Moc02g17530 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc02g17530
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr2: 13112529 .. 13113689 (-)
RNA-Seq ExpressionMoc02g17530
SyntenyMoc02g17530
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTTCGATGGGGGCAATTTCGAATATTGGAATATGCAAATTAAGGATTACTTGACCTGCAAGAAGTTGAATAAAGCTTTAAAGGAACGACCAGCAGGGATGAAAGATAAAGATTGGGTAGAGACGAATGAACAGGCAGTTACCTTTATCAGATTGTGTTTATCGATGAATGTGGCTAGTCTCGTAGCAAACGAAACGACAGCAATAGATCTGATGAAAGCACTGGAGAATAGGTACGAGAAACCCTCAGCTAATAATAAGGTCTATCTCATTAGAAGGTTCTTTAACATTCAAATGGAAGAGAATACTTCTGTCAATTCCCACATAAATGAGGTCATAAAATTAATCAACCAAGTGGCATCAGTTAAGATTACTTTTAATGACGAAGTGAATGTTATTCAGTTGCTAACATCTTTACTTGAAAGTTGGGAAACGATGAAGACAGCAGTGTCCAATTCGTTAGGAGACAAATCTTTGAAATTTTCAGAAATTTGTGATGCGGCAATTGCTGAAGAAATTCGCAGAAAGGGGAGTGGAAAAGAATCTACTTCTGTACAAGGCTTAGCATTGTCTGTCGAAAAAGGTAAAGAGAAGGTTGCGTCTGATGACAGATAGCAGAAGCATAGTAGGAGGGATTGGAACAGAGATGTTGAATGTTTTCATTGCCACAAAAAATGCCACATCAAGAAAAACTGTAGAATATTAAAAGAGGATCTGAAGAGGTATATGGCAGAGTCAAATGCAGTTGTAGACGATGCCTTCGTCTGTGTTGAAAGCAACACAGAAATAGGAAACCAGCCATCGGAGTGGGTAATAGACAGTGCAGCTTCAGTACACATATCTTCAAGTAGAAGATTATTCACATCTTTCAGAAGAGGCAATCGCGGCCACGTGAGGATGGAGAATGGAAGACTTTCCAAGACTAAAGGGATTGGAAATATACGATTGAAGACCGATAGTGGGACTGAGTTATTACTGCAAGATGTCAGGTATGTACCCAGTATCAGAATGAACCTTATCTCTACAGGTAAGTTGGACGATGATAGTTATCAGAGTGAGTTTGATGGGAACCAGTGGAAGCTCACCAAATCCAAGTTGGTGGCAGTTGGCCATAAAGGATCTACAGTTTACATGTCGCAATTGAGTGTTGCCAGATAA

mRNA sequence

ATGAAGTTCGATGGGGGCAATTTCGAATATTGGAATATGCAAATTAAGGATTACTTGACCTGCAAGAAGTTGAATAAAGCTTTAAAGGAACGACCAGCAGGGATGAAAGATAAAGATTGGGTAGAGACGAATGAACAGGCAGTTACCTTTATCAGATTGTGTTTATCGATGAATGTGGCTAGTCTCGTAGCAAACGAAACGACAGCAATAGATCTGATGAAAGCACTGGAGAATAGGTACGAGAAACCCTCAGCTAATAATAAGGTCTATCTCATTAGAAGGTTCTTTAACATTCAAATGGAAGAGAATACTTCTGTCAATTCCCACATAAATGAGGTCATAAAATTAATCAACCAAGTGGCATCAGTTAAGATTACTTTTAATGACGAAGTGAATGTTATTCAGTTGCTAACATCTTTACTTGAAAGTTGGGAAACGATGAAGACAGCAGTGTCCAATTCGTTAGGAGACAAATCTTTGAAATTTTCAGAAATTTGTGATGCGGCAATTGCTGAAGAAATTCGCAGAAAGGGGAGTGGAAAAGAATCTACTTCTGTACAAGGCTTAGCATTGTCTGTCGAAAAAGAGTCAAATGCAGTTGTAGACGATGCCTTCGTCTGTGTTGAAAGCAACACAGAAATAGGAAACCAGCCATCGGAGTGGGTAATAGACAGTGCAGCTTCAGTACACATATCTTCAAGTAGAAGATTATTCACATCTTTCAGAAGAGGCAATCGCGGCCACGTGAGGATGGAGAATGGAAGACTTTCCAAGACTAAAGGGATTGGAAATATACGATTGAAGACCGATAGTGGGACTGAGTTATTACTGCAAGATGTCAGGTATGTACCCAGTATCAGAATGAACCTTATCTCTACAGGTAAGTTGGACGATGATAGTTATCAGAGTGAGTTTGATGGGAACCAGTGGAAGCTCACCAAATCCAAGTTGGTGGCAGTTGGCCATAAAGGATCTACAGTTTACATGTCGCAATTGAGTGTTGCCAGATAA

