Moc02g17070 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc02g17070
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrotrans_gag domain-containing protein
Locationchr2: 12814124 .. 12816401 (+)
RNA-Seq ExpressionMoc02g17070
SyntenyMoc02g17070
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGGAGTGTCAAGTGAAAAAAGGAAGGACACTTTGCGAGAGGCCAAGTACACCCCAGTCACGGAGGCCTACTTGATTCGGACAACCAAACAGTTACTTCCCATATCCTTTTCGAGAGGATGACGCGTGCAACCACCACCAACCTAACAATGATGTCCTGGTCATAACAACCATAATAGTTATACCCATGGTTCATCCAGTTCGGGTTGACGAAGGCATATCTATCATATTCTCTCACTTATCATTTTTAACGTGCTGTGGAGCACGACACGTTTGTGGGCTTTGCTAGTGAGAAGGTCACCTTAGAAGGAAGCATTAAACTATTACTGGTAGTCGAGGATGAGCCAAAACGAGCCATTATGGCTGACTTTCTTCTGGTTTACTCATTCGTGTACAACACCTTCCTCAAATGTCTTACTATCCACGTACTTGGAGCTGTCTTGTCCATCTATAATGAGATGATGAAATTCCTTGATGTGCAATGGACATGGTTTGTTAAGGACGAGCAATGTTCCTTCCGAGAGTGCCACACGTTGCTTTAAAGGAGTTCACATGAACTCTGTGGCCTGCCAATATAGAATTATTTTAGGAATGCTAGAGCCCTGCGAATGTGGCTATGCCTAAGTCTCTTTTATGTTGTAGTATCTCAAGGATGTGTAGTAACTTTCCTATGCTCAAAATTTAACCACGTTCATACAAATCTCAGGTGCAGTACTAAACTTGGAGCCTAACATAAAAAGGAAAAGAGACCCCAGCTGATAGGGGAGGAGGAAAAGGAAGGAATAATACGAAATGAGCTGAAACCCACAACATTCTGCACCCATTTCGAGGATGAAGCTGACGAGTAGGAGCTGGAATCTTCGCTATTATTGAGCTGGACGTTTTGCGCTGTTGTCGAAGCCTTTCCAACAAATGGGATATTCCTCCCTCTTACTCATTGTTTACTTCCTTTTCTTCATTAACTAAACCCCATTTTCGAGAGGAGTCTCTTGATGTAGCTTTCGAATAATGATGTTTTAGCATATCGTACTACTGATTTAATAGAGTTTCTTGAATGTTTCCTTCTTACTGAATGTGTTTGGCCATTATTTTTAGTTTGCTAGCTCTTTTGTGACTTTGGAAAGTCTATTTGATGCGTGATGAACTCTATTTGTGATAGACTCCTCTTAAAAAGGATGGTGAGTACTTAGAAATAAGGCTTACCCTATCACGCCTATAAACTGTTCTTCAAGTGTGTTTGTTTTATAGCAGGAGTTGAGAACCAAGTTGGTATAGGCAGTCGGCATTGCGATTTTGCTAGATCATTTTCTGGGAGTGAGTGAAAGCACTTGTAGTGATTCCCCCTAATTTCTCTCTATTTCTTAACGATTTCTATGTTAAGTGTGTTGTCTGTCATTTTCGTGTGCTCCAGCACCTGGTGATATAACATTTCCTTCTTTGAAGCCTATTTGTTATTTCAACCAATTTTAATGTGCAAAAATTTATATCGCATTAATTATTTTTAACTTTAAAGTCTTTCAATATTCTAATTATCTACCTTGAAGTTCAATCTTAGTCTTTGTAGATTCGACCTTATTTTATACGACAGTTGAGCATTATAATGTATATTTGAACTTTTTTTCACATCAGTTACGGACACGCAACAAGTTTTTGGCACCATTGTCAGGGACGAAACTACCTTACTTTGAGTTTAGTAATTTAGGATACGAAGCTTAAAGAGCTTTCTTAACTCTTTTTTCGGTGGTTTGTATAGTGAATGAACGATTTCCCTACATTGGAGTTTGAGTTTGACCTAGAGATAGAAAAAAAAAACTCTTAGAAGGAGAAAGGCCGAGCAAACAGTCCAGGGTAGAGAAAGATTACAAATGGCTAACCCACATAATCCAAAAGATCAGAGAGTTGAGCGCGTACTAAAGGATGCAGCTAGGAGACCTGTTTAGTACATCCTATAAATGTTGTTTTATTAGCCGATGATATGGAGCAGCAAATAAGAGAGTATGCAACCCCAACATTCTATGACTTCAACCTAGTAATTGCAGACGCCTGTATTGAAGACGATATATTTAAGCTGAAGTTAGTGATATTTCATATGCTCCAAATCGTAGGCCCATTTCATGGACTTTCATCTGAAGATCCACATCGCCATCTACAGTATTTTATGCAAGTGGCTAGTTCGTTCAAATTGGAAGGAGAGACTAAAGAAGCTATGAGCTCAAAATTGTTGCCATACTCCTTGAGGGATGGAGCAGGAGCATGGTTTGACCTGTTACAGTAG

