Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTTCGATGGGGGCAATTTCGAATATTGGAATATGCAAATTAAGGATTACTTGACCTGCAAGAAGTTGAATAAAGCTTTAAAGGAACGACCAGCAGGGATGAAAGATAAAGATTGGGTAGAGACGAATGAACAGGCAGTTACCTTTATCAGATTGTGTTTATCGATGAATGTGGCTAGTCTCGTAGCAAACGAAACGACAGCAATAGATCTGATGAAAGCACTGGAGAATAGGTACGAGAAACCCTCAGCTAATAATAAGGTCTATCTCATTAGAAGGTTCTTTAACATTCAAATGGAAGAGAATACTTCTGTCAATTCCCACATAAATGAGGTCATAAAATTAATCAACCAAGTGGCATCAGTTAAGATTACTTTTAATGACGAAGTGAATGTTATTCAGTTGCTAACATCTTTACTTGAAAGTTGGGAAACGATGAAGACAGCAGTGTCCAATTCGTTAGGAGACAAATCTTTGAAATTTTCAGAAATTTGTGATGCGGCAATTGCTGAAGAAATTCGCAGAAAGGGGAGTGGAAAAGAATCTACTTCTGTACAAGGCTTAGCATTGTCTGTCGAAAAAGGTAAAGAGAAGGTTGCGTCTGATGACAGATAGCAGAAGCATAGTAGGAGGGATTGGAACAGAGATGTTGAATGTTTTCATTGCCACAAAAAATGCCACATCAAGAAAAACTGTAGAATATTAAAAGAGGATCTGAAGAGGTATATGGCAGAGTCAAATGCAGTTGTAGACGATGCCTTCGTCTGTGTTGAAAGCAACACAGAAATAGGAAACCAGCCATCGGAGTGGGTAATAGACAGTGCAGCTTCAGTACACATATCTTCAAGTAGAAGATTATTCACATCTTTCAGAAGAGGCAATCGCGGCCACGTGAGGATGGAGAATGGAAGACTTTCCAAGACTAAAGGGATTGGAAATATACGATTGAAGACCGATAGTGGGACTGAGTTATTACTGCAAGATGTCAGGTATGTACCCAGTATCAGAATGAACCTTATCTCTACAGGTAAGTTGGACGATGATAGTTATCAGAGTGAGTTTGATGGGAACCAGTGGAAGCTCACCAAATCCAAGTTGGTGGCAGTTGGCCATAAAGGATCTACAGTTTACATGTCGCAATTGAGTGTTGCCAGATAA
mRNA sequence
ATGAAGTTCGATGGGGGCAATTTCGAATATTGGAATATGCAAATTAAGGATTACTTGACCTGCAAGAAGTTGAATAAAGCTTTAAAGGAACGACCAGCAGGGATGAAAGATAAAGATTGGGTAGAGACGAATGAACAGGCAGTTACCTTTATCAGATTGTGTTTATCGATGAATGTGGCTAGTCTCGTAGCAAACGAAACGACAGCAATAGATCTGATGAAAGCACTGGAGAATAGGTACGAGAAACCCTCAGCTAATAATAAGGTCTATCTCATTAGAAGGTTCTTTAACATTCAAATGGAAGAGAATACTTCTGTCAATTCCCACATAAATGAGGTCATAAAATTAATCAACCAAGTGGCATCAGTTAAGATTACTTTTAATGACGAAGTGAATGTTATTCAGTTGCTAACATCTTTACTTGAAAGTTGGGAAACGATGAAGACAGCAGTGTCCAATTCGTTAGGAGACAAATCTTTGAAATTTTCAGAAATTTGTGATGCGGCAATTGCTGAAGAAATTCGCAGAAAGGGGAGTGGAAAAGAATCTACTTCTGTACAAGGCTTAGCATTGTCTGTCGAAAAAGAGTCAAATGCAGTTGTAGACGATGCCTTCGTCTGTGTTGAAAGCAACACAGAAATAGGAAACCAGCCATCGGAGTGGGTAATAGACAGTGCAGCTTCAGTACACATATCTTCAAGTAGAAGATTATTCACATCTTTCAGAAGAGGCAATCGCGGCCACGTGAGGATGGAGAATGGAAGACTTTCCAAGACTAAAGGGATTGGAAATATACGATTGAAGACCGATAGTGGGACTGAGTTATTACTGCAAGATGTCAGGTATGTACCCAGTATCAGAATGAACCTTATCTCTACAGGTAAGTTGGACGATGATAGTTATCAGAGTGAGTTTGATGGGAACCAGTGGAAGCTCACCAAATCCAAGTTGGTGGCAGTTGGCCATAAAGGATCTACAGTTTACATGTCGCAATTGAGTGTTGCCAGATAA
Coding sequence (CDS)
ATGAAGTTCGATGGGGGCAATTTCGAATATTGGAATATGCAAATTAAGGATTACTTGACCTGCAAGAAGTTGAATAAAGCTTTAAAGGAACGACCAGCAGGGATGAAAGATAAAGATTGGGTAGAGACGAATGAACAGGCAGTTACCTTTATCAGATTGTGTTTATCGATGAATGTGGCTAGTCTCGTAGCAAACGAAACGACAGCAATAGATCTGATGAAAGCACTGGAGAATAGGTACGAGAAACCCTCAGCTAATAATAAGGTCTATCTCATTAGAAGGTTCTTTAACATTCAAATGGAAGAGAATACTTCTGTCAATTCCCACATAAATGAGGTCATAAAATTAATCAACCAAGTGGCATCAGTTAAGATTACTTTTAATGACGAAGTGAATGTTATTCAGTTGCTAACATCTTTACTTGAAAGTTGGGAAACGATGAAGACAGCAGTGTCCAATTCGTTAGGAGACAAATCTTTGAAATTTTCAGAAATTTGTGATGCGGCAATTGCTGAAGAAATTCGCAGAAAGGGGAGTGGAAAAGAATCTACTTCTGTACAAGGCTTAGCATTGTCTGTCGAAAAAGAGTCAAATGCAGTTGTAGACGATGCCTTCGTCTGTGTTGAAAGCAACACAGAAATAGGAAACCAGCCATCGGAGTGGGTAATAGACAGTGCAGCTTCAGTACACATATCTTCAAGTAGAAGATTATTCACATCTTTCAGAAGAGGCAATCGCGGCCACGTGAGGATGGAGAATGGAAGACTTTCCAAGACTAAAGGGATTGGAAATATACGATTGAAGACCGATAGTGGGACTGAGTTATTACTGCAAGATGTCAGGTATGTACCCAGTATCAGAATGAACCTTATCTCTACAGGTAAGTTGGACGATGATAGTTATCAGAGTGAGTTTGATGGGAACCAGTGGAAGCTCACCAAATCCAAGTTGGTGGCAGTTGGCCATAAAGGATCTACAGTTTACATGTCGCAATTGAGTGTTGCCAGATAA
Protein sequence
MKFDGGNFEYWNMQIKDYLTCKKLNKALKERPAGMKDKDWVETNEQAVTFIRLCLSMNVASLVANETTAIDLMKALENRYEKPSANNKVYLIRRFFNIQMEENTSVNSHINEVIKLINQVASVKITFNDEVNVIQLLTSLLESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVQGLALSVEKESNAVVDDAFVCVESNTEIGNQPSEWVIDSAASVHISSSRRLFTSFRRGNRGHVRMENGRLSKTKGIGNIRLKTDSGTELLLQDVRYVPSIRMNLISTGKLDDDSYQSEFDGNQWKLTKSKLVAVGHKGSTVYMSQLSVAR
Homology
BLAST of Moc02g17530 vs. NCBI nr
Match:
RVW60263.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])
HSP 1 Score: 254.6 bits (649), Expect = 1.2e-63
Identity = 141/331 (42.60%), Postives = 209/331 (63.14%), Query Frame = 0
Query: 2 KFDGGNFEYWNMQIKDYLTCKKLN-KALKERPAGMKDKDWVETNEQAVTFIRLCLSMNVA 61
KFDG +F YW MQI+DYL +KL+ L +P MK ++W + Q + IRL LS +VA
Sbjct: 13 KFDGTDFAYWRMQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSRSVA 72
Query: 62 SLVANETTAIDLMKALENRYEKPSANNKVYLIRRFFNIQMEENTSVNSHINEVIKLINQV 121
V E T DLMKAL YEKPSANNKV+L+++ FN++M EN SV H+NE + NQ+
Sbjct: 73 HNVVKEKTTADLMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQHLNEFNTITNQL 132
Query: 122 ASVKITFNDEVNVIQLLTSLLESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSG 181
+SV+I F+DE+ + +L SL SWE M+ AVSNS G + LK+++I D +AEEIRR+ +G
Sbjct: 133 SSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRRRDAG 192
Query: 182 KESTSVQGLALSVEKESNAVVDDAFVCVESNTEIGNQPSEWVIDSAASVHISSSRRLFTS 241
+ TS G AL++E V DA + + + +WV+DS AS H + R + +
Sbjct: 193 E--TSGSGSALNLETRGREEVQDALLLA-----VDSPLDDWVLDSGASFHTTPHREIIQN 252
Query: 242 FRRGNRGHVRMENGRLSKTKGIGNIRLKTDSGTELLLQDVRYVPSIRMNLISTGKLDDDS 301
+ G+ G V + +G G+G++R+ +G+ LL+ VR++P +R NLIS G+LDD+
Sbjct: 253 YVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLEKVRHIPDLRRNLISVGQLDDEG 312
Query: 302 YQSEFDGNQWKLTK-SKLVAVGHKGSTVYMS 331
+ F G WK+TK ++++A G K T+YM+
Sbjct: 313 HAILFVGGTWKVTKGARVLARGKKTGTLYMT 336
BLAST of Moc02g17530 vs. NCBI nr
Match:
RVW77419.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])
HSP 1 Score: 246.1 bits (627), Expect = 4.2e-61
Identity = 135/331 (40.79%), Postives = 203/331 (61.33%), Query Frame = 0
Query: 2 KFDGGNFEYWNMQIKDYLTCKKLN-KALKERPAGMKDKDWVETNEQAVTFIRLCLSMNVA 61
KFDG +F YW MQI+DYL +KL+ L +P MK ++W + Q + IRL LS +VA
Sbjct: 13 KFDGTDFAYWRMQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSRSVA 72
Query: 62 SLVANETTAIDLMKALENRYEKPSANNKVYLIRRFFNIQMEENTSVNSHINEVIKLINQV 121
V E T DLMKAL YEKPSANNKV+L+++ FN++M EN SV H+NE + NQ+
Sbjct: 73 HNVVKEKTTADLMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQHLNEFNTITNQL 132
Query: 122 ASVKITFNDEVNVIQLLTSLLESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSG 181
+SV+I F+DE+ + +L SL SWE M+ AVSNS G + LK+++I D ++EEIRR+ G
Sbjct: 133 SSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILSEEIRRRDEG 192
Query: 182 KESTSVQGLALSVEKESNAVVDDAFVCVESNTEIGNQPSEWVIDSAASVHISSSRRLFTS 241
+ ++ S + S V C + + +WV+DS AS H + R + +
Sbjct: 193 RSNSRNSNRNRSKSRSSQQV-----QCWNCGKTVDSPLDDWVLDSGASFHTTPHREIIQN 252
Query: 242 FRRGNRGHVRMENGRLSKTKGIGNIRLKTDSGTELLLQDVRYVPSIRMNLISTGKLDDDS 301
+ G+ G V + +G G+G++R+ +G+ LL+ VR++P +R NLIS G+LDD+
Sbjct: 253 YVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLEKVRHIPDLRRNLISIGQLDDEG 312
Query: 302 YQSEFDGNQWKLTK-SKLVAVGHKGSTVYMS 331
+ F G WK+TK ++++A G K T+YM+
Sbjct: 313 HAILFVGGTWKVTKGARVLACGKKTGTLYMT 338
BLAST of Moc02g17530 vs. NCBI nr
Match:
RVW73393.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])
HSP 1 Score: 244.6 bits (623), Expect = 1.2e-60
Identity = 143/351 (40.74%), Postives = 213/351 (60.68%), Query Frame = 0
Query: 2 KFDGGNFEYWNMQIKDYLTCKKLN-KALKERPAGMKDKDWVETNEQAVTFIRLCLSMNVA 61
KFDG +F YW MQI+DYL +KL+ L +P MK ++W + Q + IRL LS +VA
Sbjct: 13 KFDGTDFAYWRMQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSRSVA 72
Query: 62 SLVANETTAIDLMKALENRYEKPSANNKVYLIRRFFNIQMEENTSVNSHINEVIKLINQV 121
V E T DLMKAL YEKPSANNKV+L+++ FN++M EN SV H+NE + NQ+
Sbjct: 73 HNVVKEKTTADLMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQHLNEFNTITNQL 132
Query: 122 ASVKITFNDEVNVIQLLTSLLESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSG 181
+SV+I F+DE+ + +L SL SWE M+ AVSNS G + LK+++I D +AEEIRR+ +G
Sbjct: 133 SSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRRRDAG 192
Query: 182 KESTSVQGLALSVE--------------KESNAVVDDAFVCVESNTE------IGNQPSE 241
+ TS G AL++E K+ N DD+ V + + + +
Sbjct: 193 E--TSGSGSALNLETRGRGHFKRQCKSPKKKNE--DDSANAVTEEVQDALLLAVDSPLDD 252
Query: 242 WVIDSAASVHISSSRRLFTSFRRGNRGHVRMENGRLSKTKGIGNIRLKTDSGTELLLQDV 301
WV+DS AS H + R + ++ G+ G V + +G G+G++R+ +G+ LL+ V
Sbjct: 253 WVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLEKV 312
Query: 302 RYVPSIRMNLISTGKLDDDSYQSEFDGNQWKLTK-SKLVAVGHKGSTVYMS 331
R++P +R NLIS G+LDD+ + F G WK+TK ++++A G K T+YM+
Sbjct: 313 RHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVLARGKKTGTLYMT 359
BLAST of Moc02g17530 vs. NCBI nr
Match:
RVW17810.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])
HSP 1 Score: 244.6 bits (623), Expect = 1.2e-60
