Moc02g16760 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc02g16760
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionTy1-copia retrotransposon protein
Locationchr2: 12594508 .. 12598870 (+)
RNA-Seq ExpressionMoc02g16760
SyntenyMoc02g16760
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTACAATCGGATCCGGGAAGGCTCTAGCAGACTTGTCAAAATTGGAACCTCTCGATGGATCCAATTATCGCCGCTGGTCCCAGAAGCTACTTATTTTCTTTGAGCAGTTGGAGATCGACTATATCCTTACTACTGCTCAGCCCCCGTCGTCGCCACAACCACCACTGCTGACCAGTCTGCCGCCACGGCTTCAGCTACGACTGCTGATCCCGGAACGTCCACTGTTGCTGTCGGTGGTACTGATAAATTTGAGAAAGACAACAAGACTGTTTGTGGGCATCTACTCAACCATGTGAAGGATTCTCTCTTCGATCTGTTCGTAGTCCAAAAATCTGCAAAGATTATTTGGGACAGTTTAGAATCTAGATATGGTGGGGATGATGCAGGCAGGAAAAAGTACGTCGTCGGTAAATTATTTCAATTCCAGATGACGGATGAAAAACCAATAATAGATCAAGTTCTTCAGTACGAAAACCTGGTGGCAAATGTGCTCTTAGAAGACATGAAGATTTGTGAGGTTTTTCAGGCGAATGCACTACTTGAGAAATTCCCTCCCTCATGGAGTGATTATCGAAACCACCTGAAACACAAGAAAAAAGAGTTGACCCTGCAGGAATTGATCAGTTACATACGTACAGAGGAAGCCAACAGAGAAAAGGATAAGCTCTCTCCTCAATCTTTAAATTCAGTTAAAGCTAACTTAGTTGAATCTTCTAGTGCTTTCAAAGACAGGTTCAAAAATAAAGGGAAACATGGTTTCAATGATACAGTACAAAATAAAAAGGGATTTCAAATCAAAAATGTTGGAGGAAAAATTGAGAAAGCCAAACTGGTTTGTTATGTCTGTGGAAAACTAGGACACAAATCCTATCAATGCATCCAGAGAAAAGACAAACGACCTACTCCACAAGCGAATCTCGCAGAGACAGATGATATCATTGCCACTGTGGTCGTGGAGGCAAATCTGGTAGAGAACAAGTCTAACTGGATCCTAGACACCGGAGCTTCCAGACACTTCTGCTCGAACCGTGAGCTCTTCCACGACTTCCAGGACTCTTTCGATGGCGAATGTGTCTTTATGGGGAACTCTACCACAGCTGGAGTACTTGGGAAAGGGAATATACTCTTAAAACTCACTTCTGACAAAACTTTATCTTTAAGTAATGTACTGCATGTTCCTTCCCTACGTAGGAATTTGGTGTCTGGAGGTTTGCTGAATCGAGCTGGACTTAGGATTGTGTTTGAGGCCGAAAAGGTTATCATCACCAAAAATTGTGACTTTGTTGGTAAGGGATATTTAGCAGATGGTTTGTTTGTCCTTAACACTGCTTCTATTAATGAAATTGATTCACATTGTGCTTATATGGTTGAGTTTATTGATGTATGACATGGTAGACTAGGACACGTGAATATTGCATCAATTAAAAGGCTTAAAGCTCTAAATCTAATTGATACTTATGAGTTGCATGAAACCCAGAAATTTCATGTATGCGTAGAGGCAAAGTTTCACAAAAAGCCTTTTGGACCTGTCACAACTAGAAGTAGTGAGCTACTTGAGTTAATTCATTCTGACTTAGCTGATTTCAAGAACACTACTAGTAGAGGTGAAAAACATTACTATATTTCATTTGTTGACAATTTTTCTAGATATACGAAAATTTATCTACTAAAATCTAAAGATGAAGCTAGTAGTATGTTTTTTAATTCAAAACTGAAGTAGAAAACCAATTGGATAGAAAGATAAAAAGACTAAGATTTGATAGGGGAGGCGAATATAGTGATAATTTCCTTAAAGAATTTTGTGAAATGAATAGTGTCATACATGAATTCACTGCTCCTTATTCACCACAACAAAATGGAATAGCTGAACGTAAAAATAGAACGTTAAAGGAAATGATGAATGCTATGTTATTGAGCTCTGGTTTATCTGATAATATGTGGGGGGAAGCTGCGCTTTTTGCATGTTTTGTTCTTAACAAGGTCCCTCACAAAAAGCTGAATAAGACGCCGTACGAACTTTGGAAAGGATATTCACCTAACCTAAGCTACTTGAGAGAGTGGGGGTGCTTGGCAAAAGTGGCATATCCAGAATTCAAAAACCTACGGTAGGCTCTAAAACCTTTGGCTGTGTATTTATTGGTTATGCTCAAAATAGTTCAGCGTATAGATTCATGTGCTTAAGGAATGATACAATTTGTGAATATAGAGATGCTGTATTCTTTGAAAATATTTTCCCGTTCGTTAAGAATTTGAATGAATCATGTGTAACTCCAAAACAAACTTTACCCTCAATTTCTAGTGATGAGTTGGATTCTGAACGTAGTAGTGAAGTTACAAAAGATCCAGAACTTTGGAGAAGTAAAAGGCAAAAGATTAGCAAAAGTTTTGGACCTGACTTTTTAACTACCTTTTTAGTTGAAAAATTGGATAAAATAGATAATCAATTTGCTTGCATGTATCTAATAGATGAAGATCCTAAAACCTACCAAGAAGCTATTAGTTCTAGATTCTAGCTTATGGAAAGAAGCAATTAAAAGTGAAATAGACTCCATAGTCATAAATCAAACTTGAGACTTGGTAGATCTTCCTATAGGAAATAAACCTATTAAAAGCAAATGGATCTCTAAGAAGAAAATTAGACCAGATGGATCAATTGAAAACTACAAGGCTAGATTAGTGGTTGTAGGTTACACACAGAAATATGGAATTGACTATTTTGATACATATTCTCCTGTAACTAAAATAGCCACTATTAGATCTCTAATTGCTCTTGCTGCCATTCATGACCTATTAATACATCAAATGGATGTAAGAACAACATTTCTTGATGGAGATTTAGAGGAAGAGATCTATATGACACATCCTGAAGGTTTTCTAATTGCTGGTCAAGAAAATAAAGTATGCAAGCTTAGAAAATCTCTCTATGGTCTTAAACAAGCTCCTAAACAATGGTATGAGAAATTCAATAGTACTTTAGTAAACAATAGTTATAAAGTAAATTGTTCTGATACGTGTGTTTACTCAAAGTTGTTTGGAGTTGAGTGTGTGATAATATGTTTATATGTTGATGGCATGCTTATTTTTTGTACAAACTTACATGTCATTAATGATACCAAGTTATTGTTATCCTCACATTTTGAGATGAAAGATCTAGGAGAAGCTGATGTAATACTTGGTATTAAAATAAGGAAAAATGATAATGGATTCTCCTTATGCCAGTCACACTATATAGAAAAAATGTTAAAGAAATTCAACTGTTTTGATAATCCACCTGTAAGAACACCTTATGATGCTAGCATTAGTCTAAAGAAAAATAAAGATGATACGATATCTCAATCTGAATATGCAAAGATTATAGGTAGTGTTATGTTTTTAATGAACTATACTAGACCTGACATTGCATATGTTGTAAGTAGATTGAGTAGATATACACATAATCCTAGTAATGAACATTGGACCGCTCTTCATCGTTTATTGAGATATCTAAAAGGCACCATGGATTACTGTTTGCATTATAACAAGTTTCCTGCTGTGTAAGAAGGGTATTGTGATGCAAACTGGGTTACAAATAACGATGAGGTGAGCTCTACTAGCGGATATGTGTTTCTTTTAGGTGGAGGAGCTATCTCTTGGAAGTTAGCAAAGCAGACTTGCATCACACGTTCCACTATGGAATCCGAGTTCATAGCACTTGAATTAGCAGGACAAGAGGCTGAATGACTGAGAAGTCTTGTTGGAGATGTGACGTTGTGGGGGAAATCTGTACCTGTATCCCTTCATTGTGACTCGCAGGCTGCCATAGGGATTGCCAAAAACAGTGTGTACAATGGTAAGAGACGCAACGTACGTCTAAGACATGGAGCTGTGAAAGAGTTGCTGAAAAATGGCATTATCTCCTTGGATTACGTTAGGTCCGGGAGGAACTTAGCAGATCCTCTCACTAAAGGCTAAACAAGGAGGGTAATTGTAGAGTCATAAAGTTGTATGGGACTCAGCATTTGATGTTTCTCATTTGTGAATCCATAGCCCTAATTTTGGGTGGTCCAGGTATGGACTTGATGGATGTAATAAAACACAATATGAATCCATAGCCCTTCTTTTGGGTGGTCCAGGTATGGACTTGATGGATGTAATAAATCACATAGTGAATCCATAGCCCTCTTTTGGGTGGTTCTTATAAGGACTTGATGGATAATTTTCAAAGTCTTCATAGCCCAATTTTGAGTGGTTTATCGATGATAGACTTGATGAAACAACAGCTTGACCGTGAAGGTTAGGCCGCCTTCTATGAAAGAGTCAGAGTCTCTTTCTAGAGCTGCCACGATGGCCCAAGGGTTCTATGTGCATGGCAATGAATAG

