Moc02g17250 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc02g17250
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon 17.6
Locationchr2: 12943650 .. 12944936 (+)
RNA-Seq ExpressionMoc02g17250
SyntenyMoc02g17250
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCCAGAAAGTGTACCAGTTTCCCGGACATCCTATAGAAGACCCACATTCGCATCTGAAGTTTTTCATGGGAGTTTGCAATTCATTTAAGGATGAAAGATGCAGGACAAAAGTGCTGCAGCTTAAGTTGTTCCCCTATTCAGTCAGAGATGAAGCAAGAACATGGTTGGAGTCACTTCCTTCATAATCAATTACATGTTGGGATGACTTGGCCAAATTTTTTTTGATGAAGTACTTCCCACCCAACAAAAACGCTAAATATAGAAGTGATATCAACAACTTTCAGCAATTTGCTAGGGAGTCAGTGAGCGAATCTTAGGAGCGTTTCAAGCGTTGTACTTCTTAAAAAATACCCCCACCATGGAATCCCAAAATGCATCCAGTTCGAAACGTATTACAATTGTTTGGATGATGTTACGTGCTTAGTCATAGATTTGTCAACAAATGGGCTTTGCTAGCGATACCCTTTGTTGAAGCATTCAACATTTTATAGAGAATATCTTCGAACAACCATTCATGGTCTGACCCTAGAGCCACCCAAGGGAGAGGAAGCAAGGGACTTAATGAATCTATGCCATACTCTCCTCTGAATTTAAAGATTGAGAACCTGACAGGCTTAGTGATGAGAAGCATGACACAACAAAGTACAGTGGGAACATCCGTCGATAAAGCAAATGTTCCACATCCAAGGGATTTCTTATCCTTTTGTGAAAGAGATCATCATTATAATAATTGCCCTAGCAATCTGGAGTCGGTTTACTATTTATGAATCCGTGAACAGTAGAAACAACTAATACTCCAATACGTATAACCCGACTGGAGAAATCACCTTAACTTTAGTTGGAGTGGAAATCAGGGAGGCAATAATTCTGGTACATCCAATGCTCCAGCAAATTAATAGAAAAGGAAGTTATCCCCTGGTTTTGCGAATCAAGGTCAGGTGGTACCACCGAAGCTTTCAGAAGGATGGTTTGCATCGTTAGAAAAGCTGATGAAGCAGTATATGTCCAATAATGACGTTGTTGTGCAAAGCGAGGCCGCATCACTAAGAAATCTAGGGCTGCAAGTAGGCCAGTTAGCAACCGATTTGAAGAGCAGACCTTACGGAGCAGTGCCGAGTGATACTGAAGTACCAAAGAGAGATGTCAAGGAGCAATGTAAGGCTCTCACACTACGAAGTGGGAAAGCATTACCGCCAGCACATCCGAATGCTACATGGGCATTGAGCAGCCTACTCAAGAAGAATCAGGAGAATCTCAGCCAACGAAAGATAGTGGGCCAGTAG

mRNA sequence

ATGCTCCAGAAAGTGTACCAGTTTCCCGGACATCCTATAGAAGACCCACATTCGCATCTGAAGTTTTTCATGGGAGTTTGCAATTCATTTAAGGATGAAAGATGCAGGACAAAAGTGCTGCAGCTTAAGTTGTTCCCCTATTCAGTCAGAGATGAAGCAAGAACATGGCTTAGTGATGAGAAGCATGACACAACAAAGTACAGTGGGAACATCCGTCAGGTGGTACCACCGAAGCTTTCAGAAGGATGGTTTGCATCGTTAGAAAAGCTGATGAAGCAGTATATGTCCAATAATGACGTTGTTGTGCAAAGCGAGGCCGCATCACTAAGAAATCTAGGGCTGCAAGTAGGCCAGTTAGCAACCGATTTGAAGAGCAGACCTTACGGAGCAGTGCCGAGTGATACTGAAGTACCAAAGAGAGATGTCAAGGAGCAATGTAAGGCTCTCACACTACGAAGTGGGAAAGCATTACCGCCAGCACATCCGAATGCTACATGGGCATTGAGCAGCCTACTCAAGAAGAATCAGGAGAATCTCAGCCAACGAAAGATAGTGGGCCAGTAG

Coding sequence (CDS)

