Moc03g00600 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc03g00600
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr3: 443487 .. 444566 (-)
RNA-Seq ExpressionMoc03g00600
SyntenyMoc03g00600
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATATTTGTAGTTTGGTGGCGAAAGAGACTACAACGAAGGAATTGTTGAAGGCCTTGCAAGACATGTATGAAAAACCTTCTGCCAATACAAAAATACTTTTATGGACGGAGTATTTTAATATCCACATGGATAAGGGAACCTCAGTAAATTCCCACATTAATAAGCTCATCGATATCTTGAACAAATTAGAAGGGATGAGTGTCAAGATTGAGGAAGAAGTGAAGGCTATGAGACTGTTGACATCTTTGCCTGACAGTTGGGAGATGATGAAGACCGCGATGTCAAATTCGCTAGGGGAAAACAGCTTGAAATTTTCAGTTATTTGTGATGCCGCCTTATTTGAGGAAGCTCGAAGAAAATTAGGGAAAATGTATGCATCTACTTCGGAGGTAAAGAACGGGGTTGAATCAGCTTTGGTAGTTCAGAACAAAGGAAAAACAAAGATGAATTACAATGGGAAGCGGCAGCAGAGATATAACAGGAGTAGTGAAAGTTCCAATGGAGAAGTGAAGTGTTATTACTGCCACAAGAAGGGACACGTAAAACGCTTTTGCATGAAGTTCAAAGAAGATTTTGAGAAGGGGAATAATATTGCAAATGTTGCAACAGGAGAAGAACGGATTGAAGAGTTTCTGGCTTGTGTTCAGAGGAACATATTTGTAAACTAGTGGGTAATGGACACTGCAGCATCAGCGCATGTTGCTTCAGACAGACGTTGGTTCTCATCTCTTGCTGTAGGTGATTATAGCTCAGTGAAGATGGGGAATGAGTGTATCTCCAAGGTGAGAGGAATTGGAGATGTTTGTTTGAAGACAAGCGAATGGACCGAGTTGGTGCTACAAGGCGTTAGGTATATTCCTAGCTTCAGATTTAATTTGTTATCTGCAGGGAAGTTAGATGATGATGGCTATAGCAGTGAGTTTGTTGGGGGTTGCTAGAAGCTCAATAGGGAATCCAAGGTGGTGGCAACAGGCCACAAGAGAACTTCTGTTTATGTGTCTGAATTTGAGGTTCCTAGAGGATCTGAAAGACATAGAATGCACAGAGTAGCTACAGATGGTTCAGACGAGACTTGA

mRNA sequence

ATGAATATTTGTAGTTTGGTGGCGAAAGAGACTACAACGAAGGAATTGTTGAAGGCCTTGCAAGACATGTATGAAAAACCTTCTGCCAATACAAAAATACTTTTATGGACGGAGTATTTTAATATCCACATGGATAAGGGAACCTCAGTAAATTCCCACATTAATAAGCTCATCGATATCTTGAACAAATTAGAAGGGATGAGTGTCAAGATTGAGGAAGAAGTGAAGGCTATGAGACTGTTGACATCTTTGCCTGACAGTTGGGAGATGATGAAGACCGCGATGTCAAATTCGCTAGGGGAAAACAGCTTGAAATTTTCAGTTATTTGTGATGCCGCCTTATTTGAGGAAGCTCGAAGAAAATTAGGGAAAATGTATGCATCTACTTCGGAGGTAAAGAACGGGGTTGAATCAGCTTTGGTAGTTCAGAACAAAGGAAAAACAAAGATGAATTACAATGGGAAGCGGCAGCAGAGATATAACAGGAGTAGTGAAAGTTCCAATGGAGAAGTGAAGTGTTATTACTGCCACAAGAAGGGACACGTAAAACGCTTTTGCATGAAGTTCAAAGAAGATTTTGAGAAGGGGAATAATATTGCAAATGTTGCAACAGGAGAAGAACGGATTGAAGAGTTTCTGGCTTGTAAGCTCAATAGGGAATCCAAGGTGGTGGCAACAGGCCACAAGAGAACTTCTGTTTATGTGTCTGAATTTGAGGTTCCTAGAGGATCTGAAAGACATAGAATGCACAGAGTAGCTACAGATGGTTCAGACGAGACTTGA

Coding sequence (CDS)