Coding sequence (CDS)

ATGAAGTTCGATGGGGGCAATTTCGAATATTGGAATATGCAAATTAAGGATTACTTGACCTGCAAGAAGTTGAATAAAGCTTTAAAGGAACGACCAGCAGGGATGAAAGATAAAGATTGGGTAGAGACGAATGAACAGGCAGTTACCTTTATCAGATTGTGTTTATCGATGAATGTGGCTAGTCTCGTAGCAAACGAAACGACAGCAATAGATCTGATGAAAGCACTGGAGAATAGGTACGAGAAACCCTCAGCTAATAATAAGGTCTATCTCATTAGAAGGTTCTTTAACATTCAAATGGAAGAGAATACTTCTGTCAATTCCCACATAAATGAGGTCATAAAATTAATCAACCAAGTGGCATCAGTTAAGATTACTTTTAATGACGAAGTGAATGTTATTCAGTTGCTAACATCTTTACTTGAAAGTTGGGAAACGATGAAGACAGCAGTGTCCAATTCGTTAGGAGACAAATCTTTGAAATTTTCAGAAATTTGTGATGCGGCAATTGCTGAAGAAATTCGCAGAAAGGGGAGTGGAAAAGAATCTACTTCTGTACAAGGCTTAGCATTGTCTGTCGAAAAAGAGTCAAATGCAGTTGTAGACGATGCCTTCGTCTGTGTTGAAAGCAACACAGAAATAGGAAACCAGCCATCGGAGTGGGTAATAGACAGTGCAGCTTCAGTACACATATCTTCAAGTAGAAGATTATTCACATCTTTCAGAAGAGGCAATCGCGGCCACGTGAGGATGGAGAATGGAAGACTTTCCAAGACTAAAGGGATTGGAAATATACGATTGAAGACCGATAGTGGGACTGAGTTATTACTGCAAGATGTCAGGTATGTACCCAGTATCAGAATGAACCTTATCTCTACAGGTAAGTTGGACGATGATAGTTATCAGAGTGAGTTTGATGGGAACCAGTGGAAGCTCACCAAATCCAAGTTGGTGGCAGTTGGCCATAAAGGATCTACAGTTTACATGTCGCAATTGAGTGTTGCCAGATAA

Protein sequence

MKFDGGNFEYWNMQIKDYLTCKKLNKALKERPAGMKDKDWVETNEQAVTFIRLCLSMNVASLVANETTAIDLMKALENRYEKPSANNKVYLIRRFFNIQMEENTSVNSHINEVIKLINQVASVKITFNDEVNVIQLLTSLLESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVQGLALSVEKESNAVVDDAFVCVESNTEIGNQPSEWVIDSAASVHISSSRRLFTSFRRGNRGHVRMENGRLSKTKGIGNIRLKTDSGTELLLQDVRYVPSIRMNLISTGKLDDDSYQSEFDGNQWKLTKSKLVAVGHKGSTVYMSQLSVAR
Homology
BLAST of Moc02g17530 vs. NCBI nr
Match: RVW60263.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 254.6 bits (649), Expect = 1.2e-63
Identity = 141/331 (42.60%), Postives = 209/331 (63.14%), Query Frame = 0

Query: 2   KFDGGNFEYWNMQIKDYLTCKKLN-KALKERPAGMKDKDWVETNEQAVTFIRLCLSMNVA 61
           KFDG +F YW MQI+DYL  +KL+   L  +P  MK ++W   + Q +  IRL LS +VA
Sbjct: 13  KFDGTDFAYWRMQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSRSVA 72

Query: 62  SLVANETTAIDLMKALENRYEKPSANNKVYLIRRFFNIQMEENTSVNSHINEVIKLINQV 121
             V  E T  DLMKAL   YEKPSANNKV+L+++ FN++M EN SV  H+NE   + NQ+
Sbjct: 73  HNVVKEKTTADLMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQHLNEFNTITNQL 132

