Moc03g00620 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc03g00620
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Paired amphipathic helix protein Sin3-like 4
Location	chr3: 455691 .. 456311 (+)
RNA-Seq Expression	Moc03g00620
Synteny	Moc03g00620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGGAGGAGGGAAATTAACCACTAACGATGCCCTACAGTATCTCAAGAGAGTGAAGGAAATTTTCGAAGACAAGAGAGAAAGCTACGAAGAATTCCTCCAAGTCATGAAAGATTTCAAGGCCCGAAGAATGGACGCCGCGGGAGCCATTGCAAGAGTGAAGGATCTGTTCATAGGGCACCGAGATCTCATTTTGGGCTTCAATTCCTTCCTCCCCGAAGGCTACGAGATCTCTTTCAAATTCAAACACATGATGCCCAAATCCCAGTACGAGGAGAGCCTTTTCCGACGTGAGGACGAGAGATTTGAACTCGACATGCTGCTGGAGTCTGTCAACTCTGCTGCCAAGCATGTCGAGGAACTGCTCGACAAGATGAACAACAACGACAATGCGGTCAGAGCGGAATGTCCGGTCAGGATTGAGGATCACCTCAGTGTTCTGAATCTGAGGTGCATCGAACGGCTGTACGGTGATCATGGGGTTGATGTTGTGGATGTGTTGAGGAAGAATTCGGCTGTGGCTCTGCCTGTTATTTTGGCCCGTTTGAAGCAGAAACAGGAAGAATGGGCACAGTGTCGTGATGATTTCAATCAAGTTTGGGCTTCAAATACACGCTGA

mRNA sequence

ATGGCGGGAGGAGGGAAATTAACCACTAACGATGCCCTACAGTATCTCAAGAGAGTGAAGGAAATTTTCGAAGACAAGAGAGAAAGCTACGAAGAATTCCTCCAAGTCATGAAAGATTTCAAGGCCCGAAGAATGGACGCCGCGGGAGCCATTGCAAGAGTGAAGGATCTGTTCATAGGGCACCGAGATCTCATTTTGGGCTTCAATTCCTTCCTCCCCGAAGGCTACGAGATCTCTTTCAAATTCAAACACATGATGCCCAAATCCCAGTACGAGGAGAGCCTTTTCCGACGTGAGGACGAGAGATTTGAACTCGACATGCTGCTGGAGTCTGTCAACTCTGCTGCCAAGCATGTCGAGGAACTGCTCGACAAGATGAACAACAACGACAATGCGGTCAGAGCGGAATGTCCGGTCAGGATTGAGGATCACCTCAGTGTTCTGAATCTGAGGTGCATCGAACGGCTGTACGGTGATCATGGGGTTGATGTTGTGGATGTGTTGAGGAAGAATTCGGCTGTGGCTCTGCCTGTTATTTTGGCCCGTTTGAAGCAGAAACAGGAAGAATGGGCACAGTGTCGTGATGATTTCAATCAAGTTTGGGCTTCAAATACACGCTGA

Coding sequence (CDS)

ATGGCGGGAGGAGGGAAATTAACCACTAACGATGCCCTACAGTATCTCAAGAGAGTGAAGGAAATTTTCGAAGACAAGAGAGAAAGCTACGAAGAATTCCTCCAAGTCATGAAAGATTTCAAGGCCCGAAGAATGGACGCCGCGGGAGCCATTGCAAGAGTGAAGGATCTGTTCATAGGGCACCGAGATCTCATTTTGGGCTTCAATTCCTTCCTCCCCGAAGGCTACGAGATCTCTTTCAAATTCAAACACATGATGCCCAAATCCCAGTACGAGGAGAGCCTTTTCCGACGTGAGGACGAGAGATTTGAACTCGACATGCTGCTGGAGTCTGTCAACTCTGCTGCCAAGCATGTCGAGGAACTGCTCGACAAGATGAACAACAACGACAATGCGGTCAGAGCGGAATGTCCGGTCAGGATTGAGGATCACCTCAGTGTTCTGAATCTGAGGTGCATCGAACGGCTGTACGGTGATCATGGGGTTGATGTTGTGGATGTGTTGAGGAAGAATTCGGCTGTGGCTCTGCCTGTTATTTTGGCCCGTTTGAAGCAGAAACAGGAAGAATGGGCACAGTGTCGTGATGATTTCAATCAAGTTTGGGCTTCAAATACACGCTGA

Protein sequence

MAGGGKLTTNDALQYLKRVKEIFEDKRESYEEFLQVMKDFKARRMDAAGAIARVKDLFIGHRDLILGFNSFLPEGYEISFKFKHMMPKSQYEESLFRREDERFELDMLLESVNSAAKHVEELLDKMNNNDNAVRAECPVRIEDHLSVLNLRCIERLYGDHGVDVVDVLRKNSAVALPVILARLKQKQEEWAQCRDDFNQVWASNTR

Homology

[Close]

BLAST of Moc03g00620 vs. NCBI nr
Match: GER41363.1 (paired amphipathic helix protein Sin3, partial [Striga asiatica])

HSP 1 Score: 201.4 bits (511), Expect = 7.3e-48
Identity = 126/315 (40.00%), Postives = 162/315 (51.43%), Query Frame = 0


Query: 6   KLTTNDALQYLKRVKEIFEDKRESYEEFLQVMKDFKARRMD-AAGAIARVKDLFIGHRDL 65
           KL+TNDAL YLK VK++F+D+RE Y++FL VM+D KA+R+D AA  I RVK+LF GH +L
Sbjct: 126 KLSTNDALTYLKEVKDMFQDQREKYDKFLDVMEDIKAQRIDTAACVIGRVKELFKGHPNL 185

Query: 66  ILGFNSFLPEGYEIS--------------------------------------------- 125
           ILGFN+FLP+GYEI+                                             
Sbjct: 186 ILGFNTFLPKGYEITLTDEDEAPPERTVEFEEAISFVNKIKVATLSEDHSDLLDEFTRFL 245

