Moc02g17600 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc02g17600
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionReverse transcriptase domain-containing protein
Locationchr2: 13184153 .. 13188568 (+)
RNA-Seq ExpressionMoc02g17600
SyntenyMoc02g17600
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAATCCTCTCCCAGTCTTGGAGATACTCTTGTGCAGTGTCATAGTCTCCTGAATATGCTCCATTCTCAGCTCTCTCTCGCTAAGAATGACTCCAGAGCCTCTTCCCATGTTGCAGCTACATGCTCCTTAATACCTCATGGTTCGTTAAAATTTTGGATTATTGATTCTGGTGCTTCTGCACATATATGTTTCTCTCGCGACTGCTTTGTCTCTTTGCATCCCGTTTGTGCTTCAGTCACTTTACTAGATAAAAAGCATATTATTGTTCGCCATATGGGTACAATTATGTTGACTCCTTCCTTGTGGATTCATGGTGTTATATATACCGGGGTTTCAATACAATCTCCTTTCAGTTAGCGCGCTTTTACAGGGTGATTTTGTGTCTATATAATTTTCTAATGCTTCTTGCCTCATTCAAGACAAGTCCACTTTGAGGACGATTGGCAAGGCTAGACTGTCTAATGGATTGTACATGCTTGACACCTCGACATTTCCAGTTGACACCTCTTTTTCTCATGCTGTTTGCGCATCTTTGACTTTCCGATCGTGTGCTATTTTGTGGCACCATAGGCTTGGTCATCCATCTTTTAGTTGTTTAAATTCTTTACAAACTGCTTTGCATTTACCCTTGTTGCAATATGATGATTCTGAATATTGTGACATTTGTCCTTTGGCTAAGCAGCAACGTTTATCGTTTATTTCGAATAACAATTTTTCTCCTCATGTTTTTGATCTTGTTCATGCGGATGTTTGGGGACCTCTTTCTACACCAACTTATGCTGGACATTCTTATTTTTTTAACTATTGTTGATGATGCTACTCGCTATACATGAGTTTTTATGCTTAAAAATAAGTCAGACGTTCTACATATTGTCCCTCGTTTTTTTAAGCTTGAAGAGACTTAATTTGGTAAATGCATCAAGCAGTTTTGTTCGGATAATGCACTTGAGCTTCGGTTTGATGACTTTTTTTGCTTCTAAAGGTGTTCTTCATCAATTTTCATGTGTTGGTCGTCCTCAACAAAATTCTGTTGTTGAGTGGAAACATCAACATATATTGAATGTTGCACGGGCTCTTTATTTCCAATCACGCATTCTTATCCGTTTTTGAGGTGATTGTATTCTTACTGTAATGTTTCTTATTAATCACATCACCTGTGTTGTCTTGGCGCACTCCTTTTGAATTGCTTCAAAGACTCTGCCTGATTTTGGACATCTTCGTGTTTTTGGTTGTCTCTGTTTCGCTTTTACACTTACTGCTAATCGATCTAAATTTCAACCATGGGCTGTTCCAGCTATTTTTATTGGGTATCCACCTGGAATGAAAGCATACAGGGCTATATGACATATCCGATTAGAAATTTTTTATTTCCCGTGATGTTTTATTTCATGAGGATGTTTTCCCCTCTCACAAAGTTACTGAGAAAGTGGCATTTCTGACTCATTTCCTGGTTTTGTTTTACCCAAGTTCTTCATTGTGGCAGTGATTTGTCCCATCTTCTCACTAACTCTGGTGTTGTACAGTCTGCTTCCGATTTGACTTCACTGGCCGTTGACATATCTGACCAGCCGGTAGTCGCAGCTTCAACTCCGCCGGCCGCCTTGTTTGATGCTTCGCCGCCCCTTGCACATTCTTCCTCGTCGACACCTGTGCTTCCGTCGGACCCATCGGCCGCTGCCGCTCGTTCCAGCTCCACCTCAACTCCGTTGGACCTATCAGACCCATCGTCGGCCCCCGCTCCGCCAGCTGTAGCAACACCGGACCCGCCATCCATCGTAGCGGTACCCGACCCGTTGGCTGTCGCAGTTCTAGTTCCACCGACCCTTCTTGTTCCAGGTCCGCCGGCCGTTCCTATTCTCGGGTCGTCGGCCCTTGCCGCTCCCGATTTGTCGGTCACACCGAACAGCCGCCCCTTCGTTCAGTTGCTGTCCAGCCGCCTGCCATGCCTATTTTACAGCCTATTCTATGAGCTACAACACCACATAATAAGGTTTTGGACCTTTTTGATACAACTTTACATTATGATACTTGTCAGGATATAGTACCTCATGAGTTGTCCACTTCATCCCTGAATGAAGCCTCTGAAACATCTGGTACAACATTAACTCTTGCACCACAACAAGGTTTTCGTTTTTCTACACGCCTCAAGCCTCCTCCTCATTTAAAGGACTATCATTGTAGTCTTCTTTATTCTACAATTTTGCCTGACACTTCTATCAGATATCCTTTACAAAGTTTGTGTCTTACACTCGACTTTCTTCTGCTGTTCATCCTACTATGATTCTTAATGTTTCTGCTAATTTTGAGCCTCAGTTTTATCATCAAGTGGTGGGTTTTGAGCATGCAATGGAGGACAATCATACTTGGAGTGTTGTTTCTCTCTCCTCCAGTAAGCATACTATTGGGTGTAAGTGGATTTTTAAAATTAAGCATCGTGCTGATGGCTCTATTGAGCGCTATGAAGCCCGTTTAGTAGCCAAGGGGTACACACAATAGGAAGGTTTGGATTTTTTGCAAACTTTTTCTCTGGTAGCTAAATTGGTTACTCTTAAAACTCTTTTTACTGTTGTTGTGTATGGACTTGCATCTCGGATATAAACCCCCTATTTCTGTCAATGGTGATCAGTTGGTATGCAAATTACATAAATCGCTTTATGGCCTCAAGCAAGCTTCTCGCCAATGGTTTGCAAAATTTTCATAATTTTTACTATCTCTTGGTTTTCGACAATCAAAGGGTGATTATTCATTGTTTGTGAAGGGTGATGGGGCTTCGTTTCTTGTTTTACTTTTGATGATATAATTATTACTGGGATGTCTATTTCAGCCATTAATAACCTGAAGGCGCTTCGTCATGCTCAATTCAAACTCAAGGATCTTGGTTCTCTAAAATATTTTCTTGGTCTTGAGCTTGCTCGGTCCTCTTCAGGCATTTTTATTTCTCAACGTCATTACACATTATAGTTAGTTGAAGACACTGGATTTCTTGGTTGCATGCCTAATTTTGTTCCTGTGAATCCTTGCTTGAAGTTGTGTTCTTCTGATGTTGATTTGCTTACTGATCCTTTGATATTTCGTCGTCTCATTGGACGGTTTTTATACTTGACCATTTCTCGTCCTGATATCACTTTTGCTGTGCATCGGCTTAGTTAGTTCATGTCTAGCCCTTGTAATTCGCATCTTGCAGCGGCTCATGACTTGTTGCGGTATTTGAAGACCTCTCCTGGTCAAGGTATGTTTCTTCCTATGGTTTCTTGTTTTCAAATACCAGCTTTTGCCGATGCCGATTGGGGTGCTTGTTTGGATACGCAGCGTTCTGTCACTGGGTTTTGTGTTTTTCTTGGCGATTCTTTGGTTTCTTGGACTGAATACTGTTTCTCGCTCGTCTGCTGAGGCTGAGTATCGTGCTTTTTCAGTCGCTGCTTGCAAAGTTTGTTTGGCATGATCTTCGTATTTCTTTTGAGCTCCCTGCAGTGTTTTTTTTTGTGATAATCAATCTGCTATTCGTCTTGCCTCCAATCCTGTTTTTCACGTGCATACCAAACATATCGAGTTGGATTGCCATTTTATTAGGGTAAAGATTGTTGCAGAAACTATTAAGCTTCTTCCTGTTTGCTCTAGTCTTCAACTTGCCGATCCGTTTACAAAGTCGTTGCTTGCTTCCCGTCTTTTTTCTGCTCTTGTCCAAGATGGGCGTTTTAGATATCCACCGTCCATCTTCAGGGGCGTATTACGAATAGATATTTTGTTAACTACTTACCTTTCTGTTCCTATATTTTTGTTATTAAGTTACTCTAGGTAGTTGTGCAGTTATACGAGTTGTATTATCAAATTAATTTAGATCAATCAAATATTTTTCTCTACGGATTCTTCTTTCCATATTAGTTCAATAATACTCAAAATCAATTGATAACGAGAGGGATAGCTTATGTATTTACAAACGTCGCTCGATCTTCTTTTCTTGGAGCGAAGAGTAAAAGGAATGCATGTACGTATGGAGGAGCCTGATTTGGGGGAAAGGAAAATTTACTTTCTGGATCGCGTTGGCACGTTGGGAATGGCCAAAGTATCCATATTGATAGAGACAAATGGATACCAAACAGAGAGGTAGCTTTGCATCGATTTTCTATGAATACGAACAGAAATCTGATGGTTGCTAATTTAATAGACCCAAGTGGACATTGGAATGAGCCTTTAATCCGAGAGTTGTTGGACGAGGACGAGGTTGATGGAATTTTGAGTATTGTTCTCCCCAGAACTAATCAACCGTTTAAAATCACGTGGAGTCTCACGAAAAATGGGATGTTCACCGTGAAAAGTGCCTACCGTGCATTTAGCCAATTCAAGGAAGCCGAGACCGAGTACGTCAAATTCAAAAATTATGGAGACATGGTGGAAATGGTTGTGGAATGCTAA