mRNA sequence

ATGGGAGGAGTGTCAAGTGAAAAAAGGAAGGACACTTTGCGAGAGGCCAAGTACACCCCACACGACACGTTTGTGGGCTTTGCTAGTGAGAAGGTCACCTTAGAAGGAAGCATTAAACTATTACTGGTAGTCGAGGATGAGCCAAAACGAGCCATTATGGCTGACTTTCTTCTGGTTTACTCATTCGTGTACAACACCTTCCTCAAATGTCTTACTATCCACGTACTTGGAGCTGTCTTGTCCATCTATAATGAGATGATGAAATTCCTTGATGTGCAATGGACATGGTTTGTTAAGGACGAGCAATCCGATGATATGGAGCAGCAAATAAGAGAGTATGCAACCCCAACATTCTATGACTTCAACCTAGTAATTGCAGACGCCTGTATTGAAGACGATATATTTAAGCTGAAGTTAGTGATATTTCATATGCTCCAAATCGTAGGCCCATTTCATGGACTTTCATCTGAAGATCCACATCGCCATCTACAGTATTTTATGCAAGTGGCTAGTTCGTTCAAATTGGAAGGAGAGACTAAAGAAGCTATGAGCTCAAAATTGTTGCCATACTCCTTGAGGGATGGAGCAGGAGCATGGTTTGACCTGTTACAGTAG

Coding sequence (CDS)

ATGGGAGGAGTGTCAAGTGAAAAAAGGAAGGACACTTTGCGAGAGGCCAAGTACACCCCACACGACACGTTTGTGGGCTTTGCTAGTGAGAAGGTCACCTTAGAAGGAAGCATTAAACTATTACTGGTAGTCGAGGATGAGCCAAAACGAGCCATTATGGCTGACTTTCTTCTGGTTTACTCATTCGTGTACAACACCTTCCTCAAATGTCTTACTATCCACGTACTTGGAGCTGTCTTGTCCATCTATAATGAGATGATGAAATTCCTTGATGTGCAATGGACATGGTTTGTTAAGGACGAGCAATCCGATGATATGGAGCAGCAAATAAGAGAGTATGCAACCCCAACATTCTATGACTTCAACCTAGTAATTGCAGACGCCTGTATTGAAGACGATATATTTAAGCTGAAGTTAGTGATATTTCATATGCTCCAAATCGTAGGCCCATTTCATGGACTTTCATCTGAAGATCCACATCGCCATCTACAGTATTTTATGCAAGTGGCTAGTTCGTTCAAATTGGAAGGAGAGACTAAAGAAGCTATGAGCTCAAAATTGTTGCCATACTCCTTGAGGGATGGAGCAGGAGCATGGTTTGACCTGTTACAGTAG