Query: 126 ------------------------------------------------------------ 185
                                                                       
Sbjct: 246 PDTSAQGGKDKERYNLKYWEKSIQELDLSNCQRCTPSYRLLPKEYPIPTASQKSDLDAKV 305

Query: 186 ------------FKFKHMMPKSQYEESLFRREDERFELDMLLESVNSAAKHVEELLDKMN 203
                       + FKHM  ++QYEESLFR ED+RFELDMLLE+V+S  K  EELL+  N
Sbjct: 306 LNDHWVSSGSEDYAFKHMR-RNQYEESLFRCEDDRFELDMLLETVSSTVKWAEELLNSTN 365

[Close]

BLAST of Moc03g00620 vs. NCBI nr
Match: KAG9133496.1 (hypothetical protein Leryth_022679 [Lithospermum erythrorhizon])

HSP 1 Score: 192.2 bits (487), Expect = 4.4e-45
Identity = 132/394 (33.50%), Postives = 166/394 (42.13%), Query Frame = 0


Query: 6   KLTTNDALQYLKRVKEIFEDKRESYEEFLQVMKDFKARRMDAAGAIARVKDLFIGHRDLI 65
           +LTT DAL YL+ VK++F DK++ YEEFL+VMKDFKA+R+D    I RVK LF+GH+ LI
Sbjct: 22  RLTTTDALTYLQLVKDVFRDKKDKYEEFLEVMKDFKAQRIDTHVVIRRVKQLFVGHQHLI 81

Query: 66  LGFNSFLPEGYEIS---------------------------------------------- 125
           LGFN+F+P+G +I+                                              
Sbjct: 82  LGFNTFIPKGCQITLTPEEGGPLLAKKQVQIDDAFSFVGKIKAKLQGDNHVFKSFLHILS 141

Query: 126 ------------------------------------------------------------ 185
                                                                       
Sbjct: 142 MYKMENKSVSEVYQEVSELFRDHPDLLSEFTLFLPYDSVAATIRDSQADIREQGYDERNL 201

Query: 186 ------------------------------------------------------------ 203
                                                                       
Sbjct: 202 NHNGVQHVFCNRKSSADQFHQFGDGTENNVKLDDHEKERGAQHKDNDGSEQHRYLQKSIQ 261

[Close]

BLAST of Moc03g00620 vs. NCBI nr
Match: KAG9133497.1 (hypothetical protein Leryth_022679 [Lithospermum erythrorhizon])

HSP 1 Score: 192.2 bits (487), Expect = 4.4e-45
Identity = 132/394 (33.50%), Postives = 166/394 (42.13%), Query Frame = 0


Query: 6   KLTTNDALQYLKRVKEIFEDKRESYEEFLQVMKDFKARRMDAAGAIARVKDLFIGHRDLI 65
           +LTT DAL YL+ VK++F DK++ YEEFL+VMKDFKA+R+D    I RVK LF+GH+ LI
Sbjct: 22  RLTTTDALTYLQLVKDVFRDKKDKYEEFLEVMKDFKAQRIDTHVVIRRVKQLFVGHQHLI 81

Query: 66  LGFNSFLPEGYEIS---------------------------------------------- 125
           LGFN+F+P+G +I+                                              
Sbjct: 82  LGFNTFIPKGCQITLTPEEGGPLLAKKQVQIDDAFSFVGKIKAKLQGDNHVFKSFLHILS 141

Query: 126 ------------------------------------------------------------ 185
                                                                       
Sbjct: 142 MYKMENKSVSEVYQEVSELFRDHPDLLSEFTLFLPYDSVAATIRDSQADIREQGYDERNL 201

Query: 186 ------------------------------------------------------------ 203
                                                                       
Sbjct: 202 NHNGVQHVFCNRKSSADQFHQFGDGTENNVKLDDHEKERGAQHKDNDGSEQHRYLQKSIQ 261

[Close]

BLAST of Moc03g00620 vs. NCBI nr
Match: XP_022151192.1 (paired amphipathic helix protein Sin3-like 4 isoform X2 [Momordica charantia])

HSP 1 Score: 189.1 bits (479), Expect = 3.8e-44
Identity = 93/123 (75.61%), Postives = 107/123 (86.99%), Query Frame = 0


Query: 80  FKFKHMMPKSQYEESLFRREDERFELDMLLESVNSAAKHVEELLDKMNNNDNAVRAECPV 139
           + FKHM  K+QYEESLFR ED+RFELDMLLESVN   K VEELLDK+NN  N ++A+CP+
Sbjct: 532 YSFKHMR-KNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLDKINN--NVIKADCPI 591

Query: 140 RIEDHLSVLNLRCIERLYGDHGVDVVDVLRKNSAVALPVILARLKQKQEEWAQCRDDFNQ 199
            IEDHL+ LNLRCIERLYGDHG+DV+DVLRKNS +ALPVIL RLKQKQEEWA+CR DFN+
Sbjct: 592 SIEDHLTALNLRCIERLYGDHGLDVMDVLRKNSPLALPVILTRLKQKQEEWARCRYDFNK 651

Query: 200 VWA 203
           VWA
Sbjct: 652 VWA 651

[Close]

BLAST of Moc03g00620 vs. NCBI nr
Match: XP_022151192.1 (paired amphipathic helix protein Sin3-like 4 isoform X2 [Momordica charantia])

HSP 1 Score: 131.7 bits (330), Expect = 7.1e-27
Identity = 78/157 (49.68%), Postives = 102/157 (64.97%), Query Frame = 0


Query: 1   MAGGG---KLTTNDALQYLKRVKEIFEDKRESYEEFLQVMKDFKARRMDAAGAIARVKDL 60
           MAGGG   KLTTNDAL YLKRVK+IF+DKRE YE+FL+VMKDFKA+R+D AG IARVKDL
Sbjct: 31  MAGGGSAQKLTTNDALVYLKRVKDIFQDKREKYEDFLEVMKDFKAQRIDTAGVIARVKDL 90

Query: 61  FIGHRDLILGFNSFLPEGYEISFKFKHMMPKS----QYEESL--FRREDERFELDMLLES 120
           F GHRDLILGFN+FLP+GYEI+   +   P      ++EE++    +   RF+ D   + 
Sbjct: 91  FKGHRDLILGFNTFLPKGYEITLPLEDDQPPQKKPVEFEEAINFVNKIKTRFQGD---DH 150

Query: 121 VNSAAKHVEELLDKMNNNDNAVRAECPVRIEDHLSVL 149
           V  +   +  +  K N +   V  E     ++H  +L
Sbjct: 151 VYKSFLDILNMYRKENKSITEVYQEVAALFQEHPDLL 184

