Moc02g17060 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc02g17060
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrotran_gag_3 domain-containing protein
Location	chr2: 12808384 .. 12810751 (+)
RNA-Seq Expression	Moc02g17060
Synteny	Moc02g17060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCGGAAAGGCAAGTTCGAGGCATGCAAGAGATTGGCAGCGGAGCTTCTCGACACAACGTGACCTCAACGGGGGCAGTATTGATCAATCGGTCAAGAAGGAGCATTTCCCGAGCAGGTTTCAAGTCGAAGTGGAGAACTTGGCATTACTCAAACGCCCTGGCCGTAAGAGACAGCCCCCACACAAGTGCGACCGGATTCGGTACCTTTGCTTCCACAAGAATCATAGCCACAACACCACGGATTGCAACAACTTAAAGCAACAAGTCCAATCCCTTAGGTAAAGACAGGAGCGAACCAAGGAAAAAAGATTGACAAGAGAGACCAGCACTCATCCCGCCAAAAGATATATAGAAGTCTCATAAGAAGGAAGTGATAACTAATAATGTTAGTTGTAATTCTGTTGTATTTTAGTTATCAAATTAGTTATTGTTGTTAAAAGTCTTGTGTTCACTTGCCTAAATAAAGGTTTTGTATACTCTAATTATTAACGTGAAGCATACTCTTTTATAGGGGCGTACATGGGTAGGGTTGGGTTGAAGTGGTTTTTTGAACCAACCCGAAGGTTTAGTGACCCAATAAAACCGAGTGTATAGGGCAACCCAACCCAACCCAACCCTTAAATCTTCGGGTTGGATCAGGTTGGTCCCTAATTGCTTCTTTTTTTTTCGTGTTTTTCGGAGTTACGAATCATTTTTAAAATTTACCATCTAATTTCCAGATGAACTACTAGACAATCCTTACACACAAGAAGGCAGAAAAAAAATCCCCAAATTGAAAATTTTCTAATGAAAGAGAAATACGAAAATGATCCAAGAATGAGAGGTGTTGGGCAACATCTGAAACAAAAAAAATGTGAGTTTGGGTTCAATTGCTTCTTTTTTTAACTATATTGCAAAAAAAAAAAAAATCACTCAAGAATGGGAGGTGTTGGGCAAGAATGGGAGGAACGGTGGTGGATAGCATGCGACGACGATGGAAGAACATCGACGATAGTAGATGGGACAACCGCGATGGGAGACGGACAGCAGCGATGGGAAACGAACAGGAACGACAAATGGCGGAAATAAATCATAAGCGTGAGAGATAGTGAGATCGAGATTGAGAGACAAGATTGGGAGAGGCTGGGAGGGGTGAGAATGAGATCGAGATTTGAGAAGAGGAAGAGAGACTAGAGAGTGATTGAAAACCTAGAGATGGAGGTCGTGAGATCGAGATTGAGAGGTGGAGTTGAAGAGGCGGCTGCAGTAAGAGAAAGTATAAAAAAACCCTAAATAGAAGACCTAACATATACATATATATATTATCGGTTCGGTTCGAGTTGAACAGACTATTTTGTTATTAAAACCAAGAATCGAACCGAACTGGTCGGTTCTTAAAATTACTGGTCGGTTCATAAAATTTTTAACCCACCCCAAACCGAAAATTTATCTAACCTAACCCAACCCTTACAGTTTGGGTTGGGTTACTCGAGTTCTTCGGGTTATCGGGTTTTTTGAACACCCCTACTCTATTATTCTAAATAGAGTTTATTACATGGTATCAAACAGTTTTGACTCACGTCTTTGATCCTCCACGTGTTCGCTCTACTTATCCTTCTTCAACTAGTGCTTCAATTTGTGCTTCTTCAATGGCGGATTCTCTTCCCTCAAAGGATCTTGCTTCACCAATTTTTCTACTCTCAAATATTTGCAATCTCGTATCCATCCGTCTTGATTCTTCAAATTTCGTACTTTGGAAGTTTCAATTGACTTCCATTCTCAAAGCTCACAATCTATTTCGTTTTTCGACAGATATGTAGTTAAGCCCTATGCAATTTTGGCGTCTTCTTCGCCAACAGTTGGATCTGCAGTCGTCCAATCCAATCCAGCCGATGAAGATTGGATCGCCAAGGATCATGCTTTCATGACCTTGATTAATGCTACTCTATCACCAACCGCTCTTTCTTATGTTGTTGGCTGTGAATCCTTAAAGGAAATTTGGGACATACTTGTCAAACATTATTCTTCGAATTCAAGGACGAATATTGTGACGCTTAAAACTTATTTGGAATCAATTGCTAAGAAGCCTACTGAATCAATCCATCAGTATATTAAATGTAAAAAATTCAAGGACAAGTTGGCTAACATATCTGTCACAATTGATGATGAAGATCTGGTTATCTACACATTAAATGGTTTGCCTGCTGAGTACAACACTTTTCGGACTTCTATGCACACCCGCGCTTCTCCGATTCAGTTTGAAGAACTTTATGTTCTTTTTGTTGCGAGGAATTTGTCATTGATAAACAAGCTAGGAGCGATGAATCCTTCTCTTCACCTACTTCACTTCTTACCTCACGAAATTATTCTTGGAATCAAAATGTAA