mRNA sequence

ATGCAATCCTCTCCCAGTCTTGGAGATACTCTTGTGCAGTGTCATAGTCTCCTGAATATGCTCCATTCTCAGCTCTCTCTCGCTAAGAATGACTCCAGAGCCTCTTCCCATGTTGCAGCTACATGCTCCTTAATACCTCATGGTTCGTTAAAATTTTGGATTATTGATTCTGGTGCTTCTGCACATATATGTTTCTCTCGCGACTGCTTTGTCTCTTTGCATCCCGTTTGTGCTTCAGTCACTTTACTAGATAAAAAGCATATTATTGTTCGCCATATGGTTCTTCATTGTGGCAGTGATTTGTCCCATCTTCTCACTAACTCTGGTGTTGTACAGTCTGCTTCCGATTTGACTTCACTGGCCGTTGACATATCTGACCAGCCGGTAGTCGCAGCTTCAACTCCGCCGGCCGCCTTGTTTGATGCTTCGCCGCCCCTTGCACATTCTTCCTCGTCGACACCTGTGCTTCCGTCGGACCCATCGGCCGCTGCCGCTCGTTCCAGCTCCACCTCAACTCCGTTGGACCTATCAGACCCATCGTCGGCCCCCGCTCCGCCAGCTGTAGCAACACCGGACCCGCCATCCATCGTAGCGGTACCCGACCCGTTGGCTGTCGCAGTTCTAGTTCCACCGACCCTTCTTGTTCCAGGTCCGCCGGCCGTTCCTATTCTCGGGTCGTCGGCCCTTGCCGCTCCCGATTTGTCGGTCACACCGAACAGCCGCCCCTTCGTTCAGTTGCTGTCCAGCCGCCTGCCATGCCTATTTTACAGCCTATTCTATGAGCTACAACACCACATAATAAGAAATCTGATGGTTGCTAATTTAATAGACCCAAGTGGACATTGGAATGAGCCTTTAATCCGAGAGTTGTTGGACGAGGACGAGGTTGATGGAATTTTGAGTATTGTTCTCCCCAGAACTAATCAACCGTTTAAAATCACGTGGAGTCTCACGAAAAATGGGATGTTCACCGTGAAAAGTGCCTACCGTGCATTTAGCCAATTCAAGGAAGCCGAGACCGAGTACGTCAAATTCAAAAATTATGGAGACATGGTGGAAATGGTTGTGGAATGCTAA