mRNA sequence

ATGGCTACAATCGGATCCGGGAAGGCTCTAGCAGACTTGTCAAAATTGGAACCTCTCGATGGATCCAATTATCGCCGCTGGTCCCAGAAGCTACTTATTTTCTTTGAGCAGTTGGAGATCGACTATATCCTTACTACTGCTCAGCCCCCGTCGTCGCCACAACCACCACTGCTGACCAGTCTGCCGCCACGGCTTCAGCTACGACTGCTGATCCCGGAACGTCCACTGTTGCTGTCGGTGAGAAAAGACAAACGACCTACTCCACAAGCGAATCTCGCAGAGACAGATGATATCATTGCCACTGTGGTCGTGGAGGCAAATCTGGTAGAGAACAAGTCTAACTGGATCCTAGACACCGGAGCTTCCAGACACTTCTGCTCGAACCGTGAGCTCTTCCACGACTTCCAGGACTCTTTCGATGGCGAATGTGTCTTTATGGGGAACTCTACCACAGCTGGAGTTAGGCCGCCTTCTATGAAAGAGTCAGAGTCTCTTTCTAGAGCTGCCACGATGGCCCAAGGGTTCTATGTGCATGGCAATGAATAG

Coding sequence (CDS)

ATGGCTACAATCGGATCCGGGAAGGCTCTAGCAGACTTGTCAAAATTGGAACCTCTCGATGGATCCAATTATCGCCGCTGGTCCCAGAAGCTACTTATTTTCTTTGAGCAGTTGGAGATCGACTATATCCTTACTACTGCTCAGCCCCCGTCGTCGCCACAACCACCACTGCTGACCAGTCTGCCGCCACGGCTTCAGCTACGACTGCTGATCCCGGAACGTCCACTGTTGCTGTCGGTGAGAAAAGACAAACGACCTACTCCACAAGCGAATCTCGCAGAGACAGATGATATCATTGCCACTGTGGTCGTGGAGGCAAATCTGGTAGAGAACAAGTCTAACTGGATCCTAGACACCGGAGCTTCCAGACACTTCTGCTCGAACCGTGAGCTCTTCCACGACTTCCAGGACTCTTTCGATGGCGAATGTGTCTTTATGGGGAACTCTACCACAGCTGGAGTTAGGCCGCCTTCTATGAAAGAGTCAGAGTCTCTTTCTAGAGCTGCCACGATGGCCCAAGGGTTCTATGTGCATGGCAATGAATAG

Protein sequence

MATIGSGKALADLSKLEPLDGSNYRRWSQKLLIFFEQLEIDYILTTAQPPSSPQPPLLTSLPPRLQLRLLIPERPLLLSVRKDKRPTPQANLAETDDIIATVVVEANLVENKSNWILDTGASRHFCSNRELFHDFQDSFDGECVFMGNSTTAGVRPPSMKESESLSRAATMAQGFYVHGNE
Homology
[Close]
BLAST of Moc02g16760 vs. NCBI nr
Match: KAA0038241.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 173.7 bits (439), Expect = 1.4e-39
Identity = 91/154 (59.09%), Postives = 108/154 (70.13%), Query Frame = 0 

Query: 6   SGKALADLSKLEPLDGSNYRRWSQKLLIFFEQLEIDYILTTAQPPSSPQPPLLTSLPPRL 65
           S K L DLSKLEPLDG+NYRRWS+KLLIFFEQLE+DY+LTT  P S P     TS  P  
Sbjct: 6   SNKILPDLSKLEPLDGTNYRRWSKKLLIFFEQLEVDYVLTTDLPSSDPSATTSTSSNPES 65

Query: 66  QLR-----LLIPERPLLLSVRKDKRPTPQANLAETDDIIATVVVEANLVENKSNWILDTG 125
                    +I +R      R  ++PTPQANLAE D  I   +VE NL+ENK++WILDTG
Sbjct: 66  STGPSTSVAVIDQR----KGRPSQKPTPQANLAEQDSEIIAAIVEVNLIENKTDWILDTG 125

Query: 126 ASRHFCSNRELFHDFQDSFDGECVFMGNSTTAGV 155
           ASR+FC+NREL HD++D+ DGECV M N TTAGV
Sbjct: 126 ASRYFCTNRELLHDYEDTTDGECVSMKNLTTAGV 155