mRNA sequence

ATGGGCGGAAAGGCAAGTTCGAGGCATGCAAGAGATTGGCAGCGGAGCTTCTCGACACAACGTGACCTCAACGGGGGCAGTATTGATCAATCGGTCAAGAAGGAGCATTTCCCGAGCAGGTTTCAAGTCGAAGTGGAGAACTTGGCATTACTCAAACGCCCTGGCCGTAAGAGACAGCCCCCACACAAGTGCGACCGGATTCGGTACCTTTGCTTCCACAAGAATCATAGCCACAACACCACGGATTGCAACAACTTAAAGCAACAAGTCCAATCCCTTAGATATGTAGTTAAGCCCTATGCAATTTTGGCGTCTTCTTCGCCAACAGTTGGATCTGCAGTCGTCCAATCCAATCCAGCCGATGAAGATTGGATCGCCAAGGATCATGCTTTCATGACCTTGATTAATGCTACTCTATCACCAACCGCTCTTTCTTATGTTGTTGGCTGTGAATCCTTAAAGGAAATTTGGGACATACTTGTCAAACATTATTCTTCGAATTCAAGGACGAATATTGTGACGCTTAAAACTTATTTGGAATCAATTGCTAAGAAGCCTACTGAATCAATCCATCAGTATATTAAATGTAAAAAATTCAAGGACAAGTTGGCTAACATATCTGTCACAATTGATGATGAAGATCTGGTTATCTACACATTAAATGGTTTGCCTGCTGAGTACAACACTTTTCGGACTTCTATGCACACCCGCGCTTCTCCGATTCAGTTTGAAGAACTTTATGTTCTTTTTGTTGCGAGGAATTTGTCATTGATAAACAAGCTAGGAGCGATGAATCCTTCTCTTCACCTACTTCACTTCTTACCTCACGAAATTATTCTTGGAATCAAAATGTAA

Coding sequence (CDS)

ATGGGCGGAAAGGCAAGTTCGAGGCATGCAAGAGATTGGCAGCGGAGCTTCTCGACACAACGTGACCTCAACGGGGGCAGTATTGATCAATCGGTCAAGAAGGAGCATTTCCCGAGCAGGTTTCAAGTCGAAGTGGAGAACTTGGCATTACTCAAACGCCCTGGCCGTAAGAGACAGCCCCCACACAAGTGCGACCGGATTCGGTACCTTTGCTTCCACAAGAATCATAGCCACAACACCACGGATTGCAACAACTTAAAGCAACAAGTCCAATCCCTTAGATATGTAGTTAAGCCCTATGCAATTTTGGCGTCTTCTTCGCCAACAGTTGGATCTGCAGTCGTCCAATCCAATCCAGCCGATGAAGATTGGATCGCCAAGGATCATGCTTTCATGACCTTGATTAATGCTACTCTATCACCAACCGCTCTTTCTTATGTTGTTGGCTGTGAATCCTTAAAGGAAATTTGGGACATACTTGTCAAACATTATTCTTCGAATTCAAGGACGAATATTGTGACGCTTAAAACTTATTTGGAATCAATTGCTAAGAAGCCTACTGAATCAATCCATCAGTATATTAAATGTAAAAAATTCAAGGACAAGTTGGCTAACATATCTGTCACAATTGATGATGAAGATCTGGTTATCTACACATTAAATGGTTTGCCTGCTGAGTACAACACTTTTCGGACTTCTATGCACACCCGCGCTTCTCCGATTCAGTTTGAAGAACTTTATGTTCTTTTTGTTGCGAGGAATTTGTCATTGATAAACAAGCTAGGAGCGATGAATCCTTCTCTTCACCTACTTCACTTCTTACCTCACGAAATTATTCTTGGAATCAAAATGTAA