Coding sequence (CDS)

ATGCAATCCTCTCCCAGTCTTGGAGATACTCTTGTGCAGTGTCATAGTCTCCTGAATATGCTCCATTCTCAGCTCTCTCTCGCTAAGAATGACTCCAGAGCCTCTTCCCATGTTGCAGCTACATGCTCCTTAATACCTCATGGTTCGTTAAAATTTTGGATTATTGATTCTGGTGCTTCTGCACATATATGTTTCTCTCGCGACTGCTTTGTCTCTTTGCATCCCGTTTGTGCTTCAGTCACTTTACTAGATAAAAAGCATATTATTGTTCGCCATATGGTTCTTCATTGTGGCAGTGATTTGTCCCATCTTCTCACTAACTCTGGTGTTGTACAGTCTGCTTCCGATTTGACTTCACTGGCCGTTGACATATCTGACCAGCCGGTAGTCGCAGCTTCAACTCCGCCGGCCGCCTTGTTTGATGCTTCGCCGCCCCTTGCACATTCTTCCTCGTCGACACCTGTGCTTCCGTCGGACCCATCGGCCGCTGCCGCTCGTTCCAGCTCCACCTCAACTCCGTTGGACCTATCAGACCCATCGTCGGCCCCCGCTCCGCCAGCTGTAGCAACACCGGACCCGCCATCCATCGTAGCGGTACCCGACCCGTTGGCTGTCGCAGTTCTAGTTCCACCGACCCTTCTTGTTCCAGGTCCGCCGGCCGTTCCTATTCTCGGGTCGTCGGCCCTTGCCGCTCCCGATTTGTCGGTCACACCGAACAGCCGCCCCTTCGTTCAGTTGCTGTCCAGCCGCCTGCCATGCCTATTTTACAGCCTATTCTATGAGCTACAACACCACATAATAAGAAATCTGATGGTTGCTAATTTAATAGACCCAAGTGGACATTGGAATGAGCCTTTAATCCGAGAGTTGTTGGACGAGGACGAGGTTGATGGAATTTTGAGTATTGTTCTCCCCAGAACTAATCAACCGTTTAAAATCACGTGGAGTCTCACGAAAAATGGGATGTTCACCGTGAAAAGTGCCTACCGTGCATTTAGCCAATTCAAGGAAGCCGAGACCGAGTACGTCAAATTCAAAAATTATGGAGACATGGTGGAAATGGTTGTGGAATGCTAA

Protein sequence

MQSSPSLGDTLVQCHSLLNMLHSQLSLAKNDSRASSHVAATCSLIPHGSLKFWIIDSGASAHICFSRDCFVSLHPVCASVTLLDKKHIIVRHMVLHCGSDLSHLLTNSGVVQSASDLTSLAVDISDQPVVAASTPPAALFDASPPLAHSSSSTPVLPSDPSAAAARSSSTSTPLDLSDPSSAPAPPAVATPDPPSIVAVPDPLAVAVLVPPTLLVPGPPAVPILGSSALAAPDLSVTPNSRPFVQLLSSRLPCLFYSLFYELQHHIIRNLMVANLIDPSGHWNEPLIRELLDEDEVDGILSIVLPRTNQPFKITWSLTKNGMFTVKSAYRAFSQFKEAETEYVKFKNYGDMVEMVVEC
Homology
BLAST of Moc02g17600 vs. NCBI nr
Match: XP_022150855.1 (uncharacterized protein LOC111018899 [Momordica charantia])

HSP 1 Score: 127.1 bits (318), Expect = 3.0e-25
Identity = 102/217 (47.00%), Postives = 108/217 (49.77%), Query Frame = 0