Protein sequence

MGGVSSEKRKDTLREAKYTPHDTFVGFASEKVTLEGSIKLLLVVEDEPKRAIMADFLLVYSFVYNTFLKCLTIHVLGAVLSIYNEMMKFLDVQWTWFVKDEQSDDMEQQIREYATPTFYDFNLVIADACIEDDIFKLKLVIFHMLQIVGPFHGLSSEDPHRHLQYFMQVASSFKLEGETKEAMSSKLLPYSLRDGAGAWFDLLQ
Homology
BLAST of Moc02g17070 vs. NCBI nr
Match: XP_022155867.1 (uncharacterized protein LOC111022881 [Momordica charantia])

HSP 1 Score: 111.7 bits (278), Expect = 7.6e-21
Identity = 54/74 (72.97%), Postives = 58/74 (78.38%), Query Frame = 0

Query: 130 IEDDIFKLKLVIFHMLQIVGPFHGLSSEDPHRHLQYFMQVASSFKLEGETKEAMSSKLLP 189
           +E D FKLK  +F MLQ VGPFHGLSSEDPHRHLQYFMQVA SFKLEG +K A+   L P
Sbjct: 1   MEADRFKLKPAMFQMLQTVGPFHGLSSEDPHRHLQYFMQVADSFKLEGVSKRAIRLMLFP 60

Query: 190 YSLRDGAGAWFDLL 204
           YSLRD AGAW D L
Sbjct: 61  YSLRDSAGAWLDSL 74

BLAST of Moc02g17070 vs. NCBI nr
Match: XP_030483210.1 (uncharacterized protein LOC115699807 [Cannabis sativa])

HSP 1 Score: 102.8 bits (255), Expect = 3.5e-18
Identity = 52/101 (51.49%), Postives = 68/101 (67.33%), Query Frame = 0

Query: 103 SDDMEQQIREYATPTFYDFNLVIADACIEDDIFKLKLVIFHMLQIVGPFHGLSSEDPHRH 162
           +DD +Q IR+YA P F + N  I    I+   F+LK V+F MLQ VG F G+ +EDPH H
Sbjct: 2   ADDRDQIIRQYAAPLFNELNPGIVRPEIQAPQFELKPVMFQMLQTVGQFSGIPTEDPHLH 61

Query: 163 LQYFMQVASSFKLEGETKEAMSSKLLPYSLRDGAGAWFDLL 204
           L+ FM+V+ SFKL G T++A+  KL PYSLRD A AW + L
Sbjct: 62  LRLFMEVSDSFKLPGVTEDALRLKLFPYSLRDQARAWLNSL 102

BLAST of Moc02g17070 vs. NCBI nr
Match: XP_030478162.1 (uncharacterized protein LOC115695219 [Cannabis sativa])

HSP 1 Score: 100.9 bits (250), Expect = 1.3e-17
Identity = 50/101 (49.50%), Postives = 67/101 (66.34%), Query Frame = 0

Query: 103 SDDMEQQIREYATPTFYDFNLVIADACIEDDIFKLKLVIFHMLQIVGPFHGLSSEDPHRH 162
           +DD  Q IREYA P F + NL I    I+   F+LK ++F MLQ VG F G  +EDPH H
Sbjct: 20  ADDRAQAIREYAAPMFNELNLGIVRPKIQAPHFELKPIMFQMLQTVGQFGGSPTEDPHLH 79

Query: 163 LQYFMQVASSFKLEGETKEAMSSKLLPYSLRDGAGAWFDLL 204
           +  F++V+ SFKL+G ++EA+  KL P+SLRD A AW + L
Sbjct: 80  IHPFLEVSDSFKLQGVSEEALRLKLFPFSLRDRARAWLNTL 120

BLAST of Moc02g17070 vs. NCBI nr
Match: XP_022158768.1 (uncharacterized protein LOC111025234 [Momordica charantia])

HSP 1 Score: 100.1 bits (248), Expect = 2.3e-17
Identity = 58/101 (57.43%), Postives = 72/101 (71.29%), Query Frame = 0

Query: 104 DDMEQQIREYATPTFYDFNLVIADACIEDDIFKLKLVIFHMLQIVGPFHGLSSEDPHRHL 163
           DD+EQ+IR YA P F+DFN VI D  IE D F+LK  +F MLQI   FHGL+SEDP+RHL
Sbjct: 39  DDIEQEIRAYAAPAFFDFNPVIVDPIIEADRFELKPAMFQMLQI---FHGLASEDPYRHL 98