ATGAATATTTGTAGTTTGGTGGCGAAAGAGACTACAACGAAGGAATTGTTGAAGGCCTTGCAAGACATGTATGAAAAACCTTCTGCCAATACAAAAATACTTTTATGGACGGAGTATTTTAATATCCACATGGATAAGGGAACCTCAGTAAATTCCCACATTAATAAGCTCATCGATATCTTGAACAAATTAGAAGGGATGAGTGTCAAGATTGAGGAAGAAGTGAAGGCTATGAGACTGTTGACATCTTTGCCTGACAGTTGGGAGATGATGAAGACCGCGATGTCAAATTCGCTAGGGGAAAACAGCTTGAAATTTTCAGTTATTTGTGATGCCGCCTTATTTGAGGAAGCTCGAAGAAAATTAGGGAAAATGTATGCATCTACTTCGGAGGTAAAGAACGGGGTTGAATCAGCTTTGGTAGTTCAGAACAAAGGAAAAACAAAGATGAATTACAATGGGAAGCGGCAGCAGAGATATAACAGGAGTAGTGAAAGTTCCAATGGAGAAGTGAAGTGTTATTACTGCCACAAGAAGGGACACGTAAAACGCTTTTGCATGAAGTTCAAAGAAGATTTTGAGAAGGGGAATAATATTGCAAATGTTGCAACAGGAGAAGAACGGATTGAAGAGTTTCTGGCTTGTAAGCTCAATAGGGAATCCAAGGTGGTGGCAACAGGCCACAAGAGAACTTCTGTTTATGTGTCTGAATTTGAGGTTCCTAGAGGATCTGAAAGACATAGAATGCACAGAGTAGCTACAGATGGTTCAGACGAGACTTGA

Protein sequence

MNICSLVAKETTTKELLKALQDMYEKPSANTKILLWTEYFNIHMDKGTSVNSHINKLIDILNKLEGMSVKIEEEVKAMRLLTSLPDSWEMMKTAMSNSLGENSLKFSVICDAALFEEARRKLGKMYASTSEVKNGVESALVVQNKGKTKMNYNGKRQQRYNRSSESSNGEVKCYYCHKKGHVKRFCMKFKEDFEKGNNIANVATGEERIEEFLACKLNRESKVVATGHKRTSVYVSEFEVPRGSERHRMHRVATDGSDET
Homology
BLAST of Moc03g00600 vs. NCBI nr
Match: RVW44710.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 130.6 bits (327), Expect = 2.0e-26
Identity = 85/231 (36.80%), Postives = 127/231 (54.98%), Query Frame = 0

Query: 2   NICSLVAKETTTKELLKALQDMYEKPSANTKILLWTEYFNIHMDKGTSVNSHINKLIDIL 61
           +I   V KE TT +L+KAL DMYEKPSAN K+ L  + FN+ M K  SV  H+N+   I 
Sbjct: 70  SIAHNVVKEKTTADLMKALSDMYEKPSANNKVHLMKKLFNLKMTKNASVAQHLNEFNTIT 129

Query: 62  NKLEGMSVKIEEEVKAMRLLTSLPDSWEMMKTAMSNSLGENSLKFSVICDAALFEEARRK 121
           N+L  + +  ++E++A+ +L SLP+SWE M+ A+SNS G+  LK++ I D  L EE RR+
Sbjct: 130 NQLSSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRRR 189

Query: 122 LGKMYASTSEVKNGVESALVVQNKGK-----TKMNYNGKRQQRYNRSSESSNGEVKCYYC 181
                   +   +G  SAL ++ +G+     +    +  R    NRS   S  +V+C+ C
Sbjct: 190 -------DAGETSGSGSALNLETRGRGNNRNSNQGRSNSRNSNRNRSKSRSGQQVQCWNC 249

Query: 182 HKKGHVKRFCMKFKEDFEKGNNIANVATGEERIEEFLACKLNRESKVVATG 228
            K GH KR C   K+  E  ++ AN  T E +    LA     +  V+ +G
Sbjct: 250 GKTGHFKRQCKSPKKKNE--DDSANAVTEEVQDALLLAVDSPLDDWVLDSG 291

BLAST of Moc03g00600 vs. NCBI nr
Match: KAG7584790.1 (Zinc finger CCHC-type superfamily [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 130.2 bits (326), Expect = 2.6e-26
Identity = 82/209 (39.23%), Postives = 120/209 (57.42%), Query Frame = 0

