Moc02g17680 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc02g17680
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Descriptionmitochondrial import inner membrane translocase subunit PAM16 like 2-like isoform X2
Locationchr2: 13233668 .. 13234212 (+)
RNA-Seq ExpressionMoc02g17680
SyntenyMoc02g17680
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTCTCTTCAAGATTTGGATGAGGTTCCTTGATGATAATGAGGGTTTTCGACAATATCGATGGAGAAAGAGATGGAGCCTCTTATGGTGCTTGGACTGCCCGAGGGCTCGAAGGACCTTTGAGATAAGCTCAACAGAGGTCGATCTCGACGCGAAGCGATCAACTCCAACGCGGAATCTCAAAGCAGTACCGAGACATCTAGTCGACCGAGATGGTCCCATGTTGGGATCCGCCAGGAAGAACTAGACCGAGTGAAGGAAGAGATCTTCAACTGGATGAAAACCGAGCTCGTGGTTGGAGGTTGCAGACCCACCACTCAATACGAACCCTCGAAGATCGCTCAAGAGTCATTCACGGCTAGCATCCTAGTCGTGAAGCTTCCAAAGGGGTTCAAGGGCCAGCTTATCGACAAGTACGACAGGTCCGCAGATCTCGTGGATCACGCCACCTCATACCATGACGCTATGAGGCAGGGCGGGTACAATAATGCCAAACAATGTTGGGGCTTCTCTAGAACCCTCATAGACCCTGCCCGGCAATGA

mRNA sequence

ATGTTTCTCTTCAAGATTTGGATGAGGTTCCTTGATGATAATGAGGGTTTTCGACAATATCGATGGAGAAAGAGATGGAGCCTCTTATGGTGCTTGGACTGCCCGAGGGCTCGAAGGACCTTTGAGATAAGCTCAACAGAGGTCGATCTCGACGCGAAGCGATCAACTCCAACGCGGAATCTCAAAGCAGTACCGAGACATCTAGTCGACCGAGATGGTCCCATACCCACCACTCAATACGAACCCTCGAAGATCGCTCAAGAGTCATTCACGGCTAGCATCCTAGTCGTGAAGCTTCCAAAGGGGTTCAAGGGCCAGCTTATCGACAAGTACGACAGGTCCGCAGATCTCGTGGATCACGCCACCTCATACCATGACGCTATGAGGCAGGGCGGGTACAATAATGCCAAACAATGTTGGGGCTTCTCTAGAACCCTCATAGACCCTGCCCGGCAATGA

Coding sequence (CDS)

ATGTTTCTCTTCAAGATTTGGATGAGGTTCCTTGATGATAATGAGGGTTTTCGACAATATCGATGGAGAAAGAGATGGAGCCTCTTATGGTGCTTGGACTGCCCGAGGGCTCGAAGGACCTTTGAGATAAGCTCAACAGAGGTCGATCTCGACGCGAAGCGATCAACTCCAACGCGGAATCTCAAAGCAGTACCGAGACATCTAGTCGACCGAGATGGTCCCATACCCACCACTCAATACGAACCCTCGAAGATCGCTCAAGAGTCATTCACGGCTAGCATCCTAGTCGTGAAGCTTCCAAAGGGGTTCAAGGGCCAGCTTATCGACAAGTACGACAGGTCCGCAGATCTCGTGGATCACGCCACCTCATACCATGACGCTATGAGGCAGGGCGGGTACAATAATGCCAAACAATGTTGGGGCTTCTCTAGAACCCTCATAGACCCTGCCCGGCAATGA

Protein sequence

MFLFKIWMRFLDDNEGFRQYRWRKRWSLLWCLDCPRARRTFEISSTEVDLDAKRSTPTRNLKAVPRHLVDRDGPIPTTQYEPSKIAQESFTASILVVKLPKGFKGQLIDKYDRSADLVDHATSYHDAMRQGGYNNAKQCWGFSRTLIDPARQ
Homology
[Close]
BLAST of Moc02g17680 vs. NCBI nr
Match: XP_022157396.1 (mitochondrial import inner membrane translocase subunit Tim16-like isoform X1 [Momordica charantia])

HSP 1 Score: 79.0 bits (193), Expect = 4.0e-11
Identity = 38/62 (61.29%), Postives = 44/62 (70.97%), Query Frame = 0 

Query: 77  TTQYEPSKIAQESFTASILVVKLPKGFKGQLIDKYDRSADLVDHATSYHDAMRQGGYNNA 136
           T  YEP +IAQE FT ++LV++L KGFKG  IDKYD S D VDHATSYHDAMR       
Sbjct: 131 TIHYEPLEIAQELFTINVLVMQLLKGFKGPRIDKYDGSTDPVDHATSYHDAMRGSSITTL 190

Query: 137 KQ 139
           K+
Sbjct: 191 KK 192

[Close]
BLAST of Moc02g17680 vs. NCBI nr
Match: XP_022157397.1 (mitochondrial import inner membrane translocase subunit PAM16 like 2-like isoform X2 [Momordica charantia])