Protein sequence

MGGKASSRHARDWQRSFSTQRDLNGGSIDQSVKKEHFPSRFQVEVENLALLKRPGRKRQPPHKCDRIRYLCFHKNHSHNTTDCNNLKQQVQSLRYVVKPYAILASSSPTVGSAVVQSNPADEDWIAKDHAFMTLINATLSPTALSYVVGCESLKEIWDILVKHYSSNSRTNIVTLKTYLESIAKKPTESIHQYIKCKKFKDKLANISVTIDDEDLVIYTLNGLPAEYNTFRTSMHTRASPIQFEELYVLFVARNLSLINKLGAMNPSLHLLHFLPHEIILGIKM

Homology

[Close]

BLAST of Moc02g17060 vs. NCBI nr
Match: XP_022159298.1 (uncharacterized protein LOC111025709 [Momordica charantia])

HSP 1 Score: 190.3 bits (482), Expect = 2.3e-44
Identity = 95/155 (61.29%), Postives = 121/155 (78.06%), Query Frame = 0


Query: 98  KPYAILASSSPTVGSAVVQSNPADEDWIAKDHAFMTLINATLSPTALSYVVGCESLKEIW 157
           KP   L SSS ++ S     NPA  DWIAKDHA MTL+NATLSP+AL+Y+VGC+S +++W
Sbjct: 25  KPAKFLVSSSDSLSSTSPIVNPAFSDWIAKDHALMTLLNATLSPSALAYMVGCDSSQQVW 84

Query: 158 DILVKHYSSNSRTNIVTLKTYLESIAKKPTESIHQYI-KCKKFKDKLANISVTIDDEDLV 217
             LVK+YSS+SRTN+V LK+ L+SI+KKP ESI  Y+ + K+ KDKLAN+SV +D+EDL+
Sbjct: 85  QTLVKYYSSSSRTNVVNLKSNLQSISKKPGESIDLYMQRIKELKDKLANVSVLVDNEDLL 144

Query: 218 IYTLNGLPAEYNTFRTSMHTRASPIQFEELYVLFV 252
           IYTLNGLP E+N F TSM TR+  + FEELYVL V
Sbjct: 145 IYTLNGLPPEFNAFCTSMCTRSQSVSFEELYVLLV 179

[Close]

BLAST of Moc02g17060 vs. NCBI nr
Match: XP_008448007.1 (PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo])

HSP 1 Score: 183.0 bits (463), Expect = 3.7e-42
Identity = 93/154 (60.39%), Postives = 117/154 (75.97%), Query Frame = 0


Query: 105 SSSPTVGSAVVQSNPADEDWIAKDHAFMTLINATLSPTALSYVVGCESLKEIWDILVKHY 164
           ++S +  +   QSNP+ EDWIAKD A MT+INATLSP AL+YVVG  S K++WD+L K Y
Sbjct: 70  NNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQVWDVLAKLY 129

Query: 165 SSNSRTNIVTLKTYLESIAKKPTESIHQYIK-CKKFKDKLANISVTIDDEDLVIYTLNGL 224
           SS SR+N+V LK+ L++I KKP ESI  YIK  K+ KDKLAN+S  I++EDL+IY LNGL
Sbjct: 130 SSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEEDLLIYALNGL 189

Query: 225 PAEYNTFRTSMHTRASPIQFEELYVLFVARNLSL 258
           P EYNTFRTSM TR+ P+ FEEL+VL  A   +L
Sbjct: 190 PNEYNTFRTSMRTRSQPVTFEELHVLLRAEESAL 223

[Close]

BLAST of Moc02g17060 vs. NCBI nr
Match: XP_008448008.1 (PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo])

HSP 1 Score: 183.0 bits (463), Expect = 3.7e-42
Identity = 93/154 (60.39%), Postives = 117/154 (75.97%), Query Frame = 0


Query: 105 SSSPTVGSAVVQSNPADEDWIAKDHAFMTLINATLSPTALSYVVGCESLKEIWDILVKHY 164
           ++S +  +   QSNP+ EDWIAKD A MT+INATLSP AL+YVVG  S K++WD+L K Y
Sbjct: 70  NNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQVWDVLAKLY 129

Query: 165 SSNSRTNIVTLKTYLESIAKKPTESIHQYIK-CKKFKDKLANISVTIDDEDLVIYTLNGL 224
           SS SR+N+V LK+ L++I KKP ESI  YIK  K+ KDKLAN+S  I++EDL+IY LNGL
Sbjct: 130 SSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEEDLLIYALNGL 189