Query: 2   NICSLVAKETTTKELLKALQDMYEKPSANTKILLWTEYFNIHMDKGTSVNSHINKLIDIL 61
           N+   VAKE TT+ L+K L DMYEKPSAN K+ L  + F++ M++G  V +H+N+   I+
Sbjct: 69  NVAHNVAKEKTTEGLMKVLSDMYEKPSANNKVFLMKKLFHLKMEEGGPVATHVNEFNTIV 128

Query: 62  NKLEGMSVKIEEEVKAMRLLTSLPDSWEMMKTAMSNSLGENSLKFSVICDAALFEEARRK 121
           N+L  + ++ ++EV+A+ LL SLP+SWE M+ A+SNS+G   LKF  + D  L EE RR 
Sbjct: 129 NQLSSVEIEFDDEVRALILLASLPNSWEPMRAAVSNSVGNQKLKFVDVRDRILGEEVRR- 188

Query: 122 LGKMYASTSEVKNGVESALVVQNKGKTKMNYN---GKRQQRYNRSSESSNGEVKCYYCHK 181
                  T E    + SA  V+N+G+ +   N   G+ + R  +    S   V+C+ C K
Sbjct: 189 -----IDTGE--TSMSSAFNVENRGRDQNRRNQNRGRSKSRNGKGQSKSRKPVECWNCGK 248

Query: 182 KGHVKRFC-MKFKEDFEKGNNIANVATGE 207
            GH K  C    K++  KG   AN  T E
Sbjct: 249 TGHFKSNCWAPPKKENNKGGG-ANAVTDE 268

BLAST of Moc03g00600 vs. NCBI nr
Match: RZC29599.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Glycine soja])

HSP 1 Score: 130.2 bits (326), Expect = 2.6e-26
Identity = 89/225 (39.56%), Postives = 125/225 (55.56%), Query Frame = 0

Query: 2    NICSLVAKETTTKELLKALQDMYEKPSANTKILLWTEYFNIHMDKGTSVNSHINKLIDIL 61
            N+   +  E TT  L+KAL DMYEKPSA  K+ L    FN+ M +G SV  HIN+   IL
Sbjct: 940  NVAFNIVNEKTTAGLMKALSDMYEKPSAANKVYLMRRLFNLKMGEGISVTDHINEFNTIL 999

Query: 62   NKLEGMSVKIEEEVKAMRLLTSLPDSWEMMKTAMSNSLGENSLKFSVICDAALFEEARRK 121
             +LE + +K E+EVKA+ LL+SLPDSW    TA+S+S  EN+LK S I D  L E+ R++
Sbjct: 1000 AQLESVQIKFEDEVKALILLSSLPDSWAATVTAVSSSTRENTLKLSDIRDLILSEDVRKR 1059

Query: 122  LGKMYASTSEVKNGVESALVVQNKGK-TKMNYNGK-RQQRYNRSSESSNGEVKCYYCHKK 181
                  S+S V N   SAL  + +G+ T+   NG+ R +   +       +V C+ C K+
Sbjct: 1060 --DSGESSSHVSN---SALNTEGRGRTTQKGQNGRGRSKSRGKGQRKFQSDVTCWNCDKR 1119

Query: 182  GHVKRFCMKFKEDFEKGN------NIANVATGEERIEEFLACKLN 219
            GH    C   K++    N        ANVAT E  +++ L C L+
Sbjct: 1120 GHFSNQCKAPKKNKSHKNKKRDDDESANVATDE--LDDALICSLD 1157

BLAST of Moc03g00600 vs. NCBI nr
Match: KAG7561662.1 (Zinc finger CCHC-type superfamily [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 129.8 bits (325), Expect = 3.4e-26
Identity = 86/244 (35.25%), Postives = 130/244 (53.28%), Query Frame = 0

Query: 2   NICSLVAKETTTKELLKALQDMYEKPSANTKILLWTEYFNIHMDKGTSVNSHINKLIDIL 61
           N+   VAKE TT+ L+K L DMYEKPSAN K+ L  + F++ M++G  V +H+N+   I+
Sbjct: 69  NVAHNVAKEKTTEGLMKVLSDMYEKPSANNKVFLMKKLFHLKMEEGGPVATHVNEFNTIV 128

