Moc02g17320 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc02g17320
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrotrans_gag domain-containing protein
Locationchr2: 12972489 .. 12972917 (-)
RNA-Seq ExpressionMoc02g17320
SyntenyMoc02g17320
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGGATATCACGAGGTGGTGGAGGCGACCATGTGTCTGGTGTTCTCGACAACTTTGAGTGGGTCGGCCAGGGTATGGTTTCGATAGCTGAAGGGAGGTTCGATCTCGAGCTTCAAGAACCTGGCCAGGGCATTTGTGACCTAGTTCGTGGGAGGACGAAGCCGAAGCCGACTCGTGGCTTATCTTCTGACTATCAAACAGAGGGCAACAAAGAGCCTTCACGACTATATGGCTCGATTCAATGAGGAGAAATTACAGGTTGAGGGTGTCACGGATGCAGTATCTCTACTAGCTTTCATGTCCGGCATCAAGGACGAACACCTTTCATTCTTCTTTGGGAAAAAGACGCCAAACGTCTTCTCGGAGGCACTCAGCCGAGCTCAGATGTACATGAGCGCCAGAGAGTTCTTCCACTCAAAGAAATAG

mRNA sequence

ATGGATGGATATCACGAGGTGGTGGAGGCGACCATGTGTCTGGTGTTCTCGACAACTTTGAGTGGGTCGGCCAGGAGGGCAACAAAGAGCCTTCACGACTATATGGCTCGATTCAATGAGGAGAAATTACAGGTTGAGGGTGTCACGGATGCAGTATCTCTACTAGCTTTCATGTCCGGCATCAAGGACGAACACCTTTCATTCTTCTTTGGGAAAAAGACGCCAAACGTCTTCTCGGAGGCACTCAGCCGAGCTCAGATGTACATGAGCGCCAGAGAGTTCTTCCACTCAAAGAAATAG

Coding sequence (CDS)

ATGGATGGATATCACGAGGTGGTGGAGGCGACCATGTGTCTGGTGTTCTCGACAACTTTGAGTGGGTCGGCCAGGAGGGCAACAAAGAGCCTTCACGACTATATGGCTCGATTCAATGAGGAGAAATTACAGGTTGAGGGTGTCACGGATGCAGTATCTCTACTAGCTTTCATGTCCGGCATCAAGGACGAACACCTTTCATTCTTCTTTGGGAAAAAGACGCCAAACGTCTTCTCGGAGGCACTCAGCCGAGCTCAGATGTACATGAGCGCCAGAGAGTTCTTCCACTCAAAGAAATAG

Protein sequence

MDGYHEVVEATMCLVFSTTLSGSARRATKSLHDYMARFNEEKLQVEGVTDAVSLLAFMSGIKDEHLSFFFGKKTPNVFSEALSRAQMYMSAREFFHSKK
Homology
[Close]
BLAST of Moc02g17320 vs. NCBI nr
Match: XP_022158830.1 (uncharacterized protein LOC111025293 [Momordica charantia])

HSP 1 Score: 129.4 bits (324), Expect = 1.7e-26
Identity = 77/148 (52.03%), Postives = 87/148 (58.78%), Query Frame = 0 

Query: 1   MDGYHE------VVEATMCLVFSTTLSGSAR----------------------------- 60
           +D Y E      V EA  C VFSTTL+GSAR                             
Sbjct: 211 LDAYREWMDIYGVSEAVRCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFVTQFVGGR 270

Query: 61  --------------RATKSLHDYMARFNEEKLQVEGVTDAVSLLAFMSGIKDEHLSFFFG 100
                         R T+SL DY+ARFNEEKLQVEG+TDAVSLLAFMSG++DEHLSF FG
Sbjct: 271 CRSRPVAYLLTIKQRTTESLRDYVARFNEEKLQVEGLTDAVSLLAFMSGVRDEHLSFSFG 330

[Close]
BLAST of Moc02g17320 vs. NCBI nr
Match: XP_022150035.1 (uncharacterized protein LOC111018307 [Momordica charantia])

HSP 1 Score: 128.3 bits (321), Expect = 3.8e-26
Identity = 78/148 (52.70%), Postives = 87/148 (58.78%), Query Frame = 0 

Query: 1   MDGYHE------VVEATMCLVFSTTLSGSAR----------------------------- 60
           +D Y E      V EA  C VFSTTLSGSAR                             
Sbjct: 31  LDAYREWMDIYGVSEAVKCRVFSTTLSGSARVWFRQLKRGSISSFKSLAKAFVTQFIGGR 90