Query: 122 ASVKITFNDEVNVIQLLTSLLESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSG 181
           +SV+I F+DE+  + +L SL  SWE M+ AVSNS G + LK+++I D  +AEEIRR+ +G
Sbjct: 133 SSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRRRDAG 192

Query: 182 KESTSVQGLALSVEKESNAVVDDAFVCVESNTEIGNQPSEWVIDSAASVHISSSRRLFTS 241
           +  TS  G AL++E      V DA +       + +   +WV+DS AS H +  R +  +
Sbjct: 193 E--TSGSGSALNLETRGREEVQDALLLA-----VDSPLDDWVLDSGASFHTTPHREIIQN 252

Query: 242 FRRGNRGHVRMENGRLSKTKGIGNIRLKTDSGTELLLQDVRYVPSIRMNLISTGKLDDDS 301
           +  G+ G V + +G      G+G++R+   +G+  LL+ VR++P +R NLIS G+LDD+ 
Sbjct: 253 YVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLEKVRHIPDLRRNLISVGQLDDEG 312

Query: 302 YQSEFDGNQWKLTK-SKLVAVGHKGSTVYMS 331
           +   F G  WK+TK ++++A G K  T+YM+
Sbjct: 313 HAILFVGGTWKVTKGARVLARGKKTGTLYMT 336

BLAST of Moc02g17530 vs. NCBI nr
Match: RVW77419.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 246.1 bits (627), Expect = 4.2e-61
Identity = 135/331 (40.79%), Postives = 203/331 (61.33%), Query Frame = 0

Query: 2   KFDGGNFEYWNMQIKDYLTCKKLN-KALKERPAGMKDKDWVETNEQAVTFIRLCLSMNVA 61
           KFDG +F YW MQI+DYL  +KL+   L  +P  MK ++W   + Q +  IRL LS +VA
Sbjct: 13  KFDGTDFAYWRMQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSRSVA 72

Query: 62  SLVANETTAIDLMKALENRYEKPSANNKVYLIRRFFNIQMEENTSVNSHINEVIKLINQV 121
             V  E T  DLMKAL   YEKPSANNKV+L+++ FN++M EN SV  H+NE   + NQ+
Sbjct: 73  HNVVKEKTTADLMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQHLNEFNTITNQL 132

Query: 122 ASVKITFNDEVNVIQLLTSLLESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSG 181
           +SV+I F+DE+  + +L SL  SWE M+ AVSNS G + LK+++I D  ++EEIRR+  G
Sbjct: 133 SSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILSEEIRRRDEG 192

Query: 182 KESTSVQGLALSVEKESNAVVDDAFVCVESNTEIGNQPSEWVIDSAASVHISSSRRLFTS 241
           + ++       S  + S  V      C      + +   +WV+DS AS H +  R +  +
Sbjct: 193 RSNSRNSNRNRSKSRSSQQV-----QCWNCGKTVDSPLDDWVLDSGASFHTTPHREIIQN 252

Query: 242 FRRGNRGHVRMENGRLSKTKGIGNIRLKTDSGTELLLQDVRYVPSIRMNLISTGKLDDDS 301
           +  G+ G V + +G      G+G++R+   +G+  LL+ VR++P +R NLIS G+LDD+ 
Sbjct: 253 YVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLEKVRHIPDLRRNLISIGQLDDEG 312

Query: 302 YQSEFDGNQWKLTK-SKLVAVGHKGSTVYMS 331
           +   F G  WK+TK ++++A G K  T+YM+
Sbjct: 313 HAILFVGGTWKVTKGARVLACGKKTGTLYMT 338

BLAST of Moc02g17530 vs. NCBI nr
Match: RVW73393.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 244.6 bits (623), Expect = 1.2e-60
Identity = 143/351 (40.74%), Postives = 213/351 (60.68%), Query Frame = 0

Query: 2   KFDGGNFEYWNMQIKDYLTCKKLN-KALKERPAGMKDKDWVETNEQAVTFIRLCLSMNVA 61
           KFDG +F YW MQI+DYL  +KL+   L  +P  MK ++W   + Q +  IRL LS +VA
Sbjct: 13  KFDGTDFAYWRMQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSRSVA 72

Query: 62  SLVANETTAIDLMKALENRYEKPSANNKVYLIRRFFNIQMEENTSVNSHINEVIKLINQV 121
             V  E T  DLMKAL   YEKPSANNKV+L+++ FN++M EN SV  H+NE   + NQ+
Sbjct: 73  HNVVKEKTTADLMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQHLNEFNTITNQL 132

Query: 122 ASVKITFNDEVNVIQLLTSLLESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSG 181
           +SV+I F+DE+  + +L SL  SWE M+ AVSNS G + LK+++I D  +AEEIRR+ +G
Sbjct: 133 SSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRRRDAG 192

Query: 182 KESTSVQGLALSVE--------------KESNAVVDDAFVCVESNTE------IGNQPSE 241
           +  TS  G AL++E              K+ N   DD+   V    +      + +   +
Sbjct: 193 E--TSGSGSALNLETRGRGHFKRQCKSPKKKNE--DDSANAVTEEVQDALLLAVDSPLDD 252

Query: 242 WVIDSAASVHISSSRRLFTSFRRGNRGHVRMENGRLSKTKGIGNIRLKTDSGTELLLQDV 301
           WV+DS AS H +  R +  ++  G+ G V + +G      G+G++R+   +G+  LL+ V
Sbjct: 253 WVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLEKV 312

Query: 302 RYVPSIRMNLISTGKLDDDSYQSEFDGNQWKLTK-SKLVAVGHKGSTVYMS 331
           R++P +R NLIS G+LDD+ +   F G  WK+TK ++++A G K  T+YM+
Sbjct: 313 RHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVLARGKKTGTLYMT 359

BLAST of Moc02g17530 vs. NCBI nr
Match: RVW17810.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 244.6 bits (623), Expect = 1.2e-60
Identity = 143/351 (40.74%), Postives = 213/351 (60.68%), Query Frame = 0

Query: 2   KFDGGNFEYWNMQIKDYLTCKKLN-KALKERPAGMKDKDWVETNEQAVTFIRLCLSMNVA 61
           KFDG +F YW MQI+DYL  +KL+   L  +P  MK ++W   + Q +  IRL LS +VA
Sbjct: 13  KFDGTDFAYWRMQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSRSVA 72

Query: 62  SLVANETTAIDLMKALENRYEKPSANNKVYLIRRFFNIQMEENTSVNSHINEVIKLINQV 121
             V  E T  DLMKAL   YEKPSANNKV+L+++ FN++M EN SV  H+NE   + NQ+
Sbjct: 73  HNVVKEKTTADLMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQHLNEFNTITNQL 132

Query: 122 ASVKITFNDEVNVIQLLTSLLESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSG 181
           +SV+I F+DE+  + +L SL  SWE M+ AVSNS G + LK+++I D  +AEEIRR+ +G
Sbjct: 133 SSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRRRDAG 192

Query: 182 KESTSVQGLALSVE--------------KESNAVVDDAFVCVESNTE------IGNQPSE 241
           +  TS  G AL++E              K+ N   DD+   V    +      + +   +
Sbjct: 193 E--TSGSGSALNLETRGRGHFKRQCKSPKKKNE--DDSANAVTEEVQDALLLAVDSPLDD 252

Query: 242 WVIDSAASVHISSSRRLFTSFRRGNRGHVRMENGRLSKTKGIGNIRLKTDSGTELLLQDV 301
           WV+DS AS H +  R +  ++  G+ G V + +G      G+G++R+   +G+  LL+ V
Sbjct: 253 WVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLEKV 312

Query: 302 RYVPSIRMNLISTGKLDDDSYQSEFDGNQWKLTK-SKLVAVGHKGSTVYMS 331
           R++P +R NLIS G+LDD+ +   F G  WK+TK ++++A G K  T+YM+
Sbjct: 313 RHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVLARGKKTGTLYMT 359

BLAST of Moc02g17530 vs. NCBI nr
Match: RVW62119.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 243.8 bits (621), Expect = 2.1e-60
Identity = 143/351 (40.74%), Postives = 212/351 (60.40%), Query Frame = 0

Query: 2   KFDGGNFEYWNMQIKDYLTCKKLN-KALKERPAGMKDKDWVETNEQAVTFIRLCLSMNVA 61
           KFDG +F YW MQI+DYL  +KL+   L  +P  MK ++W   + Q +  IRL LS +VA
Sbjct: 13  KFDGTDFAYWRMQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSRSVA 72

Query: 62  SLVANETTAIDLMKALENRYEKPSANNKVYLIRRFFNIQMEENTSVNSHINEVIKLINQV 121
             V  E T  DLMKAL   YEKPSANNKV+L+++ FN++M EN SV  H+NE   + NQ+
Sbjct: 73  HNVVKEKTTADLMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQHLNEFNTITNQL 132