Query: 62  NKLEGMSVKIEEEVKAMRLLTSLPDSWEMMKTAMSNSLGENSLKFSVICDAALFEEARRK 121
           N+L  + ++ ++EV+A+ L+ SLP+SWE M+ A+SNS+G   LKF  + D  L EE RR 
Sbjct: 129 NQLSSVEIEFDDEVRALILIASLPNSWEPMRAAVSNSVGNQKLKFVDVRDRILGEEVRR- 188

Query: 122 LGKMYASTSEVKNGVESALVVQNKGKTKMNYN---GKRQQRYNRSSESSNGEVKCYYCHK 181
                  T E      SA  V+N+G+ +   N   G+ + R  +    S   V+C+ C K
Sbjct: 189 -----IDTGE--TSTSSAFNVENRGRDQNRRNQNRGRSKSRNGKGQSKSRKPVECWNCGK 248

Query: 182 KGHVKRFC-MKFKEDFEKGNNIANVATGEERIEEFLACKLNRESKVVATGHKRTSVYVSE 241
            GH K  C    K++  KG   AN  T E      ++    R+ +   T    T   +S 
Sbjct: 249 TGHFKSNCWAPPKKENNKGGG-ANAVTDEIADALLVSVDSPRKGETHDTAVNTTKASISY 303

BLAST of Moc03g00600 vs. NCBI nr
Match: KAE8728571.1 (hypothetical protein F3Y22_tig00004205pilonHSYRG00041 [Hibiscus syriacus])

HSP 1 Score: 129.4 bits (324), Expect = 4.5e-26
Identity = 80/192 (41.67%), Postives = 112/192 (58.33%), Query Frame = 0

Query: 2   NICSLVAKETTTKELLKALQDMYEKPSANTKILLWTEYFNIHMDKGTSVNSHINKLIDIL 61
           N+   +AKE TT  L+ AL  MYEKPSA+ K+ L    FN+ M +G SV  H+N+L  I 
Sbjct: 83  NVAFNIAKEKTTAGLMAALSSMYEKPSASNKVHLMRRLFNLRMTEGASVAQHLNELNTIT 142

Query: 62  NKLEGMSVKIEEEVKAMRLLTSLPDSWEMMKTAMSNSLGENSLKFSVICDAALFEEARRK 121
            +L  + ++ ++EV+A+ LL+SLPDSW    TA+S+S G + LKF  + D  L EE RR+
Sbjct: 143 TQLSSVEIEFDDEVRALILLSSLPDSWNATVTAVSSSSGNSKLKFDDVRDLVLSEEIRRR 202

Query: 122 LGKMYASTSEVKNGVESALVVQNKGKT-KMNYNGKRQQRYNRSSESSNGEVKCYYCHKKG 181
                ASTS       SAL  +++G+T + N N  R +     S + N +  CY C KKG
Sbjct: 203 -ESGEASTS-------SALHTESRGRTSERNSNRGRSKSRRGKSRTGNKDFTCYNCGKKG 262

Query: 182 HVKRFCMKFKED 193
           H KR C   K+D
Sbjct: 263 HFKRDCRALKKD 266

BLAST of Moc03g00600 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.8e-12
Identity = 50/188 (26.60%), Postives = 92/188 (48.94%), Query Frame = 0

Query: 2   NICSLVAKETTTKELLKALQDMYEKPSANTKILLWTEYFNIHMDKGTSVNSHINKLIDIL 61
           ++ + +  E T + +   L+ +Y   +   K+ L  + + +HM +GT+  SH+N    ++
Sbjct: 70  DVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHLNVFNGLI 129

Query: 62  NKLEGMSVKIEEEVKAMRLLTSLPDSWEMMKTAMSNSLGENSLKFSVICDAALFEEARRK 121
            +L  + VKIEEE KA+ LL SLP S++ + T + +  G+ +++   +  A L  E  RK
Sbjct: 130 TQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILH--GKTTIELKDVTSALLLNEKMRK 189

Query: 122 LGKMYASTSEVKNGVESALVVQNKGKT---KMNYNGKRQQRYNRSSESSNGEVKCYYCHK 181
             +              AL+ + +G++     N  G+   R    + S +    CY C++
Sbjct: 190 KPENQG----------QALITEGRGRSYQRSSNNYGRSGARGKSKNRSKSRVRNCYNCNQ 245