ATGCTCCAGAAAGTGTACCAGTTTCCCGGACATCCTATAGAAGACCCACATTCGCATCTGAAGTTTTTCATGGGAGTTTGCAATTCATTTAAGGATGAAAGATGCAGGACAAAAGTGCTGCAGCTTAAGTTGTTCCCCTATTCAGTCAGAGATGAAGCAAGAACATGGCTTAGTGATGAGAAGCATGACACAACAAAGTACAGTGGGAACATCCGTCAGGTGGTACCACCGAAGCTTTCAGAAGGATGGTTTGCATCGTTAGAAAAGCTGATGAAGCAGTATATGTCCAATAATGACGTTGTTGTGCAAAGCGAGGCCGCATCACTAAGAAATCTAGGGCTGCAAGTAGGCCAGTTAGCAACCGATTTGAAGAGCAGACCTTACGGAGCAGTGCCGAGTGATACTGAAGTACCAAAGAGAGATGTCAAGGAGCAATGTAAGGCTCTCACACTACGAAGTGGGAAAGCATTACCGCCAGCACATCCGAATGCTACATGGGCATTGAGCAGCCTACTCAAGAAGAATCAGGAGAATCTCAGCCAACGAAAGATAGTGGGCCAGTAG

Protein sequence

MLQKVYQFPGHPIEDPHSHLKFFMGVCNSFKDERCRTKVLQLKLFPYSVRDEARTWLSDEKHDTTKYSGNIRQVVPPKLSEGWFASLEKLMKQYMSNNDVVVQSEAASLRNLGLQVGQLATDLKSRPYGAVPSDTEVPKRDVKEQCKALTLRSGKALPPAHPNATWALSSLLKKNQENLSQRKIVGQ
Homology
[Close]
BLAST of Moc02g17250 vs. NCBI nr
Match: XP_022157438.1 (uncharacterized protein LOC111024136 [Momordica charantia])

HSP 1 Score: 161.8 bits (408), Expect = 5.8e-36
Identity = 112/308 (36.36%), Postives = 130/308 (42.21%), Query Frame = 0 

Query: 1   MLQKVYQFPGHPIEDPHSHLKFFMGVCNSFKDERCRTKVLQLKLFPYSVRDEARTWLS-- 60
           MLQ V +F GH  EDPH HLKF MGVCNSFKDE    KV++LKLFP+S+RDEARTWL   
Sbjct: 4   MLQTVGKFHGHATEDPHQHLKFLMGVCNSFKDEGLSKKVMRLKLFPHSLRDEARTWLESL 63

Query: 61  -----------------------------DEKHDTTKYSG-------------------- 120
                                        +E ++  ++ G                    
Sbjct: 64  PSESITSWDDLAEKFLMKYFPPNKNAKYRNEINNFQQFDGESQNPAEAFNILERISSNNH 123

Query: 121 -----------------------------------------------------NIRQV-- 165
                                                                N+ Q+  
Sbjct: 124 SWFDPKAVQGKSSKALVESESYTTLNSKIENLTDLVMRSITQQSPAGASVGMXNVNQIQG 183

[Close]
BLAST of Moc02g17250 vs. NCBI nr
Match: XP_022158598.1 (uncharacterized protein LOC111025053 [Momordica charantia])

HSP 1 Score: 149.8 bits (377), Expect = 2.3e-32
Identity = 112/325 (34.46%), Postives = 123/325 (37.85%), Query Frame = 0 

Query: 1   MLQKVYQFPGHPIEDPHSHLKFFMGVCNSFKDERCRTKVLQLKLFPYSVRDEARTW---- 60
           M+  V QF GH  E PH HLKFFMGV NSFKDE     VL+LKLF YS+R EARTW    
Sbjct: 4   MIHIVGQFHGHATEVPHQHLKFFMGVWNSFKDEGLSKGVLRLKLFSYSLRGEARTWLESL 63

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 64  SSEYITSWDDLTEKFLMKYFLPSKRLFQRCPYHGIPGSIQIETYYKGLDNATRLVIDASP 123

Query: 121 -------------------------------------------------------LSDEK 165
                                                                  L+D  
Sbjct: 124 NGALLVKPYAKALNILERISSSNHSWSDHRAIEGKSSKELVESESYTTLNSKIEILTDLN 183

[Close]
BLAST of Moc02g17250 vs. NCBI nr
Match: XP_038889254.1 (uncharacterized protein LOC120079150 [Benincasa hispida])

HSP 1 Score: 124.8 bits (312), Expect = 7.9e-25
Identity = 70/167 (41.92%), Postives = 100/167 (59.88%), Query Frame = 0 

Query: 1   MLQKVYQFPGHPIEDPHSHLKFFMGVCNSFKDERCRTKVLQLKLFPYSVRDEARTWLSD- 60
           MLQ   QF G   EDPH+H+K F+  CNSF       + ++L LFPYS+RD+A+ W S  
Sbjct: 31  MLQTADQFGGARGEDPHAHMKCFLETCNSFLIPGITPEAIRLSLFPYSLRDDAKKWASSL 90