Identity = 143/351 (40.74%), Postives = 213/351 (60.68%), Query Frame = 0
Query: 2 KFDGGNFEYWNMQIKDYLTCKKLN-KALKERPAGMKDKDWVETNEQAVTFIRLCLSMNVA 61
KFDG +F YW MQI+DYL +KL+ L +P MK ++W + Q + IRL LS +VA
Sbjct: 13 KFDGTDFAYWRMQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSRSVA 72
Query: 62 SLVANETTAIDLMKALENRYEKPSANNKVYLIRRFFNIQMEENTSVNSHINEVIKLINQV 121
V E T DLMKAL YEKPSANNKV+L+++ FN++M EN SV H+NE + NQ+
Sbjct: 73 HNVVKEKTTADLMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQHLNEFNTITNQL 132
Query: 122 ASVKITFNDEVNVIQLLTSLLESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSG 181
+SV+I F+DE+ + +L SL SWE M+ AVSNS G + LK+++I D +AEEIRR+ +G
Sbjct: 133 SSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRRRDAG 192
Query: 182 KESTSVQGLALSVE--------------KESNAVVDDAFVCVESNTE------IGNQPSE 241
+ TS G AL++E K+ N DD+ V + + + +
Sbjct: 193 E--TSGSGSALNLETRGRGHFKRQCKSPKKKNE--DDSANAVTEEVQDALLLAVDSPLDD 252
Query: 242 WVIDSAASVHISSSRRLFTSFRRGNRGHVRMENGRLSKTKGIGNIRLKTDSGTELLLQDV 301
WV+DS AS H + R + ++ G+ G V + +G G+G++R+ +G+ LL+ V
Sbjct: 253 WVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLEKV 312
Query: 302 RYVPSIRMNLISTGKLDDDSYQSEFDGNQWKLTK-SKLVAVGHKGSTVYMS 331
R++P +R NLIS G+LDD+ + F G WK+TK ++++A G K T+YM+
Sbjct: 313 RHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVLARGKKTGTLYMT 359
BLAST of Moc02g17530 vs. NCBI nr
Match:
RVW62119.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])
HSP 1 Score: 243.8 bits (621), Expect = 2.1e-60
Identity = 143/351 (40.74%), Postives = 212/351 (60.40%), Query Frame = 0
Query: 2 KFDGGNFEYWNMQIKDYLTCKKLN-KALKERPAGMKDKDWVETNEQAVTFIRLCLSMNVA 61
KFDG +F YW MQI+DYL +KL+ L +P MK ++W + Q + IRL LS +VA
Sbjct: 13 KFDGTDFAYWRMQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSRSVA 72
Query: 62 SLVANETTAIDLMKALENRYEKPSANNKVYLIRRFFNIQMEENTSVNSHINEVIKLINQV 121
V E T DLMKAL YEKPSANNKV+L+++ FN++M EN SV H+NE + NQ+
Sbjct: 73 HNVVKEKTTADLMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQHLNEFNTITNQL 132
Query: 122 ASVKITFNDEVNVIQLLTSLLESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSG 181
+SV+I F+DE+ + +L SL SWE M+ AVSNS G + LK+++I D +AEEIRR+ +G
Sbjct: 133 SSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRRRDAG 192
Query: 182 KESTSVQGLALSVE--------------KESNAVVDDAFVCVESNTE------IGNQPSE 241
+ TS G AL++E K+ N DD+ V + + +
Sbjct: 193 E--TSGSGSALNLETRGRGHFKRQCKSPKKKNE--DDSANAVTEEVHDALLLAVDSPLDD 252
Query: 242 WVIDSAASVHISSSRRLFTSFRRGNRGHVRMENGRLSKTKGIGNIRLKTDSGTELLLQDV 301
WV+DS AS H + R + ++ G+ G V + +G G+G++R+ +G+ LL+ V
Sbjct: 253 WVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLEKV 312
Query: 302 RYVPSIRMNLISTGKLDDDSYQSEFDGNQWKLTK-SKLVAVGHKGSTVYMS 331
R++P +R NLIS G+LDD+ + F G WK+TK ++++A G K T+YM+