Query: 182 KGHVKRFC 187
            GH KR C
Sbjct: 250 PGHFKRDC 245

BLAST of Moc03g00600 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 60.5 bits (145), Expect = 3.3e-08
Identity = 52/220 (23.64%), Postives = 104/220 (47.27%), Query Frame = 0

Query: 5   SLVAKETTTKELLKALQDMYEKPSANTKILLWTEYFNIHMDKGTSVNSHINKLIDILNKL 64
           +    + T +++L+ L  +YE+ S  +++ L     ++ +    S+ SH +   +++++L
Sbjct: 69  NFATSDITARQILENLDAVYERKSLASQLALRKRLLSLKLSSEMSLLSHFHIFDELISEL 128

Query: 65  EGMSVKIEEEVKAMRLLTSLPDSWEMMKTAMSNSLGENSLKFSVICDAALFEEARRKLGK 124
                KIEE  K   LL +LP  ++ + TA+  +L E +L  + + +  L +E      K
Sbjct: 129 LAAGAKIEEMDKISHLLITLPSCYDGIITAI-ETLSEENLTLAFVKNRLLDQEI-----K 188

Query: 125 MYASTSEVKNGVESALVVQNKGKTKMNYNGKRQQRYNRSSE-SSNGEVKCYYCHKKGHVK 184
           +    ++    V +A+V  N    K N    R  +  +  + +S  +VKC++C ++GH+K
Sbjct: 189 IKNDHNDTSKKVMNAIVHNNNNTYKNNLFKNRVTKPKKIFKGNSKYKVKCHHCGREGHIK 248

Query: 185 RFCMKFKEDFEKGN--NIANVATGEERIEEFLACKLNRES 222
           + C  +K      N  N   V T       F+  ++N  S
Sbjct: 249 KDCFHYKRILNNKNKENEKQVQTATSHGIAFMVKEVNNTS 282

BLAST of Moc03g00600 vs. ExPASy TrEMBL
Match: A0A0D3AEM1 (CCHC-type domain-containing protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.8e-28
Identity = 89/229 (38.86%), Postives = 131/229 (57.21%), Query Frame = 0

Query: 2   NICSLVAKETTTKELLKALQDMYEKPSANTKILLWTEYFNIHMDKGTSVNSHINKLIDIL 61
           N+   V KE TT+ L+K L DMYEKPSAN+K+ L  + F++ M++G  V +HIN+   I+
Sbjct: 69  NVAHNVVKEKTTEGLMKVLSDMYEKPSANSKVFLMKKLFHLKMEEGGLVTAHINEFNTIV 128

Query: 62  NKLEGMSVKIEEEVKAMRLLTSLPDSWEMMKTAMSNSLGENSLKFSVICDAALFEEARRK 121
           N+L  + ++ E+EV+A+ LL SLP+SWE M+ A+SNS+G   LKF+ + D  L EE RR 
Sbjct: 129 NQLSSVEIEFEDEVRALILLASLPNSWESMRVAVSNSVGTQKLKFNDVRDRILAEEVRR- 188

Query: 122 LGKMYASTSEVKNGVESALVVQNKGKT---KMNYNGKRQQRYNRSSESSNGEVKCYYCHK 181
           +    ASTS       SA  V+N+G+        NG+ + R  R         +C+ C K
Sbjct: 189 IDSGEASTS-------SAFNVENRGRNPDRNNRSNGRSKSRNGRGQSKFRQPAECWNCGK 248

Query: 182 KGHVKRFCM--KFKEDFEKGNNIANVATGEERIEEFLACKLNRESKVVA 226
            GH+K+ C     KED  +G   AN  T E  I++ L   ++   K+ A
Sbjct: 249 IGHIKKNCRAPPKKEDNTRGG--ANAVTRE--IDDALVVSVDSPRKIEA 285

BLAST of Moc03g00600 vs. ExPASy TrEMBL
Match: A0A2N9IKI1 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS31378 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 6.7e-28
Identity = 85/222 (38.29%), Postives = 130/222 (58.56%), Query Frame = 0

Query: 7   VAKETTTKELLKALQDMYEKPSANTKILLWTEYFNIHMDKGTSVNSHINKLIDILNKLEG 66
           V KE TT EL+ AL  MYEKPSAN K+ L  + FN+ M +GT+V  H+N+   I N+L  
Sbjct: 75  VVKEKTTAELMTALCGMYEKPSANNKVHLMKKLFNLKMAEGTAVAQHLNEFNTITNQLSS 134