Query: 60  SAHICFSRDCFVSLHPVCASVTLLDKKHIIVRHMVLHCGSDLSHLLTNSGVVQS------ 119
           S  + F  D F   H V     + D  H  V   VLHCGSDLSHL TNS VVQS      
Sbjct: 82  SRDVVFHEDVF-PFHKVTEKDGISDPFHGFVSPKVLHCGSDLSHLPTNSSVVQSDGCLRT 141

Query: 120 --------------------------------ASDLTSLAVDISDQPVVAASTPPAALFD 179
                                           A DL SLAVDISD  VVAA TP A LFD
Sbjct: 142 FYGHTASPLVCKDPATVPLPTLSPTADTAWPLAPDLISLAVDISDPLVVAAPTPLANLFD 201

Query: 180 ASPPLAHSSSSTPVLPSDPSAAAARSSSTSTPLDLSDPSSAPAPPAVATPDPPSIVAVPD 239
           +SP LAH SS  PVLPSDPSAAA                  P PP V   DPP+I  VPD
Sbjct: 202 SSPALAHPSSMVPVLPSDPSAAA-----------------TPTPPVVTASDPPTITTVPD 261

BLAST of Moc02g17600 vs. NCBI nr
Match: XP_042972999.1 (uncharacterized protein LOC122304801 [Carya illinoinensis])

HSP 1 Score: 65.9 bits (159), Expect = 8.3e-07
Identity = 32/69 (46.38%), Postives = 44/69 (63.77%), Query Frame = 0

Query: 272 VANLIDPSGHWNEPLIRELLDEDEVDGILSIVLPRTNQPFKITWSLTKNGMFTVKSAYRA 331
           V  LIDPSG W E LIRE+ +EDE   I S+ + ++  P K  W LTK+G+F+V+SAY  
Sbjct: 594 VQELIDPSGVWKEELIREIFNEDEAKVICSLPISQSGMPDKQIWGLTKDGIFSVRSAYHL 653

Query: 332 FSQFKEAET 341
               K+ E+
Sbjct: 654 EVSRKKRES 662

BLAST of Moc02g17600 vs. NCBI nr
Match: XP_033135982.1 (uncharacterized protein LOC103841762 [Brassica rapa])

HSP 1 Score: 60.1 bits (144), Expect = 4.6e-05
Identity = 33/78 (42.31%), Postives = 45/78 (57.69%), Query Frame = 0

Query: 263 QHHIIRNLMVANLIDP-SGHWNEPLIRELLDEDEVDGILSIVLPRTNQPFKITWSLTKNG 322
           QHH+  +L VA+LIDP S  WN  ++R+L+D  +V  I SI L R     +  W  T NG
Sbjct: 88  QHHLYPDLTVASLIDPTSRQWNSQVLRDLVDPHDVKIIESIPLSRHQMVDRDGWHFTHNG 147

Query: 323 MFTVKSAYRAFSQFKEAE 340
            FTVKS Y+    + + E
Sbjct: 148 KFTVKSGYQVERIYPDRE 165

BLAST of Moc02g17600 vs. NCBI nr
Match: KAF5462966.1 (hypothetical protein F2P56_018926 [Juglans regia])

HSP 1 Score: 58.9 bits (141), Expect = 1.0e-04
Identity = 32/71 (45.07%), Postives = 43/71 (60.56%), Query Frame = 0

Query: 270 LMVANLID-PSGHWNEPLIRELLDEDEVDGILSIVLPRTNQPFKITWSLTKNGMFTVKSA 329
           L+V+ LID  SG WN PL+REL   +EV  I    L  +N P K+ W  +K+GMF+VKSA
Sbjct: 663 LLVSTLIDKSSGGWNIPLLRELFVAEEVAIISRTPLSISNVPDKLVWRCSKDGMFSVKSA 722