Sbjct: 313 RHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVLARGKKTGTLYMT 359
BLAST of Moc02g17530 vs. ExPASy Swiss-Prot
Match:
P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)
HSP 1 Score: 157.1 bits (396), Expect = 3.4e-37
Identity = 120/403 (29.78%), Postives = 195/403 (48.39%), Query Frame = 0
Query: 2 KFDGGN-FEYWNMQIKDYLTCKKLNKAL---KERPAGMKDKDWVETNEQAVTFIRLCLSM 61
KF+G N F W +++D L + L+K L ++P MK +DW + +E+A + IRL LS
Sbjct: 10 KFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAASAIRLHLSD 69
Query: 62 NVASLVANETTAIDLMKALENRYEKPSANNKVYLIRRFFNIQMEENTSVNSHINEVIKLI 121
+V + + +E TA + LE+ Y + NK+YL ++ + + M E T+ SH+N LI
Sbjct: 70 DVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHLNVFNGLI 129
Query: 122 NQVASVKITFNDEVNVIQLLTSLLESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRK 181
Q+A++ + +E I LL SL S++ + T + + G +++ ++ A + E RK
Sbjct: 130 TQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILH--GKTTIELKDVTSALLLNEKMRK 189
Query: 182 GSGKESTSV--QGLALSVEKESN----------------AVVDDAFVC------------ 241
+ ++ +G S ++ SN + V + + C
Sbjct: 190 KPENQGQALITEGRGRSYQRSSNNYGRSGARGKSKNRSKSRVRNCYNCNQPGHFKRDCPN 249
Query: 242 --------------------VESNTEI-------------GNQPSEWVIDSAASVHISSS 301
V++N + SEWV+D+AAS H +
Sbjct: 250 PRKGKGETSGQKNDDNTAAMVQNNDNVVLFINEEEECMHLSGPESEWVVDTAASHHATPV 309
Query: 302 RRLFTSFRRGNRGHVRMENGRLSKTKGIGNIRLKTDSGTELLLQDVRYVPSIRMNLISTG 337
R LF + G+ G V+M N SK GIG+I +KT+ G L+L+DVR+VP +RMNLIS
Sbjct: 310 RDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHVPDLRMNLISGI 369
BLAST of Moc02g17530 vs. ExPASy TrEMBL
Match:
A0A438FJS0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_4031 PE=4 SV=1)
HSP 1 Score: 254.6 bits (649), Expect = 5.8e-64
Identity = 141/331 (42.60%), Postives = 209/331 (63.14%), Query Frame = 0
Query: 2 KFDGGNFEYWNMQIKDYLTCKKLN-KALKERPAGMKDKDWVETNEQAVTFIRLCLSMNVA 61
KFDG +F YW MQI+DYL +KL+ L +P MK ++W + Q + IRL LS +VA
Sbjct: 13 KFDGTDFAYWRMQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSRSVA 72
Query: 62 SLVANETTAIDLMKALENRYEKPSANNKVYLIRRFFNIQMEENTSVNSHINEVIKLINQV 121
V E T DLMKAL YEKPSANNKV+L+++ FN++M EN SV H+NE + NQ+
Sbjct: 73 HNVVKEKTTADLMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQHLNEFNTITNQL 132
Query: 122 ASVKITFNDEVNVIQLLTSLLESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSG 181
+SV+I F+DE+ + +L SL SWE M+ AVSNS G + LK+++I D +AEEIRR+ +G
Sbjct: 133 SSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRRRDAG 192
Query: 182 KESTSVQGLALSVEKESNAVVDDAFVCVESNTEIGNQPSEWVIDSAASVHISSSRRLFTS 241
+ TS G AL++E V DA + + + +WV+DS AS H + R + +
Sbjct: 193 E--TSGSGSALNLETRGREEVQDALLLA-----VDSPLDDWVLDSGASFHTTPHREIIQN 252
Query: 242 FRRGNRGHVRMENGRLSKTKGIGNIRLKTDSGTELLLQDVRYVPSIRMNLISTGKLDDDS 301