Query: 61  --------EKHDTTKYSGNIRQVVPPKLSEGWFASLEKLMKQYMSNNDVVVQSEAASLRN 120
                   E H+   YS      +  K        L+++ K  M  ND +++S+A+S+RN
Sbjct: 91  EPWEITTWENHEAATYS------IMDKSYNEAKEILDRIAKHNMEWNDALLKSQASSIRN 150

Query: 121 LGLQVGQLATDLKSRPYGAVPSDTEVP-KRDVKEQCKALTLRSGKAL 158
           L +QVGQ+A++LK+RP   +PS+TE P   + KEQC A+TLRSGK+L
Sbjct: 151 LEIQVGQIASELKNRPPKVLPSNTETPGNSNRKEQCHAVTLRSGKSL 191

[Close]
BLAST of Moc02g17250 vs. NCBI nr
Match: XP_022159060.1 (uncharacterized protein LOC111025500 [Momordica charantia])

HSP 1 Score: 113.2 bits (282), Expect = 2.4e-21
Identity = 55/77 (71.43%), Postives = 63/77 (81.82%), Query Frame = 0 

Query: 88  EKLMKQYMSNNDVVVQSEAASLRNLGLQVGQLATDLKSRPYGAVPSDTEVPKRDVKEQCK 147
           ++ M +YM NND  VQS+A SLRNL +QVGQLATDLKS+P G +PSD +VPKRD KEQC 
Sbjct: 212 KETMLKYMENNDTTVQSQAVSLRNLEMQVGQLATDLKSKPKGVLPSDIKVPKRDGKEQCN 271

Query: 148 ALTLRSGKALPPAHPNA 165
           ALTLRSGK LP AHPNA
Sbjct: 272 ALTLRSGKTLPTAHPNA 288

[Close]
BLAST of Moc02g17250 vs. NCBI nr
Match: XP_022144016.1 (uncharacterized protein LOC111013805 [Momordica charantia])

HSP 1 Score: 111.7 bits (278), Expect = 6.9e-21
Identity = 57/70 (81.43%), Postives = 59/70 (84.29%), Query Frame = 0 

Query: 95  MSNNDVVVQSEAASLRNLGLQVGQLATDLKSRPYGAVPSDTEVPKRDVKEQCKALTLRSG 154
           M+NND  VQS+ ASLRNL LQVGQLA DLKSR  GA PSDTEVPKRD KEQCKALTLRSG
Sbjct: 1   MANNDATVQSQVASLRNLELQVGQLAMDLKSRSIGASPSDTEVPKRDGKEQCKALTLRSG 60

Query: 155 KALPPAHPNA 165
           KALPP H NA
Sbjct: 61  KALPPTHLNA 70

[Close]
BLAST of Moc02g17250 vs. ExPASy TrEMBL
Match: A0A6J1DTD1 (uncharacterized protein LOC111024136 OS=Momordica charantia OX=3673 GN=LOC111024136 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 2.8e-36
Identity = 112/308 (36.36%), Postives = 130/308 (42.21%), Query Frame = 0 

Query: 1   MLQKVYQFPGHPIEDPHSHLKFFMGVCNSFKDERCRTKVLQLKLFPYSVRDEARTWLS-- 60
           MLQ V +F GH  EDPH HLKF MGVCNSFKDE    KV++LKLFP+S+RDEARTWL   
Sbjct: 4   MLQTVGKFHGHATEDPHQHLKFLMGVCNSFKDEGLSKKVMRLKLFPHSLRDEARTWLESL 63

Query: 61  -----------------------------DEKHDTTKYSG-------------------- 120
                                        +E ++  ++ G                    
Sbjct: 64  PSESITSWDDLAEKFLMKYFPPNKNAKYRNEINNFQQFDGESQNPAEAFNILERISSNNH 123

Query: 121 -----------------------------------------------------NIRQV-- 165
                                                                N+ Q+  
Sbjct: 124 SWFDPKAVQGKSSKALVESESYTTLNSKIENLTDLVMRSITQQSPAGASVGMXNVNQIQG 183

[Close]
BLAST of Moc02g17250 vs. ExPASy TrEMBL
Match: A0A6J1DWK1 (uncharacterized protein LOC111025053 OS=Momordica charantia OX=3673 GN=LOC111025053 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 1.1e-32
Identity = 112/325 (34.46%), Postives = 123/325 (37.85%), Query Frame = 0 

Query: 1   MLQKVYQFPGHPIEDPHSHLKFFMGVCNSFKDERCRTKVLQLKLFPYSVRDEARTW---- 60
           M+  V QF GH  E PH HLKFFMGV NSFKDE     VL+LKLF YS+R EARTW    
Sbjct: 4   MIHIVGQFHGHATEVPHQHLKFFMGVWNSFKDEGLSKGVLRLKLFSYSLRGEARTWLESL 63