Query: 122 ASVKITFNDEVNVIQLLTSLLESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSG 181
           +SV+I F+DE+  + +L SL  SWE M+ AVSNS G + LK+++I D  +AEEIRR+ +G
Sbjct: 133 SSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRRRDAG 192

Query: 182 KESTSVQGLALSVE--------------KESNAVVDDAFVCVESNTE------IGNQPSE 241
           +  TS  G AL++E              K+ N   DD+   V           + +   +
Sbjct: 193 E--TSGSGSALNLETRGRGHFKRQCKSPKKKNE--DDSANAVTEEVHDALLLAVDSPLDD 252

Query: 242 WVIDSAASVHISSSRRLFTSFRRGNRGHVRMENGRLSKTKGIGNIRLKTDSGTELLLQDV 301
           WV+DS AS H +  R +  ++  G+ G V + +G      G+G++R+   +G+  LL+ V
Sbjct: 253 WVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLEKV 312

Query: 302 RYVPSIRMNLISTGKLDDDSYQSEFDGNQWKLTK-SKLVAVGHKGSTVYMS 331
           R++P +R NLIS G+LDD+ +   F G  WK+TK ++++A G K  T+YM+
Sbjct: 313 RHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVLARGKKTGTLYMT 359

BLAST of Moc02g17530 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 3.4e-37
Identity = 120/403 (29.78%), Postives = 195/403 (48.39%), Query Frame = 0

Query: 2   KFDGGN-FEYWNMQIKDYLTCKKLNKAL---KERPAGMKDKDWVETNEQAVTFIRLCLSM 61
           KF+G N F  W  +++D L  + L+K L    ++P  MK +DW + +E+A + IRL LS 
Sbjct: 10  KFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAASAIRLHLSD 69

Query: 62  NVASLVANETTAIDLMKALENRYEKPSANNKVYLIRRFFNIQMEENTSVNSHINEVIKLI 121
           +V + + +E TA  +   LE+ Y   +  NK+YL ++ + + M E T+  SH+N    LI
Sbjct: 70  DVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHLNVFNGLI 129

Query: 122 NQVASVKITFNDEVNVIQLLTSLLESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRK 181
            Q+A++ +   +E   I LL SL  S++ + T + +  G  +++  ++  A +  E  RK
Sbjct: 130 TQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILH--GKTTIELKDVTSALLLNEKMRK 189

Query: 182 GSGKESTSV--QGLALSVEKESN----------------AVVDDAFVC------------ 241
               +  ++  +G   S ++ SN                + V + + C            
Sbjct: 190 KPENQGQALITEGRGRSYQRSSNNYGRSGARGKSKNRSKSRVRNCYNCNQPGHFKRDCPN 249

Query: 242 --------------------VESNTEI-------------GNQPSEWVIDSAASVHISSS 301
                               V++N  +                 SEWV+D+AAS H +  
Sbjct: 250 PRKGKGETSGQKNDDNTAAMVQNNDNVVLFINEEEECMHLSGPESEWVVDTAASHHATPV 309

Query: 302 RRLFTSFRRGNRGHVRMENGRLSKTKGIGNIRLKTDSGTELLLQDVRYVPSIRMNLISTG 337
           R LF  +  G+ G V+M N   SK  GIG+I +KT+ G  L+L+DVR+VP +RMNLIS  
Sbjct: 310 RDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHVPDLRMNLISGI 369

BLAST of Moc02g17530 vs. ExPASy TrEMBL
Match: A0A438FJS0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_4031 PE=4 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 5.8e-64
Identity = 141/331 (42.60%), Postives = 209/331 (63.14%), Query Frame = 0

Query: 2   KFDGGNFEYWNMQIKDYLTCKKLN-KALKERPAGMKDKDWVETNEQAVTFIRLCLSMNVA 61
           KFDG +F YW MQI+DYL  +KL+   L  +P  MK ++W   + Q +  IRL LS +VA
Sbjct: 13  KFDGTDFAYWRMQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSRSVA 72

Query: 62  SLVANETTAIDLMKALENRYEKPSANNKVYLIRRFFNIQMEENTSVNSHINEVIKLINQV 121
             V  E T  DLMKAL   YEKPSANNKV+L+++ FN++M EN SV  H+NE   + NQ+
Sbjct: 73  HNVVKEKTTADLMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQHLNEFNTITNQL 132