Query: 164 QYFMQVASSFKLEGETKEAMSSKLLPYSLRDGAGAWFDLLQ 205
           QYFMQVA+S K+E    +A S+K L   L+  A A FD+L+
Sbjct: 99  QYFMQVANSSKVEEFVIDASSNKAL--LLKHYAEA-FDILE 133

BLAST of Moc02g17070 vs. NCBI nr
Match: XP_024023166.1 (uncharacterized protein LOC112092119 [Morus notabilis])

HSP 1 Score: 99.4 bits (246), Expect = 3.9e-17
Identity = 56/129 (43.41%), Postives = 76/129 (58.91%), Query Frame = 0

Query: 75  VLGAVLSIYNEMMKFLDVQWTWFVKDEQSDDMEQQIREYATPTFYDFNLVIADACIEDDI 134
           V G +L++  +++    VQ  + V     DD  + IR++A P     N VI    IE   
Sbjct: 6   VQGNLLNLGQQLIVLEPVQRPFLV-----DDHHRAIRDFAVPVLDGLNPVIVQPNIEAQY 65

Query: 135 FKLKLVIFHMLQIVGPFHGLSSEDPHRHLQYFMQVASSFKLEGETKEAMSSKLLPYSLRD 194
           F+LKLVIF MLQ VG F G++++DPH HL+ FM+V+  FKL G   E +   L PYSLRD
Sbjct: 66  FELKLVIFQMLQTVGQFSGMAADDPHLHLRLFMEVSDIFKLPGVPLETLRLTLFPYSLRD 125

Query: 195 GAGAWFDLL 204
            A AWF+ L
Sbjct: 126 RARAWFNSL 129

BLAST of Moc02g17070 vs. ExPASy TrEMBL
Match: A0A6J1DQJ0 (uncharacterized protein LOC111022881 OS=Momordica charantia OX=3673 GN=LOC111022881 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.7e-21
Identity = 54/74 (72.97%), Postives = 58/74 (78.38%), Query Frame = 0

Query: 130 IEDDIFKLKLVIFHMLQIVGPFHGLSSEDPHRHLQYFMQVASSFKLEGETKEAMSSKLLP 189
           +E D FKLK  +F MLQ VGPFHGLSSEDPHRHLQYFMQVA SFKLEG +K A+   L P
Sbjct: 1   MEADRFKLKPAMFQMLQTVGPFHGLSSEDPHRHLQYFMQVADSFKLEGVSKRAIRLMLFP 60

Query: 190 YSLRDGAGAWFDLL 204
           YSLRD AGAW D L
Sbjct: 61  YSLRDSAGAWLDSL 74

BLAST of Moc02g17070 vs. ExPASy TrEMBL
Match: A0A6J1DX14 (uncharacterized protein LOC111025234 OS=Momordica charantia OX=3673 GN=LOC111025234 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.1e-17
Identity = 58/101 (57.43%), Postives = 72/101 (71.29%), Query Frame = 0

Query: 104 DDMEQQIREYATPTFYDFNLVIADACIEDDIFKLKLVIFHMLQIVGPFHGLSSEDPHRHL 163
           DD+EQ+IR YA P F+DFN VI D  IE D F+LK  +F MLQI   FHGL+SEDP+RHL
Sbjct: 39  DDIEQEIRAYAAPAFFDFNPVIVDPIIEADRFELKPAMFQMLQI---FHGLASEDPYRHL 98

Query: 164 QYFMQVASSFKLEGETKEAMSSKLLPYSLRDGAGAWFDLLQ 205
           QYFMQVA+S K+E    +A S+K L   L+  A A FD+L+
Sbjct: 99  QYFMQVANSSKVEEFVIDASSNKAL--LLKHYAEA-FDILE 133

BLAST of Moc02g17070 vs. ExPASy TrEMBL
Match: U5CUK7 (Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s03373p00007640 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 5.5e-17
Identity = 49/101 (48.51%), Postives = 67/101 (66.34%), Query Frame = 0