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 64  SSEYITSWDDLTEKFLMKYFLPSKRLFQRCPYHGIPGSIQIETYYKGLDNATRLVIDASP 123

Query: 121 -------------------------------------------------------LSDEK 165
                                                                  L+D  
Sbjct: 124 NGALLVKPYAKALNILERISSSNHSWSDHRAIEGKSSKELVESESYTTLNSKIEILTDLN 183

[Close]
BLAST of Moc02g17250 vs. ExPASy TrEMBL
Match: A0A6J1DXK5 (uncharacterized protein LOC111025500 OS=Momordica charantia OX=3673 GN=LOC111025500 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.2e-21
Identity = 55/77 (71.43%), Postives = 63/77 (81.82%), Query Frame = 0 

Query: 88  EKLMKQYMSNNDVVVQSEAASLRNLGLQVGQLATDLKSRPYGAVPSDTEVPKRDVKEQCK 147
           ++ M +YM NND  VQS+A SLRNL +QVGQLATDLKS+P G +PSD +VPKRD KEQC 
Sbjct: 212 KETMLKYMENNDTTVQSQAVSLRNLEMQVGQLATDLKSKPKGVLPSDIKVPKRDGKEQCN 271

Query: 148 ALTLRSGKALPPAHPNA 165
           ALTLRSGK LP AHPNA
Sbjct: 272 ALTLRSGKTLPTAHPNA 288

[Close]
BLAST of Moc02g17250 vs. ExPASy TrEMBL
Match: A0A6J1CS22 (uncharacterized protein LOC111013805 OS=Momordica charantia OX=3673 GN=LOC111013805 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.4e-21
Identity = 57/70 (81.43%), Postives = 59/70 (84.29%), Query Frame = 0 

Query: 95  MSNNDVVVQSEAASLRNLGLQVGQLATDLKSRPYGAVPSDTEVPKRDVKEQCKALTLRSG 154
           M+NND  VQS+ ASLRNL LQVGQLA DLKSR  GA PSDTEVPKRD KEQCKALTLRSG
Sbjct: 1   MANNDATVQSQVASLRNLELQVGQLAMDLKSRSIGASPSDTEVPKRDGKEQCKALTLRSG 60

Query: 155 KALPPAHPNA 165
           KALPP H NA
Sbjct: 61  KALPPTHLNA 70

[Close]
BLAST of Moc02g17250 vs. ExPASy TrEMBL
Match: A0A6J1DDS7 (uncharacterized protein LOC111019599 OS=Momordica charantia OX=3673 GN=LOC111019599 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 4.5e-18
Identity = 51/70 (72.86%), Postives = 57/70 (81.43%), Query Frame = 0 

Query: 95  MSNNDVVVQSEAASLRNLGLQVGQLATDLKSRPYGAVPSDTEVPKRDVKEQCKALTLRSG 154
           M  ND+ VQS+AASLRNL +Q+GQLATDLKSRP  A+ SD +VPKRD KEQC ALTLRSG
Sbjct: 1   MEKNDITVQSQAASLRNLEMQMGQLATDLKSRPNRALSSDIKVPKRDEKEQCYALTLRSG 60

Query: 155 KALPPAHPNA 165
           K LP A PNA
Sbjct: 61  KTLPTARPNA 70

The following BLAST results are available for this feature:
BLAST of Moc02g17250 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022157438.15.8e-3636.36uncharacterized protein LOC111024136 [Momordica charantia][more]
XP_022158598.12.3e-3234.46uncharacterized protein LOC111025053 [Momordica charantia][more]
XP_038889254.17.9e-2541.92uncharacterized protein LOC120079150 [Benincasa hispida][more]
XP_022159060.12.4e-2171.43uncharacterized protein LOC111025500 [Momordica charantia][more]
XP_022144016.16.9e-2181.43uncharacterized protein LOC111013805 [Momordica charantia][more]
BLAST of Moc02g17250 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc02g17250 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DTD12.8e-3636.36uncharacterized protein LOC111024136 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A6J1DWK11.1e-3234.46uncharacterized protein LOC111025053 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1DXK51.2e-2171.43uncharacterized protein LOC111025500 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1CS223.4e-2181.43uncharacterized protein LOC111013805 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A6J1DDS74.5e-1872.86uncharacterized protein LOC111019599 OS=Momordica charantia OX=3673 GN=LOC111019... [more]
BLAST of Moc02g17250 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc02g17250.1Moc02g17250.1mRNA