Query: 67  MSVKIEEEVKAMRLLTSLPDSWEMMKTAMSNSLGENSLKFSVICDAALFEEARRKLGKMY 126
           + ++ ++E++A+ +L SLP+SWE M+ A+SNS G+  LK++ I D  L EE RR+     
Sbjct: 135 VEIEFDDEIRALIVLASLPNSWEAMRMAVSNSAGKGKLKYNDIRDLILGEEVRRRDAGET 194

Query: 127 ASTSEVKNGVESALVVQNKGKTKMNYN-GKRQQRYNRSSESSNGEVKCYYCHKKGHVKRF 186
           +S+    N     L  + +GK + NYN G+ + R  RS      +++C+ C K GH+++ 
Sbjct: 195 SSSGSALN-----LEARGRGKDR-NYNRGRSKSRKGRSKSKPGRQLECWNCGKTGHIRKN 254

Query: 187 CMKFKEDFEKGNNIANVATGEERIEEFLACKLNRESKVVATG 228
           C + K+  E  N+ ANV T E      L+     ES V+ +G
Sbjct: 255 CWELKKKNE--NDSANVVTEEVHDALLLSVDSPIESWVLDSG 288

BLAST of Moc03g00600 vs. ExPASy TrEMBL
Match: A0A2N9GHK9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26945 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 6.7e-28
Identity = 85/222 (38.29%), Postives = 130/222 (58.56%), Query Frame = 0

Query: 7   VAKETTTKELLKALQDMYEKPSANTKILLWTEYFNIHMDKGTSVNSHINKLIDILNKLEG 66
           V KE TT EL+ AL  MYEKPSAN K+ L  + FN+ M +GT+V  H+N+   I N+L  
Sbjct: 75  VVKEKTTAELMTALCGMYEKPSANNKVHLMKKLFNLKMAEGTAVAQHLNEFNTITNQLSS 134

Query: 67  MSVKIEEEVKAMRLLTSLPDSWEMMKTAMSNSLGENSLKFSVICDAALFEEARRKLGKMY 126
           + ++ ++E++A+ +L SLP+SWE M+ A+SNS G+  LK++ I D  L EE RR+     
Sbjct: 135 VEIEFDDEIRALIVLASLPNSWEAMRMAVSNSAGKGKLKYNDIRDLILGEEVRRRDAGET 194

Query: 127 ASTSEVKNGVESALVVQNKGKTKMNYN-GKRQQRYNRSSESSNGEVKCYYCHKKGHVKRF 186
           +S+    N     L  + +GK + NYN G+ + R  RS      +++C+ C K GH+++ 
Sbjct: 195 SSSGSALN-----LEARGRGKDR-NYNRGRSKSRKGRSKSKPGRQLECWNCGKTGHIRKN 254

Query: 187 CMKFKEDFEKGNNIANVATGEERIEEFLACKLNRESKVVATG 228
           C + K+  E  N+ ANV T E      L+     ES V+ +G
Sbjct: 255 CWELKKKNE--NDSANVVTEEVHDALLLSVDSPIESWVLDSG 288

BLAST of Moc03g00600 vs. ExPASy TrEMBL
Match: A0A2N9J3Y8 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS59166 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 6.7e-28
Identity = 85/222 (38.29%), Postives = 130/222 (58.56%), Query Frame = 0

Query: 7   VAKETTTKELLKALQDMYEKPSANTKILLWTEYFNIHMDKGTSVNSHINKLIDILNKLEG 66
           V KE TT EL+ AL  MYEKPSAN K+ L  + FN+ M +GT+V  H+N+   I N+L  
Sbjct: 75  VVKEKTTAELMTALCGMYEKPSANNKVHLMKKLFNLKMAEGTAVAQHLNEFNTITNQLSS 134

Query: 67  MSVKIEEEVKAMRLLTSLPDSWEMMKTAMSNSLGENSLKFSVICDAALFEEARRKLGKMY 126
           + ++ ++E++A+ +L SLP+SWE M+ A+SNS G+  LK++ I D  L EE RR+     
Sbjct: 135 VEIEFDDEIRALIVLASLPNSWEAMRMAVSNSAGKGKLKYNDIRDLILGEEVRRRDAGET 194