HSP 1 Score: 79.0 bits (193), Expect = 4.0e-11
Identity = 38/62 (61.29%), Postives = 44/62 (70.97%), Query Frame = 0 

Query: 77  TTQYEPSKIAQESFTASILVVKLPKGFKGQLIDKYDRSADLVDHATSYHDAMRQGGYNNA 136
           T  YEP +IAQE FT ++LV++L KGFKG  IDKYD S D VDHATSYHDAMR       
Sbjct: 123 TIHYEPLEIAQELFTINVLVMQLLKGFKGPRIDKYDGSTDPVDHATSYHDAMRGSSITTL 182

Query: 137 KQ 139
           K+
Sbjct: 183 KK 184

[Close]
BLAST of Moc02g17680 vs. NCBI nr
Match: XP_022864838.1 (uncharacterized protein LOC111384748 [Olea europaea var. sylvestris])

HSP 1 Score: 57.0 bits (136), Expect = 1.6e-04
Identity = 24/67 (35.82%), Postives = 38/67 (56.72%), Query Frame = 0 

Query: 85  IAQESFTASILVVKLPKGFKGQLIDKYDRSADLVDHATSYHDAMRQGGYNNAKQCWGFSR 144
           + ++ F + I+ + LPKGFK  +I+ YD+  D +DH  ++ D M+     +A  CW F  
Sbjct: 3   LEEDPFASKIMTIPLPKGFKQPMIEAYDKVTDSLDHLRTFVDLMKLYAAPDAVMCWSFPP 62

Query: 145 TLIDPAR 152
           TL   AR
Sbjct: 63  TLRREAR 69

[Close]
BLAST of Moc02g17680 vs. NCBI nr
Match: XP_022891892.1 (uncharacterized protein LOC111406746 [Olea europaea var. sylvestris])

HSP 1 Score: 56.2 bits (134), Expect = 2.8e-04
Identity = 28/67 (41.79%), Postives = 38/67 (56.72%), Query Frame = 0 

Query: 85  IAQESFTASILVVKLPKGFKGQLIDKYDRSADLVDHATSYHDAMRQGGYNNAKQCWGFSR 144
           + ++SF   I+ V LPKGFK  +I+ YD   DL+DH  ++ D MR     +A  C  FS 
Sbjct: 21  LEEDSFAPEIIAVPLPKGFKQPMIEVYDGVTDLLDHLCTFVDLMRLYVATDAVMCRSFSP 80

Query: 145 TLIDPAR 152
           TL   AR
Sbjct: 81  TLRREAR 87

[Close]
BLAST of Moc02g17680 vs. ExPASy TrEMBL
Match: A0A6J1DUD6 (mitochondrial import inner membrane translocase subunit PAM16 like 2-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111024104 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.0e-11
Identity = 38/62 (61.29%), Postives = 44/62 (70.97%), Query Frame = 0 

Query: 77  TTQYEPSKIAQESFTASILVVKLPKGFKGQLIDKYDRSADLVDHATSYHDAMRQGGYNNA 136
           T  YEP +IAQE FT ++LV++L KGFKG  IDKYD S D VDHATSYHDAMR       
Sbjct: 123 TIHYEPLEIAQELFTINVLVMQLLKGFKGPRIDKYDGSTDPVDHATSYHDAMRGSSITTL 182

Query: 137 KQ 139
           K+
Sbjct: 183 KK 184

[Close]
BLAST of Moc02g17680 vs. ExPASy TrEMBL
Match: A0A6J1DXY4 (mitochondrial import inner membrane translocase subunit Tim16-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111024104 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.0e-11
Identity = 38/62 (61.29%), Postives = 44/62 (70.97%), Query Frame = 0 

Query: 77  TTQYEPSKIAQESFTASILVVKLPKGFKGQLIDKYDRSADLVDHATSYHDAMRQGGYNNA 136
           T  YEP +IAQE FT ++LV++L KGFKG  IDKYD S D VDHATSYHDAMR       
Sbjct: 131 TIHYEPLEIAQELFTINVLVMQLLKGFKGPRIDKYDGSTDPVDHATSYHDAMRGSSITTL 190

Query: 137 KQ 139
           K+
Sbjct: 191 KK 192

The following BLAST results are available for this feature:
BLAST of Moc02g17680 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022157396.14.0e-1161.29mitochondrial import inner membrane translocase subunit Tim16-like isoform X1 [M... [more]
XP_022157397.14.0e-1161.29mitochondrial import inner membrane translocase subunit PAM16 like 2-like isofor... [more]
XP_022864838.11.6e-0435.82uncharacterized protein LOC111384748 [Olea europaea var. sylvestris][more]
XP_022891892.12.8e-0441.79uncharacterized protein LOC111406746 [Olea europaea var. sylvestris][more]
BLAST of Moc02g17680 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc02g17680 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DUD62.0e-1161.29mitochondrial import inner membrane translocase subunit PAM16 like 2-like isofor... [more]
A0A6J1DXY42.0e-1161.29mitochondrial import inner membrane translocase subunit Tim16-like isoform X1 OS... [more]
BLAST of Moc02g17680 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc02g17680.1Moc02g17680.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
cellular_component GO:0005739 mitochondrion