Query: 225 PAEYNTFRTSMHTRASPIQFEELYVLFVARNLSL 258
           P EYNTFRTSM TR+ P+ FEEL+VL  A   +L
Sbjct: 190 PNEYNTFRTSMRTRSQPVTFEELHVLLRAEESAL 223

[Close]

BLAST of Moc02g17060 vs. NCBI nr
Match: KAA0049700.1 (T4.5 [Cucumis melo var. makuwa] >TYK12172.1 T4.5 [Cucumis melo var. makuwa])

HSP 1 Score: 183.0 bits (463), Expect = 3.7e-42
Identity = 93/154 (60.39%), Postives = 117/154 (75.97%), Query Frame = 0


Query: 105 SSSPTVGSAVVQSNPADEDWIAKDHAFMTLINATLSPTALSYVVGCESLKEIWDILVKHY 164
           ++S +  +   QSNP+ EDWIAKD A MT+INATLSP AL+YVVG  S K++WD+L K Y
Sbjct: 70  NNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQVWDVLAKLY 129

Query: 165 SSNSRTNIVTLKTYLESIAKKPTESIHQYIK-CKKFKDKLANISVTIDDEDLVIYTLNGL 224
           SS SR+N+V LK+ L++I KKP ESI  YIK  K+ KDKLAN+S  I++EDL+IY LNGL
Sbjct: 130 SSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEEDLLIYALNGL 189

Query: 225 PAEYNTFRTSMHTRASPIQFEELYVLFVARNLSL 258
           P EYNTFRTSM TR+ P+ FEEL+VL  A   +L
Sbjct: 190 PNEYNTFRTSMRTRSQPVTFEELHVLLRAEESAL 223

[Close]

BLAST of Moc02g17060 vs. NCBI nr
Match: XP_016900446.1 (PREDICTED: uncharacterized protein LOC103490319 isoform X1 [Cucumis melo])

HSP 1 Score: 183.0 bits (463), Expect = 3.7e-42
Identity = 93/154 (60.39%), Postives = 117/154 (75.97%), Query Frame = 0


Query: 105 SSSPTVGSAVVQSNPADEDWIAKDHAFMTLINATLSPTALSYVVGCESLKEIWDILVKHY 164
           ++S +  +   QSNP+ EDWIAKD A MT+INATLSP AL+YVVG  S K++WD+L K Y
Sbjct: 70  NNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQVWDVLAKLY 129

Query: 165 SSNSRTNIVTLKTYLESIAKKPTESIHQYIK-CKKFKDKLANISVTIDDEDLVIYTLNGL 224
           SS SR+N+V LK+ L++I KKP ESI  YIK  K+ KDKLAN+S  I++EDL+IY LNGL
Sbjct: 130 SSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEEDLLIYALNGL 189

Query: 225 PAEYNTFRTSMHTRASPIQFEELYVLFVARNLSL 258
           P EYNTFRTSM TR+ P+ FEEL+VL  A   +L
Sbjct: 190 PNEYNTFRTSMRTRSQPVTFEELHVLLRAEESAL 223

[Close]

BLAST of Moc02g17060 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 2.2e-05
Identity = 33/126 (26.19%), Postives = 60/126 (47.62%), Query Frame = 0


Query: 122 EDWIAKDHAFMTLINATLSPTALSYVVGCESLKEIWDILVKHYSSNSRTNIVTLKTYLES 181
           EDW   D    + I   LS   ++ ++  ++ + IW  L   Y S + TN + LK  L +
Sbjct: 50  EDWADLDERAASAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYA 109

Query: 182 I-AKKPTESIHQYIKCKKFKDKLANISVTIDDEDLVIYTLNGLPAEYNTFRTSMHTRASP 241
           +   + T  +           +LAN+ V I++ED  I  LN LP+ Y+   T++    + 
Sbjct: 110 LHMSEGTNFLSHLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKTT 169

Query: 242 IQFEEL 247
           I+ +++
Sbjct: 170 IELKDV 175

[Close]

BLAST of Moc02g17060 vs. ExPASy TrEMBL
Match: A0A6J1DYF1 (uncharacterized protein LOC111025709 OS=Momordica charantia OX=3673 GN=LOC111025709 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 1.1e-44
Identity = 95/155 (61.29%), Postives = 121/155 (78.06%), Query Frame = 0