Query: 61  --------------RATKSLHDYMARFNEEKLQVEGVTDAVSLLAFMSGIKDEHLSFFFG 100
                         RAT+SLHDY+ARFNEEKLQVEG+T+AVSL+AFMS I+DEHLSF FG
Sbjct: 91  SRSRPVAYLLTIKQRATESLHDYVARFNEEKLQVEGLTNAVSLMAFMSDIRDEHLSFSFG 150

[Close]
BLAST of Moc02g17320 vs. NCBI nr
Match: XP_022159109.1 (uncharacterized protein LOC111025548 [Momordica charantia])

HSP 1 Score: 120.2 bits (300), Expect = 1.0e-23
Identity = 72/148 (48.65%), Postives = 85/148 (57.43%), Query Frame = 0 

Query: 1   MDGYHE------VVEATMCLVFSTTLSGSAR----------------------------- 60
           +D Y E      V +A  C VFSTTL+GSAR                             
Sbjct: 116 LDAYREWMDIYGVSDAIRCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFMTQFVGGR 175

Query: 61  --------------RATKSLHDYMARFNEEKLQVEGVTDAVSLLAFMSGIKDEHLSFFFG 100
                         R  +SLHDY+ARFNEEKLQ+EG+TDAVSLLAFMSG++DEHLSF F 
Sbjct: 176 CRSRPVAYLLTIKQRTAESLHDYVARFNEEKLQLEGLTDAVSLLAFMSGVRDEHLSFSFE 235

[Close]
BLAST of Moc02g17320 vs. NCBI nr
Match: XP_022159368.1 (uncharacterized protein LOC111025785 [Momordica charantia])

HSP 1 Score: 119.4 bits (298), Expect = 1.8e-23
Identity = 56/75 (74.67%), Postives = 67/75 (89.33%), Query Frame = 0 

Query: 25  RRATKSLHDYMARFNEEKLQVEGVTDAVSLLAFMSGIKDEHLSFFFGKKTPNVFSEALSR 84
           +R T+SLHDY+ARFN+EKLQ+E +TD VSLLAFMSG++DEHLSF FGKKTP+ FSE LSR
Sbjct: 68  QRTTESLHDYVARFNKEKLQIESLTDVVSLLAFMSGVRDEHLSFSFGKKTPSTFSETLSR 127

Query: 85  AQMYMSAREFFHSKK 100
           AQ YMSA EFF+SK+
Sbjct: 128 AQRYMSAGEFFYSKR 142

[Close]
BLAST of Moc02g17320 vs. NCBI nr
Match: XP_022142767.1 (uncharacterized protein LOC111012805 [Momordica charantia])

HSP 1 Score: 119.0 bits (297), Expect = 2.3e-23
Identity = 56/75 (74.67%), Postives = 68/75 (90.67%), Query Frame = 0 

Query: 25  RRATKSLHDYMARFNEEKLQVEGVTDAVSLLAFMSGIKDEHLSFFFGKKTPNVFSEALSR 84
           +R T+SLHDY+ RFN+EKLQVEG+TDAVSLLAF+ G++DEHLSF FGK+TP+ FSEALSR
Sbjct: 109 KRTTESLHDYVTRFNKEKLQVEGLTDAVSLLAFIFGVRDEHLSFSFGKRTPSTFSEALSR 168

Query: 85  AQMYMSAREFFHSKK 100
           AQ YMSA EFF+SK+
Sbjct: 169 AQRYMSAGEFFYSKR 183

[Close]
BLAST of Moc02g17320 vs. ExPASy TrEMBL
Match: A0A6J1DWY0 (uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025293 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 8.2e-27
Identity = 77/148 (52.03%), Postives = 87/148 (58.78%), Query Frame = 0 

Query: 1   MDGYHE------VVEATMCLVFSTTLSGSAR----------------------------- 60
           +D Y E      V EA  C VFSTTL+GSAR                             
Sbjct: 211 LDAYREWMDIYGVSEAVRCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFVTQFVGGR 270

Query: 61  --------------RATKSLHDYMARFNEEKLQVEGVTDAVSLLAFMSGIKDEHLSFFFG 100
                         R T+SL DY+ARFNEEKLQVEG+TDAVSLLAFMSG++DEHLSF FG
Sbjct: 271 CRSRPVAYLLTIKQRTTESLRDYVARFNEEKLQVEGLTDAVSLLAFMSGVRDEHLSFSFG 330

[Close]
BLAST of Moc02g17320 vs. ExPASy TrEMBL
Match: A0A6J1D7D2 (uncharacterized protein LOC111018307 OS=Momordica charantia OX=3673 GN=LOC111018307 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.8e-26
Identity = 78/148 (52.70%), Postives = 87/148 (58.78%), Query Frame = 0 

Query: 1   MDGYHE------VVEATMCLVFSTTLSGSAR----------------------------- 60
           +D Y E      V EA  C VFSTTLSGSAR                             
Sbjct: 31  LDAYREWMDIYGVSEAVKCRVFSTTLSGSARVWFRQLKRGSISSFKSLAKAFVTQFIGGR 90

