-related retrotransposon family protein | [more] |