Query: 330 YRAFSQFKEAE 340
           Y    + +  E
Sbjct: 723 YHLLGEMEATE 733

BLAST of Moc02g17600 vs. NCBI nr
Match: XP_040986468.1 (uncharacterized protein LOC121234565 [Juglans microcarpa x Juglans regia])

HSP 1 Score: 58.5 bits (140), Expect = 1.3e-04
Identity = 31/71 (43.66%), Postives = 41/71 (57.75%), Query Frame = 0

Query: 268 RNLMVANLID-PSGHWNEPLIRELLDEDEVDGILSIVLPRTNQPFKITWSLTKNGMFTVK 327
           ++  V  LID   G WNE +IR +  E+EV+ IL + L R     KI W  TK G+FTV+
Sbjct: 726 KDAKVEELIDRQKGEWNETMIRTIFSEEEVEQILCMPLSRGRAKDKIFWGPTKKGLFTVR 785

Query: 328 SAYRAFSQFKE 338
           SAY    + KE
Sbjct: 786 SAYFLHMELKE 796

BLAST of Moc02g17600 vs. ExPASy TrEMBL
Match: A0A6J1D9M2 (uncharacterized protein LOC111018899 OS=Momordica charantia OX=3673 GN=LOC111018899 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.5e-25
Identity = 102/217 (47.00%), Postives = 108/217 (49.77%), Query Frame = 0

Query: 60  SAHICFSRDCFVSLHPVCASVTLLDKKHIIVRHMVLHCGSDLSHLLTNSGVVQS------ 119
           S  + F  D F   H V     + D  H  V   VLHCGSDLSHL TNS VVQS      
Sbjct: 82  SRDVVFHEDVF-PFHKVTEKDGISDPFHGFVSPKVLHCGSDLSHLPTNSSVVQSDGCLRT 141

Query: 120 --------------------------------ASDLTSLAVDISDQPVVAASTPPAALFD 179
                                           A DL SLAVDISD  VVAA TP A LFD
Sbjct: 142 FYGHTASPLVCKDPATVPLPTLSPTADTAWPLAPDLISLAVDISDPLVVAAPTPLANLFD 201

Query: 180 ASPPLAHSSSSTPVLPSDPSAAAARSSSTSTPLDLSDPSSAPAPPAVATPDPPSIVAVPD 239
           +SP LAH SS  PVLPSDPSAAA                  P PP V   DPP+I  VPD
Sbjct: 202 SSPALAHPSSMVPVLPSDPSAAA-----------------TPTPPVVTASDPPTITTVPD 261

BLAST of Moc02g17600 vs. ExPASy TrEMBL
Match: A0A2N9IMH2 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS53944 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.7e-05
Identity = 29/63 (46.03%), Postives = 42/63 (66.67%), Query Frame = 0

Query: 269  NLMVANLID-PSGHWNEPLIRELLDEDEVDGILSIVLPRTNQPFKITWSLTKNGMFTVKS 328
            +L+VA LI+  +  WNEP+++EL   D V+ IL I +P   +P K+ W L  NG FTVKS
Sbjct: 1003 SLVVACLINHGTRSWNEPMLKELFTNDSVEAILKIHIPTIPRPDKLAWILNSNGRFTVKS 1062

Query: 329  AYR 331
            A++
Sbjct: 1063 AFK 1065

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022150855.13.0e-2547.00uncharacterized protein LOC111018899 [Momordica charantia][more]
XP_042972999.18.3e-0746.38uncharacterized protein LOC122304801 [Carya illinoinensis][more]
XP_033135982.14.6e-0542.31uncharacterized protein LOC103841762 [Brassica rapa][more]
KAF5462966.11.0e-0445.07hypothetical protein F2P56_018926 [Juglans regia][more]
XP_040986468.11.3e-0443.66uncharacterized protein LOC121234565 [Juglans microcarpa x Juglans regia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1D9M21.5e-2547.00uncharacterized protein LOC111018899 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
A0A2N9IMH21.7e-0546.03Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS53944 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 150..178
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 150..193

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc02g17600.1Moc02g17600.1mRNA