Query: 98  KPYAILASSSPTVGSAVVQSNPADEDWIAKDHAFMTLINATLSPTALSYVVGCESLKEIW 157
           KP   L SSS ++ S     NPA  DWIAKDHA MTL+NATLSP+AL+Y+VGC+S +++W
Sbjct: 25  KPAKFLVSSSDSLSSTSPIVNPAFSDWIAKDHALMTLLNATLSPSALAYMVGCDSSQQVW 84

Query: 158 DILVKHYSSNSRTNIVTLKTYLESIAKKPTESIHQYI-KCKKFKDKLANISVTIDDEDLV 217
             LVK+YSS+SRTN+V LK+ L+SI+KKP ESI  Y+ + K+ KDKLAN+SV +D+EDL+
Sbjct: 85  QTLVKYYSSSSRTNVVNLKSNLQSISKKPGESIDLYMQRIKELKDKLANVSVLVDNEDLL 144

Query: 218 IYTLNGLPAEYNTFRTSMHTRASPIQFEELYVLFV 252
           IYTLNGLP E+N F TSM TR+  + FEELYVL V
Sbjct: 145 IYTLNGLPPEFNAFCTSMCTRSQSVSFEELYVLLV 179

[Close]

BLAST of Moc02g17060 vs. ExPASy TrEMBL
Match: A0A5D3CLI6 (T4.5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001120 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 1.8e-42
Identity = 93/154 (60.39%), Postives = 117/154 (75.97%), Query Frame = 0


Query: 105 SSSPTVGSAVVQSNPADEDWIAKDHAFMTLINATLSPTALSYVVGCESLKEIWDILVKHY 164
           ++S +  +   QSNP+ EDWIAKD A MT+INATLSP AL+YVVG  S K++WD+L K Y
Sbjct: 70  NNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQVWDVLAKLY 129

Query: 165 SSNSRTNIVTLKTYLESIAKKPTESIHQYIK-CKKFKDKLANISVTIDDEDLVIYTLNGL 224
           SS SR+N+V LK+ L++I KKP ESI  YIK  K+ KDKLAN+S  I++EDL+IY LNGL
Sbjct: 130 SSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEEDLLIYALNGL 189

Query: 225 PAEYNTFRTSMHTRASPIQFEELYVLFVARNLSL 258
           P EYNTFRTSM TR+ P+ FEEL+VL  A   +L
Sbjct: 190 PNEYNTFRTSMRTRSQPVTFEELHVLLRAEESAL 223

[Close]

BLAST of Moc02g17060 vs. ExPASy TrEMBL
Match: A0A1S3BI58 (uncharacterized protein LOC103490319 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490319 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 1.8e-42
Identity = 93/154 (60.39%), Postives = 117/154 (75.97%), Query Frame = 0


Query: 105 SSSPTVGSAVVQSNPADEDWIAKDHAFMTLINATLSPTALSYVVGCESLKEIWDILVKHY 164
           ++S +  +   QSNP+ EDWIAKD A MT+INATLSP AL+YVVG  S K++WD+L K Y
Sbjct: 70  NNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQVWDVLAKLY 129

Query: 165 SSNSRTNIVTLKTYLESIAKKPTESIHQYIK-CKKFKDKLANISVTIDDEDLVIYTLNGL 224
           SS SR+N+V LK+ L++I KKP ESI  YIK  K+ KDKLAN+S  I++EDL+IY LNGL
Sbjct: 130 SSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEEDLLIYALNGL 189

Query: 225 PAEYNTFRTSMHTRASPIQFEELYVLFVARNLSL 258
           P EYNTFRTSM TR+ P+ FEEL+VL  A   +L
Sbjct: 190 PNEYNTFRTSMRTRSQPVTFEELHVLLRAEESAL 223

[Close]

BLAST of Moc02g17060 vs. ExPASy TrEMBL
Match: A0A1S4DWT9 (uncharacterized protein LOC103490319 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490319 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 1.8e-42
Identity = 93/154 (60.39%), Postives = 117/154 (75.97%), Query Frame = 0


Query: 105 SSSPTVGSAVVQSNPADEDWIAKDHAFMTLINATLSPTALSYVVGCESLKEIWDILVKHY 164
           ++S +  +   QSNP+ EDWIAKD A MT+INATLSP AL+YVVG  S K++WD+L K Y
Sbjct: 70  NNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQVWDVLAKLY 129