HSP 2 Score: 189.1 bits (479), Expect = 3.8e-44
Identity = 93/123 (75.61%), Postives = 107/123 (86.99%), Query Frame = 0


Query: 80  FKFKHMMPKSQYEESLFRREDERFELDMLLESVNSAAKHVEELLDKMNNNDNAVRAECPV 139
           + FKHM  K+QYEESLFR ED+RFELDMLLESVN   K VEELLDK+NN  N ++A+CP+
Sbjct: 522 YSFKHMR-KNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLDKINN--NVIKADCPI 581

Query: 140 RIEDHLSVLNLRCIERLYGDHGVDVVDVLRKNSAVALPVILARLKQKQEEWAQCRDDFNQ 199
            IEDHL+ LNLRCIERLYGDHG+DV+DVLRKNS +ALPVIL RLKQKQEEWA+CR DFN+
Sbjct: 582 SIEDHLTALNLRCIERLYGDHGLDVMDVLRKNSPLALPVILTRLKQKQEEWARCRYDFNK 641

Query: 200 VWA 203
           VWA
Sbjct: 642 VWA 641

[Close]

BLAST of Moc03g00620 vs. ExPASy Swiss-Prot
Match: O48686 (Paired amphipathic helix protein Sin3-like 3 OS=Arabidopsis thaliana OX=3702 GN=SNL3 PE=1 SV=3)

HSP 1 Score: 178.7 bits (452), Expect = 6.7e-44
Identity = 86/123 (69.92%), Postives = 106/123 (86.18%), Query Frame = 0


Query: 80  FKFKHMMPKSQYEESLFRREDERFELDMLLESVNSAAKHVEELLDKMNNNDNAVRAECPV 139
           + F HM  K+QYEESLF+ ED+RFELDMLLESVNS  KHVEELL K+N+N+  ++   P+
Sbjct: 471 YSFSHMR-KNQYEESLFKCEDDRFELDMLLESVNSTTKHVEELLTKINSNE--LKTNSPI 530

Query: 140 RIEDHLSVLNLRCIERLYGDHGVDVVDVLRKNSAVALPVILARLKQKQEEWAQCRDDFNQ 199
           R+EDHL+ LNLRCIERLYGDHG+DV+DVL+KN ++ALPVIL RLKQKQEEWA+CR DF++
Sbjct: 531 RVEDHLTALNLRCIERLYGDHGLDVMDVLKKNVSLALPVILTRLKQKQEEWARCRSDFDK 590

Query: 200 VWA 203
           VWA
Sbjct: 591 VWA 590

HSP 2 Score: 109.4 bits (272), Expect = 5.0e-23
Identity = 66/157 (42.04%), Postives = 98/157 (62.42%), Query Frame = 0


Query: 1   MAGGG---KLTTNDALQYLKRVKEIFEDKRESYEEFLQVMKDFKARRMDAAGAIARVKDL 60
           M GGG   KLTTNDAL YLK VK+ F+D+R  Y+EFL+VMK+FK++R+D AG I RVK+L
Sbjct: 1   MVGGGSAQKLTTNDALAYLKAVKDKFQDQRGKYDEFLEVMKNFKSQRVDTAGVITRVKEL 60

Query: 61  FIGHRDLILGFNSFLPEGYEISFKFKHMMP----KSQYEE--SLFRREDERFELDMLLES 120
           F GH++LILGFN+FLP+G+EI+ + +   P    + ++EE  S   +   RF+ D   + 
Sbjct: 61  FKGHQELILGFNTFLPKGFEITLQPEDGQPPLKKRVEFEEAISFVNKIKTRFQGD---DR 120

Query: 121 VNSAAKHVEELLDKMNNNDNAVRAECPVRIEDHLSVL 149
           V  +   +  +  + + +   V  E  +   DH  +L
Sbjct: 121 VYKSFLDILNMYRRDSKSITEVYQEVAILFRDHSDLL 154

[Close]

BLAST of Moc03g00620 vs. ExPASy Swiss-Prot
Match: Q9XIE1 (Paired amphipathic helix protein Sin3-like 5 OS=Arabidopsis thaliana OX=3702 GN=SNL5 PE=3 SV=3)

HSP 1 Score: 170.6 bits (431), Expect = 1.8e-41
Identity = 137/451 (30.38%), Postives = 168/451 (37.25%), Query Frame = 0


Query: 1   MAGGGK---LTTNDALQYLKRVKEIFEDKRESYEEFLQVMKDFKARRMDAAGAIARVKDL 60
           ++GGG    LTT DAL YLK VK++F+D +E YE FL VMKDFKA+R+D  G IARVKDL
Sbjct: 32  ISGGGTTGGLTTVDALTYLKAVKDMFQDNKEKYETFLGVMKDFKAQRVDTNGVIARVKDL 91

Query: 61  FIGHRDLILGFNSFLPEGYEIS-------------------------------------- 120
           F G+ DL+LGFN+FLP+GY+I+                                      
Sbjct: 92  FKGYDDLLLGFNTFLPKGYKITLQPEDEKPKKPVDFQVAIEFVNRIKARFGGDDRAYKKF 151

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 152 LDILNMYRKETKSINEVYQEVTLLFQDHEDLLGEFVHFLPDFRGSVSVNDPLFQRNTIPR 211

Query: 181 ------------------------------------------------------------ 203
                                                                       
Sbjct: 212 DRNSTFPGMHPKHFEKKIKRSRHDEYTELSDQREDGDENLVAYSAESLANQGQWPGYPKV 271

[Close]

BLAST of Moc03g00620 vs. ExPASy Swiss-Prot
Match: O04539 (Paired amphipathic helix protein Sin3-like 4 OS=Arabidopsis thaliana OX=3702 GN=SNL4 PE=3 SV=3)

HSP 1 Score: 167.9 bits (424), Expect = 1.2e-40
Identity = 83/123 (67.48%), Postives = 104/123 (84.55%), Query Frame = 0