Query: 127 ASTSEVKNGVESALVVQNKGKTKMNYN-GKRQQRYNRSSESSNGEVKCYYCHKKGHVKRF 186
           +S+    N     L  + +GK + NYN G+ + R  RS      +++C+ C K GH+++ 
Sbjct: 195 SSSGSALN-----LEARGRGKDR-NYNRGRSKSRKGRSKSKPGRQLECWNCGKTGHIRKN 254

Query: 187 CMKFKEDFEKGNNIANVATGEERIEEFLACKLNRESKVVATG 228
           C + K+  E  N+ ANV T E      L+     ES V+ +G
Sbjct: 255 CWELKKKNE--NDSANVVTEEVHDALLLSVDSPIESWVLDSG 288

BLAST of Moc03g00600 vs. ExPASy TrEMBL
Match: A0A2N9IPG8 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54280 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 6.7e-28
Identity = 85/222 (38.29%), Postives = 130/222 (58.56%), Query Frame = 0

Query: 7   VAKETTTKELLKALQDMYEKPSANTKILLWTEYFNIHMDKGTSVNSHINKLIDILNKLEG 66
           V KE TT EL+ AL  MYEKPSAN K+ L  + FN+ M +GT+V  H+N+   I N+L  
Sbjct: 75  VVKEKTTAELMTALCGMYEKPSANNKVHLMKKLFNLKMAEGTAVAQHLNEFNTITNQLSS 134

Query: 67  MSVKIEEEVKAMRLLTSLPDSWEMMKTAMSNSLGENSLKFSVICDAALFEEARRKLGKMY 126
           + ++ ++E++A+ +L SLP+SWE M+ A+SNS G+  LK++ I D  L EE RR+     
Sbjct: 135 VEIEFDDEIRALIVLASLPNSWEAMRMAVSNSAGKGKLKYNDIRDLILGEEVRRRDAGET 194

Query: 127 ASTSEVKNGVESALVVQNKGKTKMNYN-GKRQQRYNRSSESSNGEVKCYYCHKKGHVKRF 186
           +S+    N     L  + +GK + NYN G+ + R  RS      +++C+ C K GH+++ 
Sbjct: 195 SSSGSALN-----LEARGRGKDR-NYNRGRSKSRKGRSKSKPGRQLECWNCGKTGHIRKN 254

Query: 187 CMKFKEDFEKGNNIANVATGEERIEEFLACKLNRESKVVATG 228
           C + K+  E  N+ ANV T E      L+     ES V+ +G
Sbjct: 255 CWELKKKNE--NDSANVVTEEVHDALLLSVDSPIESWVLDSG 288

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RVW44710.12.0e-2636.80Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera][more]
KAG7584790.12.6e-2639.23Zinc finger CCHC-type superfamily [Arabidopsis thaliana x Arabidopsis arenosa][more]
RZC29599.12.6e-2639.56Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Glycine soja][more]
KAG7561662.13.4e-2635.25Zinc finger CCHC-type superfamily [Arabidopsis thaliana x Arabidopsis arenosa][more]
KAE8728571.14.5e-2641.67hypothetical protein F3Y22_tig00004205pilonHSYRG00041 [Hibiscus syriacus][more]
Match NameE-valueIdentityDescription
P109783.8e-1226.60Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
P041463.3e-0823.64Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
Match NameE-valueIdentityDescription
A0A0D3AEM11.8e-2838.86CCHC-type domain-containing protein OS=Brassica oleracea var. oleracea OX=109376... [more]
A0A2N9IKI16.7e-2838.29Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS31378 PE=4 SV=1[more]
A0A2N9GHK96.7e-2838.29Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26945 PE=4 SV=1[more]
A0A2N9J3Y86.7e-2838.29Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS59166 PE=4 SV=1[more]
A0A2N9IPG86.7e-2838.29Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54280 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D4.10.60.10coord: 139..198
e-value: 4.9E-6
score: 28.3
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 5..121
e-value: 2.8E-24
score: 85.4
NoneNo IPR availablePANTHERPTHR34676:SF1ZINC FINGER, CCHC-TYPE, TUBBY C-TERMINAL-LIKE DOMAIN PROTEIN-RELATEDcoord: 8..206
NoneNo IPR availablePANTHERPTHR34676FAMILY NOT NAMEDcoord: 8..206
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 172..186
score: 8.531888
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 152..194

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc03g00600.1Moc03g00600.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0016740 transferase activity
molecular_function GO:0008270 zinc ion binding