Query: 165 SSNSRTNIVTLKTYLESIAKKPTESIHQYIK-CKKFKDKLANISVTIDDEDLVIYTLNGL 224
           SS SR+N+V LK+ L++I KKP ESI  YIK  K+ KDKLAN+S  I++EDL+IY LNGL
Sbjct: 130 SSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEEDLLIYALNGL 189

Query: 225 PAEYNTFRTSMHTRASPIQFEELYVLFVARNLSL 258
           P EYNTFRTSM TR+ P+ FEEL+VL  A   +L
Sbjct: 190 PNEYNTFRTSMRTRSQPVTFEELHVLLRAEESAL 223

[Close]

BLAST of Moc02g17060 vs. ExPASy TrEMBL
Match: A0A1S3BIR3 (uncharacterized protein LOC103490319 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103490319 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 1.8e-42
Identity = 93/154 (60.39%), Postives = 117/154 (75.97%), Query Frame = 0


Query: 105 SSSPTVGSAVVQSNPADEDWIAKDHAFMTLINATLSPTALSYVVGCESLKEIWDILVKHY 164
           ++S +  +   QSNP+ EDWIAKD A MT+INATLSP AL+YVVG  S K++WD+L K Y
Sbjct: 70  NNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQVWDVLAKLY 129

Query: 165 SSNSRTNIVTLKTYLESIAKKPTESIHQYIK-CKKFKDKLANISVTIDDEDLVIYTLNGL 224
           SS SR+N+V LK+ L++I KKP ESI  YIK  K+ KDKLAN+S  I++EDL+IY LNGL
Sbjct: 130 SSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEEDLLIYALNGL 189

Query: 225 PAEYNTFRTSMHTRASPIQFEELYVLFVARNLSL 258
           P EYNTFRTSM TR+ P+ FEEL+VL  A   +L
Sbjct: 190 PNEYNTFRTSMRTRSQPVTFEELHVLLRAEESAL 223

[Close]

BLAST of Moc02g17060 vs. TAIR 10
Match: AT1G34070.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 49.3 bits (116), Expect = 6.0e-06
Identity = 34/134 (25.37%), Postives = 58/134 (43.28%), Query Frame = 0


Query: 110 VGSAVVQSNPADEDWIAKDHAFMTLINATLSPTAL--SYVVGCESLKEIWDILVKHYSSN 169
           +   ++ +N  D +W  +D      +  TL+P     S+V    S ++IW  +   + +N
Sbjct: 51  IDGTLLPTNANDVNWQKRDGIVKLSLYGTLTPKQFQGSFVTSSTS-RDIWLRIKNQFRNN 110

Query: 170 SRTNIVTLKTYLESIAKKPTESIHQYIKCKKFKDKLANISVTIDDEDLVIYTLNGLPAEY 229
                + L + L +           Y K KK  D L N+ V + D +LV+Y LNGL  ++
Sbjct: 111 KDARALRLDSELRTKDIGDMRVADYYRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKF 170

Query: 230 -NTFRTSMHTRASP 241
            N      H +  P
Sbjct: 171 DNIINVIKHRQPFP 183

The following BLAST results are available for this feature:

BLAST of Moc02g17060 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159298.1	2.3e-44	61.29	uncharacterized protein LOC111025709 [Momordica charantia]	[more]
XP_008448007.1	3.7e-42	60.39	PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo]	[more]
XP_008448008.1	3.7e-42	60.39	PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo]	[more]
KAA0049700.1	3.7e-42	60.39	T4.5 [Cucumis melo var. makuwa] >TYK12172.1 T4.5 [Cucumis melo var. makuwa]	[more]
XP_016900446.1	3.7e-42	60.39	PREDICTED: uncharacterized protein LOC103490319 isoform X1 [Cucumis melo]	[more]

BLAST of Moc02g17060 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	2.2e-05	26.19	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of Moc02g17060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DYF1	1.1e-44	61.29	uncharacterized protein LOC111025709 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A5D3CLI6	1.8e-42	60.39	T4.5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001120 PE=4 SV=...	[more]
A0A1S3BI58	1.8e-42	60.39	uncharacterized protein LOC103490319 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S4DWT9	1.8e-42	60.39	uncharacterized protein LOC103490319 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3BIR3	1.8e-42	60.39	uncharacterized protein LOC103490319 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Moc02g17060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G34070.1	6.0e-06	25.37	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 124..247 e-value: 1.0E-22 score: 80.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35
None	No IPR available	PANTHER	PTHR47481	FAMILY NOT NAMED	coord: 119..246

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc02g17060.1	Moc02g17060.1	mRNA