Query: 80  FKFKHMMPKSQYEESLFRREDERFELDMLLESVNSAAKHVEELLDKMNNNDNAVRAECPV 139
           + FKHM  K+QYEESLF+ ED+RFELDMLLESV SA   VEELL K+N+N+  ++ + P+
Sbjct: 485 YSFKHMR-KNQYEESLFKCEDDRFELDMLLESVISATNRVEELLAKINSNE--LKTDTPI 544

Query: 140 RIEDHLSVLNLRCIERLYGDHGVDVVDVLRKNSAVALPVILARLKQKQEEWAQCRDDFNQ 199
            IEDHL+ LNLRCIERLY DHG+DV+D+L+KN+ +ALPVIL RLKQKQEEWA+CR +FN+
Sbjct: 545 CIEDHLTALNLRCIERLYSDHGLDVLDLLKKNAYLALPVILTRLKQKQEEWARCRTEFNK 604

Query: 200 VWA 203
           VWA
Sbjct: 605 VWA 604

HSP 2 Score: 112.8 bits (281), Expect = 4.5e-24
Identity = 69/158 (43.67%), Postives = 97/158 (61.39%), Query Frame = 0


Query: 1   MAGGG---KLTTNDALQYLKRVKEIFEDKRESYEEFLQVMKDFKARRMDAAGAIARVKDL 60
           M GG    KLTTNDAL YLK VK+ F+DKR+ Y+EFL+VMKDFKA+R+D  G I RVK+L
Sbjct: 1   MVGGSSAQKLTTNDALAYLKAVKDKFQDKRDKYDEFLEVMKDFKAQRVDTTGVILRVKEL 60

Query: 61  FIGHRDLILGFNSFLPEGYEISFKFKHMMPKS-----QYEE--SLFRREDERFELDMLLE 120
           F G+R+LILGFN+FLP+G+EI+ + +   P +     ++EE  S   +   RF+ D   +
Sbjct: 61  FKGNRELILGFNTFLPKGFEITLRPEDDQPAAPKKPVEFEEAISFVNKIKTRFQGD---D 120

Query: 121 SVNSAAKHVEELLDKMNNNDNAVRAECPVRIEDHLSVL 149
            V  +   +  +  K N +   V  E  +   DH  +L
Sbjct: 121 RVYKSFLDILNMYRKENKSITEVYHEVAILFRDHHDLL 155

[Close]

BLAST of Moc03g00620 vs. ExPASy Swiss-Prot
Match: Q9LFQ3 (Paired amphipathic helix protein Sin3-like 2 OS=Arabidopsis thaliana OX=3702 GN=SNL2 PE=1 SV=2)

HSP 1 Score: 159.5 bits (402), Expect = 4.2e-38
Identity = 82/123 (66.67%), Postives = 96/123 (78.05%), Query Frame = 0


Query: 80  FKFKHMMPKSQYEESLFRREDERFELDMLLESVNSAAKHVEELLDKMNNNDNAVRAECPV 139
           + FKHM  ++QYEESLFR ED+RFELDMLLESV SAAK  EELL+ +   D  +  E   
Sbjct: 507 YSFKHMR-RNQYEESLFRCEDDRFELDMLLESVGSAAKSAEELLNII--IDKKISFEGSF 566

Query: 140 RIEDHLSVLNLRCIERLYGDHGVDVVDVLRKNSAVALPVILARLKQKQEEWAQCRDDFNQ 199
           RIEDH + LNLRCIERLYGDHG+DV D++RKN A ALPVIL RLKQKQ+EW +CR+ FN 
Sbjct: 567 RIEDHFTALNLRCIERLYGDHGLDVTDLIRKNPAAALPVILTRLKQKQDEWTKCREGFNV 626

Query: 200 VWA 203
           VWA
Sbjct: 627 VWA 626

HSP 2 Score: 105.5 bits (262), Expect = 7.2e-22
Identity = 63/147 (42.86%), Postives = 90/147 (61.22%), Query Frame = 0


Query: 6   KLTTNDALQYLKRVKEIFEDKRESYEEFLQVMKDFKARRMDAAGAIARVKDLFIGHRDLI 65
           KLTT+DAL YLK VKE+F+D+R+ Y+ FL+VMKDFKA++ D +G I+RVK+LF GH +LI
Sbjct: 47  KLTTDDALTYLKEVKEMFQDQRDKYDMFLEVMKDFKAQKTDTSGVISRVKELFKGHNNLI 106

Query: 66  LGFNSFLPEGYEISFKFKHMMPKS--QYEE--SLFRREDERFELDMLLESVNSAAKHVEE 125
            GFN+FLP+G+EI+        K   ++EE  S   +   RF+ +   E V  +   +  
Sbjct: 107 FGFNTFLPKGFEITLDDVEAPSKKTVEFEEAISFVNKIKTRFQHN---ELVYKSFLEILN 166

Query: 126 LLDKMNNNDNAVRAECPVRIEDHLSVL 149
           +  K N +   V  E     EDH  +L
Sbjct: 167 MYRKDNKDITEVYNEVSTLFEDHSDLL 190

[Close]

BLAST of Moc03g00620 vs. ExPASy Swiss-Prot
Match: Q9SRH9 (Paired amphipathic helix protein Sin3-like 1 OS=Arabidopsis thaliana OX=3702 GN=SNL1 PE=1 SV=2)

HSP 1 Score: 157.5 bits (397), Expect = 1.6e-37
Identity = 79/124 (63.71%), Postives = 97/124 (78.23%), Query Frame = 0


Query: 80  FKFKHMMPKSQYEESLFRREDERFELDMLLESVNSAAKHVEELLDKMNNNDNAVRAECPV 139
           + FKHM  ++QYEESLFR ED+RFELDMLLESV+SAA+  E LL+ +   +  +      
Sbjct: 512 YSFKHMR-RNQYEESLFRCEDDRFELDMLLESVSSAARSAESLLNII--TEKKISFSGSF 571

Query: 140 RIEDHLSVLNLRCIERLYGDHGVDVVDVLRKNSAVALPVILARLKQKQEEWAQCRDDFNQ 199
           RIEDH + LNLRCIERLYGDHG+DV+D+L KN A ALPVIL RLKQKQ EW +CRDDF++
Sbjct: 572 RIEDHFTALNLRCIERLYGDHGLDVIDILNKNPATALPVILTRLKQKQGEWKKCRDDFDK 631