Query: 122 ASVKITFNDEVNVIQLLTSLLESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSG 181
           +SV+I F+DE+  + +L SL  SWE M+ AVSNS G + LK+++I D  +AEEIRR+ +G
Sbjct: 133 SSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRRRDAG 192

Query: 182 KESTSVQGLALSVEKESNAVVDDAFVCVESNTEIGNQPSEWVIDSAASVHISSSRRLFTS 241
           +  TS  G AL++E      V DA +       + +   +WV+DS AS H +  R +  +
Sbjct: 193 E--TSGSGSALNLETRGREEVQDALLLA-----VDSPLDDWVLDSGASFHTTPHREIIQN 252

Query: 242 FRRGNRGHVRMENGRLSKTKGIGNIRLKTDSGTELLLQDVRYVPSIRMNLISTGKLDDDS 301
           +  G+ G V + +G      G+G++R+   +G+  LL+ VR++P +R NLIS G+LDD+ 
Sbjct: 253 YVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLEKVRHIPDLRRNLISVGQLDDEG 312

Query: 302 YQSEFDGNQWKLTK-SKLVAVGHKGSTVYMS 331
           +   F G  WK+TK ++++A G K  T+YM+
Sbjct: 313 HAILFVGGTWKVTKGARVLARGKKTGTLYMT 336

BLAST of Moc02g17530 vs. ExPASy TrEMBL
Match: A0A438GYZ2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_346 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 2.0e-61
Identity = 135/331 (40.79%), Postives = 203/331 (61.33%), Query Frame = 0

Query: 2   KFDGGNFEYWNMQIKDYLTCKKLN-KALKERPAGMKDKDWVETNEQAVTFIRLCLSMNVA 61
           KFDG +F YW MQI+DYL  +KL+   L  +P  MK ++W   + Q +  IRL LS +VA
Sbjct: 13  KFDGTDFAYWRMQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSRSVA 72

Query: 62  SLVANETTAIDLMKALENRYEKPSANNKVYLIRRFFNIQMEENTSVNSHINEVIKLINQV 121
             V  E T  DLMKAL   YEKPSANNKV+L+++ FN++M EN SV  H+NE   + NQ+
Sbjct: 73  HNVVKEKTTADLMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQHLNEFNTITNQL 132

Query: 122 ASVKITFNDEVNVIQLLTSLLESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSG 181
           +SV+I F+DE+  + +L SL  SWE M+ AVSNS G + LK+++I D  ++EEIRR+  G
Sbjct: 133 SSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILSEEIRRRDEG 192

Query: 182 KESTSVQGLALSVEKESNAVVDDAFVCVESNTEIGNQPSEWVIDSAASVHISSSRRLFTS 241
           + ++       S  + S  V      C      + +   +WV+DS AS H +  R +  +
Sbjct: 193 RSNSRNSNRNRSKSRSSQQV-----QCWNCGKTVDSPLDDWVLDSGASFHTTPHREIIQN 252

Query: 242 FRRGNRGHVRMENGRLSKTKGIGNIRLKTDSGTELLLQDVRYVPSIRMNLISTGKLDDDS 301
           +  G+ G V + +G      G+G++R+   +G+  LL+ VR++P +R NLIS G+LDD+ 
Sbjct: 253 YVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLEKVRHIPDLRRNLISIGQLDDEG 312

Query: 302 YQSEFDGNQWKLTK-SKLVAVGHKGSTVYMS 331
           +   F G  WK+TK ++++A G K  T+YM+
Sbjct: 313 HAILFVGGTWKVTKGARVLACGKKTGTLYMT 338

BLAST of Moc02g17530 vs. ExPASy TrEMBL
Match: A0A2N9GZ72 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS35439 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 2.0e-61
Identity = 143/351 (40.74%), Postives = 212/351 (60.40%), Query Frame = 0

Query: 2   KFDGGNFEYWNMQIKDYLTCKKLN-KALKERPAGMKDKDWVETNEQAVTFIRLCLSMNVA 61
           KFDG +F YW MQI+DYL  KKL+   L ++P  M+D +W   + Q +  IRL LS ++A
Sbjct: 13  KFDGTDFGYWKMQIEDYLYGKKLHLPLLGKKPNKMEDAEWALLDRQVLGVIRLTLSRSIA 72