Query: 103 SDDMEQQIREYATPTFYDFNLVIADACIEDDIFKLKLVIFHMLQIVGPFHGLSSEDPHRH 162
           +DD  + IREYA P F + N  I    I+   F+LK V+F MLQ VG F G  +EDPH H
Sbjct: 18  ADDRARAIREYAAPMFNELNSGIVRPEIQAPHFELKPVMFQMLQTVGQFGGSPTEDPHLH 77

Query: 163 LQYFMQVASSFKLEGETKEAMSSKLLPYSLRDGAGAWFDLL 204
           ++ F++V+ SFKL+G ++EA+  KL P+SLRD A AW + L
Sbjct: 78  IRSFLEVSDSFKLQGVSEEALRLKLFPFSLRDRARAWLNTL 118

BLAST of Moc02g17070 vs. ExPASy TrEMBL
Match: U5CUI2 (Retrotrans_gag domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMTR_s04947p00003620 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.2e-16
Identity = 47/101 (46.53%), Postives = 67/101 (66.34%), Query Frame = 0

Query: 103 SDDMEQQIREYATPTFYDFNLVIADACIEDDIFKLKLVIFHMLQIVGPFHGLSSEDPHRH 162
           +DD  + IREYA P F + N  I    I+   F+LK V+F MLQ VG F G+ +EDPH H
Sbjct: 16  ADDRARAIREYAAPMFNELNPGIVRPEIQAPQFELKPVMFQMLQTVGQFSGMPTEDPHLH 75

Query: 163 LQYFMQVASSFKLEGETKEAMSSKLLPYSLRDGAGAWFDLL 204
           L+ F++V+ SFK++G ++E +  KL P+SLRD A +W + L
Sbjct: 76  LRSFLEVSDSFKIQGVSEEVLRLKLFPFSLRDRARSWLNTL 116

BLAST of Moc02g17070 vs. ExPASy TrEMBL
Match: A0A6J1H7E4 (uncharacterized protein LOC111461168 OS=Cucurbita moschata OX=3662 GN=LOC111461168 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.2e-16
Identity = 47/101 (46.53%), Postives = 64/101 (63.37%), Query Frame = 0

Query: 103 SDDMEQQIREYATPTFYDFNLVIADACIEDDIFKLKLVIFHMLQIVGPFHGLSSEDPHRH 162
           +DD E+ IR YA P   + N  I    ++   F+LK V+F MLQ +G FHGL SEDPH H
Sbjct: 36  ADDRERAIRAYAHPAVDELNPCIIRPEMQATTFELKPVMFQMLQTIGQFHGLPSEDPHLH 95

Query: 163 LQYFMQVASSFKLEGETKEAMSSKLLPYSLRDGAGAWFDLL 204
           L+ F+ V+ SF+ +G  K+ +   L PYSLRDGA +W + L
Sbjct: 96  LKSFLGVSDSFRFQGVDKDVIRLSLFPYSLRDGAKSWLNTL 136

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022155867.17.6e-2172.97uncharacterized protein LOC111022881 [Momordica charantia][more]
XP_030483210.13.5e-1851.49uncharacterized protein LOC115699807 [Cannabis sativa][more]
XP_030478162.11.3e-1749.50uncharacterized protein LOC115695219 [Cannabis sativa][more]
XP_022158768.12.3e-1757.43uncharacterized protein LOC111025234 [Momordica charantia][more]
XP_024023166.13.9e-1743.41uncharacterized protein LOC112092119 [Morus notabilis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DQJ03.7e-2172.97uncharacterized protein LOC111022881 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J1DX141.1e-1757.43uncharacterized protein LOC111025234 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
U5CUK75.5e-1748.51Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s03373p00007640... [more]
U5CUI21.2e-1646.53Retrotrans_gag domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMT... [more]
A0A6J1H7E41.2e-1646.53uncharacterized protein LOC111461168 OS=Cucurbita moschata OX=3662 GN=LOC1114611... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc02g17070.1Moc02g17070.1mRNA