Query: 200 VWAS 204
           VWA+
Sbjct: 632 VWAN 632

HSP 2 Score: 112.1 bits (279), Expect = 7.7e-24
Identity = 66/148 (44.59%), Postives = 93/148 (62.84%), Query Frame = 0


Query: 6   KLTTNDALQYLKRVKEIFEDKRESYEEFLQVMKDFKARRMDAAGAIARVKDLFIGHRDLI 65
           KLTTNDAL YL+ VKE+F+D+RE Y+ FL+VMKDFKA+R D  G IARVK+LF GH +LI
Sbjct: 52  KLTTNDALSYLREVKEMFQDQREKYDRFLEVMKDFKAQRTDTGGVIARVKELFKGHNNLI 111

Query: 66  LGFNSFLPEGYEIS-FKFKHMMPKS--QYEESL--FRREDERFELDMLLESVNSAAKHVE 125
            GFN+FLP+GYEI+  +    +PK   ++E+++    +   RF+ D   E V  +   + 
Sbjct: 112 YGFNTFLPKGYEITLIEEDDALPKKTVEFEQAINFVNKIKMRFKHD---EHVYKSFLEIL 171

Query: 126 ELLDKMNNNDNAVRAECPVRIEDHLSVL 149
            +  K N     V  E  +  + HL +L
Sbjct: 172 NMYRKENKEIKEVYNEVSILFQGHLDLL 196

[Close]

BLAST of Moc03g00620 vs. ExPASy TrEMBL
Match: A0A5A7Q7V8 (Paired amphipathic helix protein Sin3 (Fragment) OS=Striga asiatica OX=4170 GN=STAS_18072 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 3.5e-48
Identity = 126/315 (40.00%), Postives = 162/315 (51.43%), Query Frame = 0


Query: 6   KLTTNDALQYLKRVKEIFEDKRESYEEFLQVMKDFKARRMD-AAGAIARVKDLFIGHRDL 65
           KL+TNDAL YLK VK++F+D+RE Y++FL VM+D KA+R+D AA  I RVK+LF GH +L
Sbjct: 126 KLSTNDALTYLKEVKDMFQDQREKYDKFLDVMEDIKAQRIDTAACVIGRVKELFKGHPNL 185

Query: 66  ILGFNSFLPEGYEIS--------------------------------------------- 125
           ILGFN+FLP+GYEI+                                             
Sbjct: 186 ILGFNTFLPKGYEITLTDEDEAPPERTVEFEEAISFVNKIKVATLSEDHSDLLDEFTRFL 245

Query: 126 ------------------------------------------------------------ 185
                                                                       
Sbjct: 246 PDTSAQGGKDKERYNLKYWEKSIQELDLSNCQRCTPSYRLLPKEYPIPTASQKSDLDAKV 305

Query: 186 ------------FKFKHMMPKSQYEESLFRREDERFELDMLLESVNSAAKHVEELLDKMN 203
                       + FKHM  ++QYEESLFR ED+RFELDMLLE+V+S  K  EELL+  N
Sbjct: 306 LNDHWVSSGSEDYAFKHMR-RNQYEESLFRCEDDRFELDMLLETVSSTVKWAEELLNSTN 365

[Close]

BLAST of Moc03g00620 vs. ExPASy TrEMBL
Match: M4DN04 (HDAC_interact domain-containing protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 1.6e-45
Identity = 131/368 (35.60%), Postives = 164/368 (44.57%), Query Frame = 0


Query: 5   GKLTTNDALQYLKRVKEIFEDKRESYEEFLQVMKDFKARRMDAAGAIARVKDLFIGHRDL 64
           G LTTNDAL YLK VK++F+DK++ Y+ FL +MKDFKA+R++  G I +VK+LF G+ DL
Sbjct: 2   GGLTTNDALSYLKVVKDMFQDKKDKYDTFLALMKDFKAQRVNTDGVIEKVKELFKGYDDL 61

Query: 65  ILGFNSFLPEGYEIS--------------------------------------------- 124
           +LGFN+FLP+GY I+                                             
Sbjct: 62  LLGFNTFLPKGYRITLPEKKPVDFDEAIDFVNKIKARFGNDVRAYRRFLDILNMYKTEGK 121

Query: 125 ------------------------------------------------------------ 184
                                                                       
Sbjct: 122 SISTVYQERMKFGSRPDEYTDQREDGDENLVAAGDSRGKSLNQGQWRQVEDNEDGHENVV 181

Query: 185 ------------------------------------------------------------ 203
                                                                       
Sbjct: 182 FGNGSHKNNMAKGINELDLSDCVQCTPSYRHLPDDYPIPTSSYRNSLGEKVLNDHWVSVT 241

[Close]

BLAST of Moc03g00620 vs. ExPASy TrEMBL
Match: A0A6J1DDV1 (paired amphipathic helix protein Sin3-like 4 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111019172 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 1.8e-44
Identity = 93/123 (75.61%), Postives = 107/123 (86.99%), Query Frame = 0


Query: 80  FKFKHMMPKSQYEESLFRREDERFELDMLLESVNSAAKHVEELLDKMNNNDNAVRAECPV 139
           + FKHM  K+QYEESLFR ED+RFELDMLLESVN   K VEELLDK+NN  N ++A+CP+
Sbjct: 552 YSFKHMR-KNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLDKINN--NVIKADCPI 611

Query: 140 RIEDHLSVLNLRCIERLYGDHGVDVVDVLRKNSAVALPVILARLKQKQEEWAQCRDDFNQ 199
            IEDHL+ LNLRCIERLYGDHG+DV+DVLRKNS +ALPVIL RLKQKQEEWA+CR DFN+
Sbjct: 612 SIEDHLTALNLRCIERLYGDHGLDVMDVLRKNSPLALPVILTRLKQKQEEWARCRYDFNK 671

Query: 200 VWA 203
           VWA
Sbjct: 672 VWA 671

[Close]

BLAST of Moc03g00620 vs. ExPASy TrEMBL
Match: A0A6J1DDV1 (paired amphipathic helix protein Sin3-like 4 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111019172 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 3.4e-27
Identity = 78/157 (49.68%), Postives = 102/157 (64.97%), Query Frame = 0