+ G+ G V + +G G+G++R+ +G+ LL+ VR++P +R NLIS G+LDD+
Sbjct: 253 YVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLEKVRHIPDLRRNLISVGQLDDEG 312
Query: 302 YQSEFDGNQWKLTK-SKLVAVGHKGSTVYMS 331
+ F G WK+TK ++++A G K T+YM+
Sbjct: 313 HAILFVGGTWKVTKGARVLARGKKTGTLYMT 336
BLAST of Moc02g17530 vs. ExPASy TrEMBL
Match:
A0A438GYZ2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_346 PE=4 SV=1)
HSP 1 Score: 246.1 bits (627), Expect = 2.0e-61
Identity = 135/331 (40.79%), Postives = 203/331 (61.33%), Query Frame = 0
Query: 2 KFDGGNFEYWNMQIKDYLTCKKLN-KALKERPAGMKDKDWVETNEQAVTFIRLCLSMNVA 61
KFDG +F YW MQI+DYL +KL+ L +P MK ++W + Q + IRL LS +VA
Sbjct: 13 KFDGTDFAYWRMQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSRSVA 72
Query: 62 SLVANETTAIDLMKALENRYEKPSANNKVYLIRRFFNIQMEENTSVNSHINEVIKLINQV 121
V E T DLMKAL YEKPSANNKV+L+++ FN++M EN SV H+NE + NQ+
Sbjct: 73 HNVVKEKTTADLMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQHLNEFNTITNQL 132
Query: 122 ASVKITFNDEVNVIQLLTSLLESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSG 181
+SV+I F+DE+ + +L SL SWE M+ AVSNS G + LK+++I D ++EEIRR+ G
Sbjct: 133 SSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILSEEIRRRDEG 192
Query: 182 KESTSVQGLALSVEKESNAVVDDAFVCVESNTEIGNQPSEWVIDSAASVHISSSRRLFTS 241
+ ++ S + S V C + + +WV+DS AS H + R + +
Sbjct: 193 RSNSRNSNRNRSKSRSSQQV-----QCWNCGKTVDSPLDDWVLDSGASFHTTPHREIIQN 252
Query: 242 FRRGNRGHVRMENGRLSKTKGIGNIRLKTDSGTELLLQDVRYVPSIRMNLISTGKLDDDS 301
+ G+ G V + +G G+G++R+ +G+ LL+ VR++P +R NLIS G+LDD+
Sbjct: 253 YVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLEKVRHIPDLRRNLISIGQLDDEG 312
Query: 302 YQSEFDGNQWKLTK-SKLVAVGHKGSTVYMS 331
+ F G WK+TK ++++A G K T+YM+
Sbjct: 313 HAILFVGGTWKVTKGARVLACGKKTGTLYMT 338
BLAST of Moc02g17530 vs. ExPASy TrEMBL
Match:
A0A2N9GZ72 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS35439 PE=4 SV=1)
HSP 1 Score: 246.1 bits (627), Expect = 2.0e-61
Identity = 143/351 (40.74%), Postives = 212/351 (60.40%), Query Frame = 0
Query: 2 KFDGGNFEYWNMQIKDYLTCKKLN-KALKERPAGMKDKDWVETNEQAVTFIRLCLSMNVA 61
KFDG +F YW MQI+DYL KKL+ L ++P M+D +W + Q + IRL LS ++A
Sbjct: 13 KFDGTDFGYWKMQIEDYLYGKKLHLPLLGKKPNKMEDAEWALLDRQVLGVIRLTLSRSIA 72
Query: 62 SLVANETTAIDLMKALENRYEKPSANNKVYLIRRFFNIQMEENTSVNSHINEVIKLINQV 121
V ETT + LM AL YEKPSANNKV+L+++ FN++M E +V H+NE + NQ+
Sbjct: 73 HNVVKETTTVGLMTALSGMYEKPSANNKVHLMKKLFNLKMAEGAAVAKHLNEFNTITNQL 132
Query: 122 ASVKITFNDEVNVIQLLTSLLESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSG 181
+SV+I F+DE+ + +L SL SWE M+ AVSNS G LK+ +I D ++EE+RR+ +
Sbjct: 133 SSVEIEFDDEIRALIVLASLPNSWEAMRMAVSNSAGKGKLKYDDIRDLILSEEVRRRDAC 192
Query: 182 KESTSVQGLAL---------SVEKESNAVVDDAFVCVESNTE-----IGNQPSEWVIDSA 241
++ Q EK + AVVDD V V S E + N EWV+DSA