Query: 61  --------------RATKSLHDYMARFNEEKLQVEGVTDAVSLLAFMSGIKDEHLSFFFG 100
                         RAT+SLHDY+ARFNEEKLQVEG+T+AVSL+AFMS I+DEHLSF FG
Sbjct: 91  SRSRPVAYLLTIKQRATESLHDYVARFNEEKLQVEGLTNAVSLMAFMSDIRDEHLSFSFG 150

[Close]
BLAST of Moc02g17320 vs. ExPASy TrEMBL
Match: A0A6J1E1E7 (uncharacterized protein LOC111025548 OS=Momordica charantia OX=3673 GN=LOC111025548 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 5.0e-24
Identity = 72/148 (48.65%), Postives = 85/148 (57.43%), Query Frame = 0 

Query: 1   MDGYHE------VVEATMCLVFSTTLSGSAR----------------------------- 60
           +D Y E      V +A  C VFSTTL+GSAR                             
Sbjct: 116 LDAYREWMDIYGVSDAIRCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFMTQFVGGR 175

Query: 61  --------------RATKSLHDYMARFNEEKLQVEGVTDAVSLLAFMSGIKDEHLSFFFG 100
                         R  +SLHDY+ARFNEEKLQ+EG+TDAVSLLAFMSG++DEHLSF F 
Sbjct: 176 CRSRPVAYLLTIKQRTAESLHDYVARFNEEKLQLEGLTDAVSLLAFMSGVRDEHLSFSFE 235

[Close]
BLAST of Moc02g17320 vs. ExPASy TrEMBL
Match: A0A6J1DYL6 (uncharacterized protein LOC111025785 OS=Momordica charantia OX=3673 GN=LOC111025785 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 8.5e-24
Identity = 56/75 (74.67%), Postives = 67/75 (89.33%), Query Frame = 0 

Query: 25  RRATKSLHDYMARFNEEKLQVEGVTDAVSLLAFMSGIKDEHLSFFFGKKTPNVFSEALSR 84
           +R T+SLHDY+ARFN+EKLQ+E +TD VSLLAFMSG++DEHLSF FGKKTP+ FSE LSR
Sbjct: 68  QRTTESLHDYVARFNKEKLQIESLTDVVSLLAFMSGVRDEHLSFSFGKKTPSTFSETLSR 127

Query: 85  AQMYMSAREFFHSKK 100
           AQ YMSA EFF+SK+
Sbjct: 128 AQRYMSAGEFFYSKR 142

[Close]
BLAST of Moc02g17320 vs. ExPASy TrEMBL
Match: A0A6J1CNT2 (uncharacterized protein LOC111012805 OS=Momordica charantia OX=3673 GN=LOC111012805 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.1e-23
Identity = 56/75 (74.67%), Postives = 68/75 (90.67%), Query Frame = 0 

Query: 25  RRATKSLHDYMARFNEEKLQVEGVTDAVSLLAFMSGIKDEHLSFFFGKKTPNVFSEALSR 84
           +R T+SLHDY+ RFN+EKLQVEG+TDAVSLLAF+ G++DEHLSF FGK+TP+ FSEALSR
Sbjct: 109 KRTTESLHDYVTRFNKEKLQVEGLTDAVSLLAFIFGVRDEHLSFSFGKRTPSTFSEALSR 168

Query: 85  AQMYMSAREFFHSKK 100
           AQ YMSA EFF+SK+
Sbjct: 169 AQRYMSAGEFFYSKR 183

The following BLAST results are available for this feature:
BLAST of Moc02g17320 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022158830.11.7e-2652.03uncharacterized protein LOC111025293 [Momordica charantia][more]
XP_022150035.13.8e-2652.70uncharacterized protein LOC111018307 [Momordica charantia][more]
XP_022159109.11.0e-2348.65uncharacterized protein LOC111025548 [Momordica charantia][more]
XP_022159368.11.8e-2374.67uncharacterized protein LOC111025785 [Momordica charantia][more]
XP_022142767.12.3e-2374.67uncharacterized protein LOC111012805 [Momordica charantia][more]
BLAST of Moc02g17320 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc02g17320 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DWY08.2e-2752.03uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1D7D21.8e-2652.70uncharacterized protein LOC111018307 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
A0A6J1E1E75.0e-2448.65uncharacterized protein LOC111025548 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1DYL68.5e-2474.67uncharacterized protein LOC111025785 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1CNT21.1e-2374.67uncharacterized protein LOC111012805 OS=Momordica charantia OX=3673 GN=LOC111012... [more]
BLAST of Moc02g17320 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc02g17320.1Moc02g17320.1mRNA