Query: 62  SLVANETTAIDLMKALENRYEKPSANNKVYLIRRFFNIQMEENTSVNSHINEVIKLINQV 121
             V  ETT + LM AL   YEKPSANNKV+L+++ FN++M E  +V  H+NE   + NQ+
Sbjct: 73  HNVVKETTTVGLMTALSGMYEKPSANNKVHLMKKLFNLKMAEGAAVAKHLNEFNTITNQL 132

Query: 122 ASVKITFNDEVNVIQLLTSLLESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSG 181
           +SV+I F+DE+  + +L SL  SWE M+ AVSNS G   LK+ +I D  ++EE+RR+ + 
Sbjct: 133 SSVEIEFDDEIRALIVLASLPNSWEAMRMAVSNSAGKGKLKYDDIRDLILSEEVRRRDAC 192

Query: 182 KESTSVQGLAL---------SVEKESNAVVDDAFVCVESNTE-----IGNQPSEWVIDSA 241
            ++   Q               EK + AVVDD  V V S  E     + N   EWV+DSA
Sbjct: 193 IDNAEGQAFVTENRDKDHKHDDEKGTTAVVDDEEVVVLSVQEQKCEHVDNIDDEWVVDSA 252

Query: 242 ASVHISSSRRLFTSFRRGNRGHVRMENGRLSKTKGIGNIRLKTDSGTELLLQDVRYVPSI 301
           A+ H+  ++ LFT+++ G+ G V+M N   SK  GIG++ +KT+ G  ++L++VR+VP +
Sbjct: 253 ATHHVVRTKELFTTYKAGDFGTVKMGNTSYSKIVGIGDVCIKTNVGFTVMLKNVRHVPDL 312

Query: 302 RMNLISTGKLDDDSYQSEFDGNQWKLTKSKL-VAVGHKGSTVYMSQLSVAR 337
             NLIST  +D   Y +     +WKL K  + VA G  G  +YM+++   +
Sbjct: 313 CFNLISTPVMDRAGYCNHLGNGRWKLAKGPMVVARGRIGCGLYMTRVKACK 363

BLAST of Moc02g17530 vs. ExPASy TrEMBL
Match: A0A438GME7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_3541 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 6.0e-61
Identity = 143/351 (40.74%), Postives = 213/351 (60.68%), Query Frame = 0

Query: 2   KFDGGNFEYWNMQIKDYLTCKKLN-KALKERPAGMKDKDWVETNEQAVTFIRLCLSMNVA 61
           KFDG +F YW MQI+DYL  +KL+   L  +P  MK ++W   + Q +  IRL LS +VA
Sbjct: 13  KFDGTDFAYWRMQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSRSVA 72

Query: 62  SLVANETTAIDLMKALENRYEKPSANNKVYLIRRFFNIQMEENTSVNSHINEVIKLINQV 121
             V  E T  DLMKAL   YEKPSANNKV+L+++ FN++M EN SV  H+NE   + NQ+
Sbjct: 73  HNVVKEKTTADLMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQHLNEFNTITNQL 132

Query: 122 ASVKITFNDEVNVIQLLTSLLESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSG 181
           +SV+I F+DE+  + +L SL  SWE M+ AVSNS G + LK+++I D  +AEEIRR+ +G
Sbjct: 133 SSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRRRDAG 192

Query: 182 KESTSVQGLALSVE--------------KESNAVVDDAFVCVESNTE------IGNQPSE 241
           +  TS  G AL++E              K+ N   DD+   V    +      + +   +
Sbjct: 193 E--TSGSGSALNLETRGRGHFKRQCKSPKKKNE--DDSANAVTEEVQDALLLAVDSPLDD 252

Query: 242 WVIDSAASVHISSSRRLFTSFRRGNRGHVRMENGRLSKTKGIGNIRLKTDSGTELLLQDV 301
           WV+DS AS H +  R +  ++  G+ G V + +G      G+G++R+   +G+  LL+ V
Sbjct: 253 WVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLEKV 312

Query: 302 RYVPSIRMNLISTGKLDDDSYQSEFDGNQWKLTK-SKLVAVGHKGSTVYMS 331
           R++P +R NLIS G+LDD+ +   F G  WK+TK ++++A G K  T+YM+
Sbjct: 313 RHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVLARGKKTGTLYMT 359

BLAST of Moc02g17530 vs. ExPASy TrEMBL
Match: A0A438C3I2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_2500 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 6.0e-61
Identity = 143/351 (40.74%), Postives = 213/351 (60.68%), Query Frame = 0