Query: 1   MAGGG---KLTTNDALQYLKRVKEIFEDKRESYEEFLQVMKDFKARRMDAAGAIARVKDL 60
           MAGGG   KLTTNDAL YLKRVK+IF+DKRE YE+FL+VMKDFKA+R+D AG IARVKDL
Sbjct: 31  MAGGGSAQKLTTNDALVYLKRVKDIFQDKREKYEDFLEVMKDFKAQRIDTAGVIARVKDL 90

Query: 61  FIGHRDLILGFNSFLPEGYEISFKFKHMMPKS----QYEESL--FRREDERFELDMLLES 120
           F GHRDLILGFN+FLP+GYEI+   +   P      ++EE++    +   RF+ D   + 
Sbjct: 91  FKGHRDLILGFNTFLPKGYEITLPLEDDQPPQKKPVEFEEAINFVNKIKTRFQGD---DH 150

Query: 121 VNSAAKHVEELLDKMNNNDNAVRAECPVRIEDHLSVL 149
           V  +   +  +  K N +   V  E     ++H  +L
Sbjct: 151 VYKSFLDILNMYRKENKSITEVYQEVAALFQEHPDLL 184

HSP 2 Score: 189.1 bits (479), Expect = 1.8e-44
Identity = 93/123 (75.61%), Postives = 107/123 (86.99%), Query Frame = 0


Query: 80  FKFKHMMPKSQYEESLFRREDERFELDMLLESVNSAAKHVEELLDKMNNNDNAVRAECPV 139
           + FKHM  K+QYEESLFR ED+RFELDMLLESVN   K VEELLDK+NN  N ++A+CP+
Sbjct: 532 YSFKHMR-KNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLDKINN--NVIKADCPI 591

Query: 140 RIEDHLSVLNLRCIERLYGDHGVDVVDVLRKNSAVALPVILARLKQKQEEWAQCRDDFNQ 199
            IEDHL+ LNLRCIERLYGDHG+DV+DVLRKNS +ALPVIL RLKQKQEEWA+CR DFN+
Sbjct: 592 SIEDHLTALNLRCIERLYGDHGLDVMDVLRKNSPLALPVILTRLKQKQEEWARCRYDFNK 651

Query: 200 VWA 203
           VWA
Sbjct: 652 VWA 651

[Close]

BLAST of Moc03g00620 vs. ExPASy TrEMBL
Match: A0A6J1DCT7 (paired amphipathic helix protein Sin3-like 4 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111019172 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 3.4e-27
Identity = 78/157 (49.68%), Postives = 102/157 (64.97%), Query Frame = 0


Query: 1   MAGGG---KLTTNDALQYLKRVKEIFEDKRESYEEFLQVMKDFKARRMDAAGAIARVKDL 60
           MAGGG   KLTTNDAL YLKRVK+IF+DKRE YE+FL+VMKDFKA+R+D AG IARVKDL
Sbjct: 31  MAGGGSAQKLTTNDALVYLKRVKDIFQDKREKYEDFLEVMKDFKAQRIDTAGVIARVKDL 90

Query: 61  FIGHRDLILGFNSFLPEGYEISFKFKHMMPKS----QYEESL--FRREDERFELDMLLES 120
           F GHRDLILGFN+FLP+GYEI+   +   P      ++EE++    +   RF+ D   + 
Sbjct: 91  FKGHRDLILGFNTFLPKGYEITLPLEDDQPPQKKPVEFEEAINFVNKIKTRFQGD---DH 150

Query: 121 VNSAAKHVEELLDKMNNNDNAVRAECPVRIEDHLSVL 149
           V  +   +  +  K N +   V  E     ++H  +L
Sbjct: 151 VYKSFLDILNMYRKENKSITEVYQEVAALFQEHPDLL 184

HSP 2 Score: 189.1 bits (479), Expect = 1.8e-44
Identity = 93/123 (75.61%), Postives = 107/123 (86.99%), Query Frame = 0


Query: 80  FKFKHMMPKSQYEESLFRREDERFELDMLLESVNSAAKHVEELLDKMNNNDNAVRAECPV 139
           + FKHM  K+QYEESLFR ED+RFELDMLLESVN   K VEELLDK+NN  N ++A+CP+
Sbjct: 522 YSFKHMR-KNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLDKINN--NVIKADCPI 581

Query: 140 RIEDHLSVLNLRCIERLYGDHGVDVVDVLRKNSAVALPVILARLKQKQEEWAQCRDDFNQ 199
            IEDHL+ LNLRCIERLYGDHG+DV+DVLRKNS +ALPVIL RLKQKQEEWA+CR DFN+
Sbjct: 582 SIEDHLTALNLRCIERLYGDHGLDVMDVLRKNSPLALPVILTRLKQKQEEWARCRYDFNK 641

Query: 200 VWA 203
           VWA
Sbjct: 642 VWA 641

[Close]

BLAST of Moc03g00620 vs. TAIR 10
Match: AT1G24190.1 (SIN3-like 3 )

HSP 1 Score: 178.7 bits (452), Expect = 4.7e-45
Identity = 86/123 (69.92%), Postives = 106/123 (86.18%), Query Frame = 0


Query: 80  FKFKHMMPKSQYEESLFRREDERFELDMLLESVNSAAKHVEELLDKMNNNDNAVRAECPV 139
           + F HM  K+QYEESLF+ ED+RFELDMLLESVNS  KHVEELL K+N+N+  ++   P+
Sbjct: 471 YSFSHMR-KNQYEESLFKCEDDRFELDMLLESVNSTTKHVEELLTKINSNE--LKTNSPI 530

Query: 140 RIEDHLSVLNLRCIERLYGDHGVDVVDVLRKNSAVALPVILARLKQKQEEWAQCRDDFNQ 199
           R+EDHL+ LNLRCIERLYGDHG+DV+DVL+KN ++ALPVIL RLKQKQEEWA+CR DF++
Sbjct: 531 RVEDHLTALNLRCIERLYGDHGLDVMDVLKKNVSLALPVILTRLKQKQEEWARCRSDFDK 590

Query: 200 VWA 203
           VWA
Sbjct: 591 VWA 590

HSP 2 Score: 109.4 bits (272), Expect = 3.5e-24
Identity = 66/157 (42.04%), Postives = 98/157 (62.42%), Query Frame = 0