Sbjct: 193 IDNAEGQAFVTENRDKDHKHDDEKGTTAVVDDEEVVVLSVQEQKCEHVDNIDDEWVVDSA 252
Query: 242 ASVHISSSRRLFTSFRRGNRGHVRMENGRLSKTKGIGNIRLKTDSGTELLLQDVRYVPSI 301
A+ H+ ++ LFT+++ G+ G V+M N SK GIG++ +KT+ G ++L++VR+VP +
Sbjct: 253 ATHHVVRTKELFTTYKAGDFGTVKMGNTSYSKIVGIGDVCIKTNVGFTVMLKNVRHVPDL 312
Query: 302 RMNLISTGKLDDDSYQSEFDGNQWKLTKSKL-VAVGHKGSTVYMSQLSVAR 337
NLIST +D Y + +WKL K + VA G G +YM+++ +
Sbjct: 313 CFNLISTPVMDRAGYCNHLGNGRWKLAKGPMVVARGRIGCGLYMTRVKACK 363
BLAST of Moc02g17530 vs. ExPASy TrEMBL
Match:
A0A438GME7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_3541 PE=4 SV=1)
HSP 1 Score: 244.6 bits (623), Expect = 6.0e-61
Identity = 143/351 (40.74%), Postives = 213/351 (60.68%), Query Frame = 0
Query: 2 KFDGGNFEYWNMQIKDYLTCKKLN-KALKERPAGMKDKDWVETNEQAVTFIRLCLSMNVA 61
KFDG +F YW MQI+DYL +KL+ L +P MK ++W + Q + IRL LS +VA
Sbjct: 13 KFDGTDFAYWRMQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSRSVA 72
Query: 62 SLVANETTAIDLMKALENRYEKPSANNKVYLIRRFFNIQMEENTSVNSHINEVIKLINQV 121
V E T DLMKAL YEKPSANNKV+L+++ FN++M EN SV H+NE + NQ+
Sbjct: 73 HNVVKEKTTADLMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQHLNEFNTITNQL 132
Query: 122 ASVKITFNDEVNVIQLLTSLLESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSG 181
+SV+I F+DE+ + +L SL SWE M+ AVSNS G + LK+++I D +AEEIRR+ +G
Sbjct: 133 SSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRRRDAG 192
Query: 182 KESTSVQGLALSVE--------------KESNAVVDDAFVCVESNTE------IGNQPSE 241
+ TS G AL++E K+ N DD+ V + + + +
Sbjct: 193 E--TSGSGSALNLETRGRGHFKRQCKSPKKKNE--DDSANAVTEEVQDALLLAVDSPLDD 252
Query: 242 WVIDSAASVHISSSRRLFTSFRRGNRGHVRMENGRLSKTKGIGNIRLKTDSGTELLLQDV 301
WV+DS AS H + R + ++ G+ G V + +G G+G++R+ +G+ LL+ V
Sbjct: 253 WVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLEKV 312
Query: 302 RYVPSIRMNLISTGKLDDDSYQSEFDGNQWKLTK-SKLVAVGHKGSTVYMS 331
R++P +R NLIS G+LDD+ + F G WK+TK ++++A G K T+YM+
Sbjct: 313 RHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVLARGKKTGTLYMT 359
BLAST of Moc02g17530 vs. ExPASy TrEMBL
Match:
A0A438C3I2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_2500 PE=4 SV=1)
HSP 1 Score: 244.6 bits (623), Expect = 6.0e-61
Identity = 143/351 (40.74%), Postives = 213/351 (60.68%), Query Frame = 0
Query: 2 KFDGGNFEYWNMQIKDYLTCKKLN-KALKERPAGMKDKDWVETNEQAVTFIRLCLSMNVA 61
KFDG +F YW MQI+DYL +KL+ L +P MK ++W + Q + IRL LS +VA
Sbjct: 13 KFDGTDFAYWRMQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSRSVA 72
Query: 62 SLVANETTAIDLMKALENRYEKPSANNKVYLIRRFFNIQMEENTSVNSHINEVIKLINQV 121
V E T DLMKAL YEKPSANNKV+L+++ FN++M EN SV H+NE + NQ+
Sbjct: 73 HNVVKEKTTADLMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQHLNEFNTITNQL 132
Query: 122 ASVKITFNDEVNVIQLLTSLLESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSG 181