Query: 2   KFDGGNFEYWNMQIKDYLTCKKLN-KALKERPAGMKDKDWVETNEQAVTFIRLCLSMNVA 61
           KFDG +F YW MQI+DYL  +KL+   L  +P  MK ++W   + Q +  IRL LS +VA
Sbjct: 13  KFDGTDFAYWRMQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSRSVA 72

Query: 62  SLVANETTAIDLMKALENRYEKPSANNKVYLIRRFFNIQMEENTSVNSHINEVIKLINQV 121
             V  E T  DLMKAL   YEKPSANNKV+L+++ FN++M EN SV  H+NE   + NQ+
Sbjct: 73  HNVVKEKTTADLMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQHLNEFNTITNQL 132

Query: 122 ASVKITFNDEVNVIQLLTSLLESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSG 181
           +SV+I F+DE+  + +L SL  SWE M+ AVSNS G + LK+++I D  +AEEIRR+ +G
Sbjct: 133 SSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRRRDAG 192

Query: 182 KESTSVQGLALSVE--------------KESNAVVDDAFVCVESNTE------IGNQPSE 241
           +  TS  G AL++E              K+ N   DD+   V    +      + +   +
Sbjct: 193 E--TSGSGSALNLETRGRGHFKRQCKSPKKKNE--DDSANAVTEEVQDALLLAVDSPLDD 252

Query: 242 WVIDSAASVHISSSRRLFTSFRRGNRGHVRMENGRLSKTKGIGNIRLKTDSGTELLLQDV 301
           WV+DS AS H +  R +  ++  G+ G V + +G      G+G++R+   +G+  LL+ V
Sbjct: 253 WVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLEKV 312

Query: 302 RYVPSIRMNLISTGKLDDDSYQSEFDGNQWKLTK-SKLVAVGHKGSTVYMS 331
           R++P +R NLIS G+LDD+ +   F G  WK+TK ++++A G K  T+YM+
Sbjct: 313 RHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVLARGKKTGTLYMT 359

BLAST of Moc02g17530 vs. TAIR 10
Match: AT3G29785.1 (unknown protein; Has 90 Blast hits to 90 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 67.0 bits (162), Expect = 3.3e-11
Identity = 36/88 (40.91%), Postives = 51/88 (57.95%), Query Frame = 0

Query: 2  KFDGGNFEYWNMQIKDYLTCKKLNKALKERPAGMKDKDWVETNEQAVTFIRLCLSMNVAS 61
          K DG ++ +  M+I+DYL  KKL++ L ++   M   DW     Q +  IRL +S N+A 
Sbjct: 8  KVDGTSYSFCRMKIEDYLYGKKLHQPLGKKVETMSQDDWNILYRQVLDVIRLTISKNIAH 67

Query: 62 LVANETTAIDLMKALENRYEKPSANNKV 90
           VA E +   LMK L + Y+KPS NN V
Sbjct: 68 NVAKEKSPDGLMKVLSDIYKKPSTNNTV 95

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RVW60263.11.2e-6342.60Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera][more]
RVW77419.14.2e-6140.79Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera][more]
RVW73393.11.2e-6040.74Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera][more]
RVW17810.11.2e-6040.74Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera][more]
RVW62119.12.1e-6040.74Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera][more]
Match NameE-valueIdentityDescription
P109783.4e-3729.78Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
Match NameE-valueIdentityDescription
A0A438FJS05.8e-6442.60Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
A0A438GYZ22.0e-6140.79Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
A0A2N9GZ722.0e-6140.74Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS35439 PE=4 SV=1[more]
A0A438GME76.0e-6140.74Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
A0A438C3I26.0e-6140.74Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
Match NameE-valueIdentityDescription
AT3G29785.13.3e-1140.91unknown protein; Has 90 Blast hits to 90 proteins in 7 species: Archae - 0; Bact... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 40..178
e-value: 4.0E-27
score: 94.7
NoneNo IPR availablePANTHERPTHR34676:SF1ZINC FINGER, CCHC-TYPE, TUBBY C-TERMINAL-LIKE DOMAIN PROTEIN-RELATEDcoord: 2..185
NoneNo IPR availablePANTHERPTHR34676FAMILY NOT NAMEDcoord: 2..185

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc02g17530.1Moc02g17530.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:1901363 heterocyclic compound binding
molecular_function GO:0097159 organic cyclic compound binding