Query: 1   MAGGG---KLTTNDALQYLKRVKEIFEDKRESYEEFLQVMKDFKARRMDAAGAIARVKDL 60
           M GGG   KLTTNDAL YLK VK+ F+D+R  Y+EFL+VMK+FK++R+D AG I RVK+L
Sbjct: 1   MVGGGSAQKLTTNDALAYLKAVKDKFQDQRGKYDEFLEVMKNFKSQRVDTAGVITRVKEL 60

Query: 61  FIGHRDLILGFNSFLPEGYEISFKFKHMMP----KSQYEE--SLFRREDERFELDMLLES 120
           F GH++LILGFN+FLP+G+EI+ + +   P    + ++EE  S   +   RF+ D   + 
Sbjct: 61  FKGHQELILGFNTFLPKGFEITLQPEDGQPPLKKRVEFEEAISFVNKIKTRFQGD---DR 120

Query: 121 VNSAAKHVEELLDKMNNNDNAVRAECPVRIEDHLSVL 149
           V  +   +  +  + + +   V  E  +   DH  +L
Sbjct: 121 VYKSFLDILNMYRRDSKSITEVYQEVAILFRDHSDLL 154

[Close]

BLAST of Moc03g00620 vs. TAIR 10
Match: AT1G24190.2 (SIN3-like 3 )

HSP 1 Score: 178.7 bits (452), Expect = 4.7e-45
Identity = 86/123 (69.92%), Postives = 106/123 (86.18%), Query Frame = 0


Query: 80  FKFKHMMPKSQYEESLFRREDERFELDMLLESVNSAAKHVEELLDKMNNNDNAVRAECPV 139
           + F HM  K+QYEESLF+ ED+RFELDMLLESVNS  KHVEELL K+N+N+  ++   P+
Sbjct: 467 YSFSHMR-KNQYEESLFKCEDDRFELDMLLESVNSTTKHVEELLTKINSNE--LKTNSPI 526

Query: 140 RIEDHLSVLNLRCIERLYGDHGVDVVDVLRKNSAVALPVILARLKQKQEEWAQCRDDFNQ 199
           R+EDHL+ LNLRCIERLYGDHG+DV+DVL+KN ++ALPVIL RLKQKQEEWA+CR DF++
Sbjct: 527 RVEDHLTALNLRCIERLYGDHGLDVMDVLKKNVSLALPVILTRLKQKQEEWARCRSDFDK 586

Query: 200 VWA 203
           VWA
Sbjct: 587 VWA 586

HSP 2 Score: 109.4 bits (272), Expect = 3.5e-24
Identity = 66/157 (42.04%), Postives = 98/157 (62.42%), Query Frame = 0


Query: 1   MAGGG---KLTTNDALQYLKRVKEIFEDKRESYEEFLQVMKDFKARRMDAAGAIARVKDL 60
           M GGG   KLTTNDAL YLK VK+ F+D+R  Y+EFL+VMK+FK++R+D AG I RVK+L
Sbjct: 1   MVGGGSAQKLTTNDALAYLKAVKDKFQDQRGKYDEFLEVMKNFKSQRVDTAGVITRVKEL 60

Query: 61  FIGHRDLILGFNSFLPEGYEISFKFKHMMP----KSQYEE--SLFRREDERFELDMLLES 120
           F GH++LILGFN+FLP+G+EI+ + +   P    + ++EE  S   +   RF+ D   + 
Sbjct: 61  FKGHQELILGFNTFLPKGFEITLQPEDGQPPLKKRVEFEEAISFVNKIKTRFQGD---DR 120

Query: 121 VNSAAKHVEELLDKMNNNDNAVRAECPVRIEDHLSVL 149
           V  +   +  +  + + +   V  E  +   DH  +L
Sbjct: 121 VYKSFLDILNMYRRDSKSITEVYQEVAILFRDHSDLL 154

[Close]

BLAST of Moc03g00620 vs. TAIR 10
Match: AT1G59890.3 (SIN3-like 5 )

HSP 1 Score: 172.2 bits (435), Expect = 4.4e-43
Identity = 137/447 (30.65%), Postives = 168/447 (37.58%), Query Frame = 0


Query: 1   MAGGGK---LTTNDALQYLKRVKEIFEDKRESYEEFLQVMKDFKARRMDAAGAIARVKDL 60
           ++GGG    LTT DAL YLK VK++F+D +E YE FL VMKDFKA+R+D  G IARVKDL
Sbjct: 32  ISGGGTTGGLTTVDALTYLKAVKDMFQDNKEKYETFLGVMKDFKAQRVDTNGVIARVKDL 91

Query: 61  FIGHRDLILGFNSFLPEGYEIS-------------------------------------- 120
           F G+ DL+LGFN+FLP+GY+I+                                      
Sbjct: 92  FKGYDDLLLGFNTFLPKGYKITLQPEDEKPKKPVDFQVAIEFVNRIKARFGGDDRAYKKF 151

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 152 LDILNMYRKETKSINEVYQEVTLLFQDHEDLLGEFVHFLPDFRGSVSVNDPLFQRNTIPR 211

Query: 181 ------------------------------------------------------------ 203
                                                                       
Sbjct: 212 DRNSTFPGMHPKHFEKKIKRSRHDEYTELSDQREDGDENLVAYSAESLANQGQWPGYPKV 271

[Close]

BLAST of Moc03g00620 vs. TAIR 10
Match: AT1G59890.1 (SIN3-like 5 )

HSP 1 Score: 170.6 bits (431), Expect = 1.3e-42
Identity = 137/451 (30.38%), Postives = 168/451 (37.25%), Query Frame = 0


Query: 1   MAGGGK---LTTNDALQYLKRVKEIFEDKRESYEEFLQVMKDFKARRMDAAGAIARVKDL 60
           ++GGG    LTT DAL YLK VK++F+D +E YE FL VMKDFKA+R+D  G IARVKDL
Sbjct: 32  ISGGGTTGGLTTVDALTYLKAVKDMFQDNKEKYETFLGVMKDFKAQRVDTNGVIARVKDL 91

Query: 61  FIGHRDLILGFNSFLPEGYEIS-------------------------------------- 120
           F G+ DL+LGFN+FLP+GY+I+                                      
Sbjct: 92  FKGYDDLLLGFNTFLPKGYKITLQPEDEKPKKPVDFQVAIEFVNRIKARFGGDDRAYKKF 151