+SV+I F+DE+ + +L SL SWE M+ AVSNS G + LK+++I D +AEEIRR+ +G
Sbjct: 133 SSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRRRDAG 192
Query: 182 KESTSVQGLALSVE--------------KESNAVVDDAFVCVESNTE------IGNQPSE 241
+ TS G AL++E K+ N DD+ V + + + +
Sbjct: 193 E--TSGSGSALNLETRGRGHFKRQCKSPKKKNE--DDSANAVTEEVQDALLLAVDSPLDD 252
Query: 242 WVIDSAASVHISSSRRLFTSFRRGNRGHVRMENGRLSKTKGIGNIRLKTDSGTELLLQDV 301
WV+DS AS H + R + ++ G+ G V + +G G+G++R+ +G+ LL+ V
Sbjct: 253 WVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLEKV 312
Query: 302 RYVPSIRMNLISTGKLDDDSYQSEFDGNQWKLTK-SKLVAVGHKGSTVYMS 331
R++P +R NLIS G+LDD+ + F G WK+TK ++++A G K T+YM+
Sbjct: 313 RHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVLARGKKTGTLYMT 359
BLAST of Moc02g17530 vs. TAIR 10
Match:
AT3G29785.1 (unknown protein; Has 90 Blast hits to 90 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 67.0 bits (162), Expect = 3.3e-11
Identity = 36/88 (40.91%), Postives = 51/88 (57.95%), Query Frame = 0
Query: 2 KFDGGNFEYWNMQIKDYLTCKKLNKALKERPAGMKDKDWVETNEQAVTFIRLCLSMNVAS 61
K DG ++ + M+I+DYL KKL++ L ++ M DW Q + IRL +S N+A
Sbjct: 8 KVDGTSYSFCRMKIEDYLYGKKLHQPLGKKVETMSQDDWNILYRQVLDVIRLTISKNIAH 67
Query: 62 LVANETTAIDLMKALENRYEKPSANNKV 90
VA E + LMK L + Y+KPS NN V
Sbjct: 68 NVAKEKSPDGLMKVLSDIYKKPSTNNTV 95
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
RVW60263.1 | 1.2e-63 | 42.60 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera] | [more] |
RVW77419.1 | 4.2e-61 | 40.79 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera] | [more] |
RVW73393.1 | 1.2e-60 | 40.74 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera] | [more] |
RVW17810.1 | 1.2e-60 | 40.74 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera] | [more] |
RVW62119.1 | 2.1e-60 | 40.74 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera] | [more] |
Match Name | E-value | Identity | Description | |
P10978 | 3.4e-37 | 29.78 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... | [more] |
Match Name | E-value | Identity | Description | |
A0A438FJS0 | 5.8e-64 | 42.60 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... | [more] |
A0A438GYZ2 | 2.0e-61 | 40.79 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... | [more] |
A0A2N9GZ72 | 2.0e-61 | 40.74 | Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS35439 PE=4 SV=1 | [more] |
A0A438GME7 | 6.0e-61 | 40.74 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... | [more] |
A0A438C3I2 | 6.0e-61 | 40.74 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... | [more] |
Match Name | E-value | Identity | Description | |
AT3G29785.1 | 3.3e-11 | 40.91 | unknown protein; Has 90 Blast hits to 90 proteins in 7 species: Archae - 0; Bact... | [more] |