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 152 LDILNMYRKETKSINEVYQEVTLLFQDHEDLLGEFVHFLPDFRGSVSVNDPLFQRNTIPR 211

Query: 181 ------------------------------------------------------------ 203
                                                                       
Sbjct: 212 DRNSTFPGMHPKHFEKKIKRSRHDEYTELSDQREDGDENLVAYSAESLANQGQWPGYPKV 271

[Close]

BLAST of Moc03g00620 vs. TAIR 10
Match: AT1G59890.4 (SIN3-like 5 )

HSP 1 Score: 170.6 bits (431), Expect = 1.3e-42
Identity = 137/451 (30.38%), Postives = 168/451 (37.25%), Query Frame = 0


Query: 1   MAGGGK---LTTNDALQYLKRVKEIFEDKRESYEEFLQVMKDFKARRMDAAGAIARVKDL 60
           ++GGG    LTT DAL YLK VK++F+D +E YE FL VMKDFKA+R+D  G IARVKDL
Sbjct: 32  ISGGGTTGGLTTVDALTYLKAVKDMFQDNKEKYETFLGVMKDFKAQRVDTNGVIARVKDL 91

Query: 61  FIGHRDLILGFNSFLPEGYEIS-------------------------------------- 120
           F G+ DL+LGFN+FLP+GY+I+                                      
Sbjct: 92  FKGYDDLLLGFNTFLPKGYKITLQPEDEKPKKPVDFQVAIEFVNRIKARFGGDDRAYKKF 151

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 152 LDILNMYRKETKSINEVYQEVTLLFQDHEDLLGEFVHFLPDFRGSVSVNDPLFQRNTIPR 211

Query: 181 ------------------------------------------------------------ 203
                                                                       
Sbjct: 212 DRNSTFPGMHPKHFEKKIKRSRHDEYTELSDQREDGDENLVAYSAESLANQGQWPGYPKV 271

The following BLAST results are available for this feature:

BLAST of Moc03g00620 vs. NCBI nr


Match Name	E-value	Identity	Description
GER41363.1	7.3e-48	40.00	paired amphipathic helix protein Sin3, partial [Striga asiatica]	[more]
KAG9133496.1	4.4e-45	33.50	hypothetical protein Leryth_022679 [Lithospermum erythrorhizon]	[more]
KAG9133497.1	4.4e-45	33.50	hypothetical protein Leryth_022679 [Lithospermum erythrorhizon]	[more]
XP_022151192.1	3.8e-44	75.61	paired amphipathic helix protein Sin3-like 4 isoform X2 [Momordica charantia]	[more]
XP_022151192.1	7.1e-27	49.68	paired amphipathic helix protein Sin3-like 4 isoform X2 [Momordica charantia]	[more]

Pages

BLAST of Moc03g00620 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O48686	6.7e-44	69.92	Paired amphipathic helix protein Sin3-like 3 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9XIE1	1.8e-41	30.38	Paired amphipathic helix protein Sin3-like 5 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
O04539	1.2e-40	67.48	Paired amphipathic helix protein Sin3-like 4 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9LFQ3	4.2e-38	66.67	Paired amphipathic helix protein Sin3-like 2 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9SRH9	1.6e-37	63.71	Paired amphipathic helix protein Sin3-like 1 OS=Arabidopsis thaliana OX=3702 GN=...	[more]

BLAST of Moc03g00620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7Q7V8	3.5e-48	40.00	Paired amphipathic helix protein Sin3 (Fragment) OS=Striga asiatica OX=4170 GN=S...	[more]
M4DN04	1.6e-45	35.60	HDAC_interact domain-containing protein OS=Brassica rapa subsp. pekinensis OX=51...	[more]
A0A6J1DDV1	1.8e-44	75.61	paired amphipathic helix protein Sin3-like 4 isoform X1 OS=Momordica charantia O...	[more]
A0A6J1DDV1	3.4e-27	49.68	paired amphipathic helix protein Sin3-like 4 isoform X1 OS=Momordica charantia O...	[more]
A0A6J1DCT7	3.4e-27	49.68	paired amphipathic helix protein Sin3-like 4 isoform X2 OS=Momordica charantia O...	[more]

Pages

BLAST of Moc03g00620 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G24190.1	4.7e-45	69.92	SIN3-like 3	[more]
AT1G24190.2	4.7e-45	69.92	SIN3-like 3	[more]
AT1G59890.3	4.4e-43	30.65	SIN3-like 5	[more]
AT1G59890.1	1.3e-42	30.38	SIN3-like 5	[more]
AT1G59890.4	1.3e-42	30.38	SIN3-like 5	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 109..129
None	No IPR available	PANTHER	PTHR12346:SF29	PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1	coord: 80..202
None	No IPR available	PANTHER	PTHR12346:SF29	PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1	coord: 5..80
IPR013194	Histone deacetylase interacting domain	SMART	SM00761	hdac_interact2seq4b	coord: 44..136 e-value: 6.4E-7 score: 33.9
IPR013194	Histone deacetylase interacting domain	PFAM	PF08295	Sin3_corepress	coord: 81..130 e-value: 2.3E-12 score: 46.8
IPR003822	Paired amphipathic helix	PFAM	PF02671	PAH	coord: 28..72 e-value: 2.0E-12 score: 47.0
IPR003822	Paired amphipathic helix	PROSITE	PS51477	PAH	coord: 5..75 score: 16.524656
IPR036600	Paired amphipathic helix superfamily	GENE3D	1.20.1160.11	Paired amphipathic helix	coord: 11..73 e-value: 3.8E-21 score: 77.2
IPR036600	Paired amphipathic helix superfamily	SUPERFAMILY	47762	PAH2 domain	coord: 5..74
IPR039774	Transcriptional regulatory protein Sin3-like	PANTHER	PTHR12346	SIN3B-RELATED	coord: 80..202
IPR039774	Transcriptional regulatory protein Sin3-like	PANTHER	PTHR12346	SIN3B-RELATED	coord: 5..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc03g00620.1	Moc03g00620.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016575	histone deacetylation
biological_process	GO:0000122	negative regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0000785	chromatin
cellular_component	GO:0000118	histone deacetylase complex
molecular_function	GO:0003714	transcription corepressor activity