[Close]
BLAST of Moc02g16760 vs. NCBI nr
Match: KAA0048277.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 139.4 bits (350), Expect = 3.0e-29
Identity = 99/278 (35.61%), Postives = 115/278 (41.37%), Query Frame = 0 

Query: 6   SGKALADLSKLEPLDGSNYRRWSQKLLIFFEQLEIDYILTTAQPPSSPQPPLLTSLPPR- 65
           S K L DLSKLEPLDG+NYRRWSQKLLIFFEQLE+DY+LTT  P   P     TS  P  
Sbjct: 6   SNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTFDPPTTTSTSSDPES 65

Query: 66  ------------------------------------------------------------ 125
                                                                       
Sbjct: 66  STGPLTTVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFAVQKSAKEIWST 125

Query: 126 --------------------LQLRLL----------------------------IPERPL 155
                               LQ ++                             I E  +
Sbjct: 126 LESRYGGDDAGRKKYVVGKWLQFQMTDDKPIVEQIHEYENLVANVLSEGMKMCEILEANI 185

[Close]
BLAST of Moc02g16760 vs. NCBI nr
Match: KAA0041580.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK19676.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 139.4 bits (350), Expect = 3.0e-29
Identity = 88/218 (40.37%), Postives = 112/218 (51.38%), Query Frame = 0 

Query: 6   SGKALADLSKLEPLDGSNYRRWSQKLLIFFEQLEIDYILTTAQPPSSP--------QPPL 65
           S K L DLSKLEPLDG+NYR WSQKLLIFFEQLE+DY+LTT  P S P         P  
Sbjct: 6   SNKILPDLSKLEPLDGTNYRHWSQKLLIFFEQLEVDYVLTTDLPSSDPPTTTSTYSNPES 65

Query: 66  LTSLPPRLQL-------RLLIPER------------------PL------------LLSV 125
            T  P  + +       +++ PE+                  P+            + S 
Sbjct: 66  STGSPTTVAVADQVKKDQVIDPEKYAKDNKTVRGHLLNHMSEPMFDLFVVQKSAKDIWST 125

Query: 126 RKDKRPTPQAN------------------------LAETDDIIATVVVEANLVENKSNWI 155
            + +  T Q                          ++E D  I   ++EANL+ENK++WI
Sbjct: 126 LESRDRTKQEKGHKGKNSEKRQFKTTRGQIKKKKLVSEQDSEIIAAIIEANLIENKTDWI 185

[Close]
BLAST of Moc02g16760 vs. NCBI nr
Match: TYK30642.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 135.6 bits (340), Expect = 4.3e-28
Identity = 94/256 (36.72%), Postives = 112/256 (43.75%), Query Frame = 0 

Query: 6   SGKALADLSKLEPLDGSNYRRWSQKLLIFFEQLEIDYILTTAQPPSSPQPPLLTSLPPR- 65
           S K L DLSKLEPLDG+NYRRWS+KLLIFFEQLE DY+LTT    S P     TS  P  
Sbjct: 6   SNKILPDLSKLEPLDGTNYRRWSKKLLIFFEQLEFDYVLTTDLSSSDPSATTSTSSNPES 65

Query: 66  ------------------------------------------------------------ 125
                                                                       
Sbjct: 66  STGPSTTVAVTDQDIWSTLESRYGDDAGRKKYVVGKWLQFRMTDDKPVVEQIHEYENLVA 125

Query: 126 ------------LQLRLLIPERPL--------LLSVRKD--------------------- 155
                       LQ  +L+ + PL        L   +KD                     
Sbjct: 126 NVLSEGMKMCKILQANVLLEKFPLSWNDYRNHLKHKKKDLKLQELISHMRTEETNRLKDK 185

[Close]
BLAST of Moc02g16760 vs. NCBI nr
Match: KAA0045258.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK19282.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 134.4 bits (337), Expect = 9.7e-28
Identity = 87/224 (38.84%), Postives = 114/224 (50.89%), Query Frame = 0 

Query: 1   MATIGSGKALADLSKLEPLDGSNYRRWSQKLLIFFEQLEIDYILTTAQPPSSPQ------ 60
           M+ + S K L DLSKLEPLDG+NYRRWSQKLLIFF+QLE+DY+LTT  P S P       
Sbjct: 1   MSIMTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFKQLEVDYVLTTDLPSSDPPATTSTS 60

Query: 61  --------PPLLTSLPPRLQLRLLIPERPL------------------LLSVRKDKRPT- 120
                   PP   ++  +++   +I                       +  + +D R T 
Sbjct: 61  SDLESSTGPPATVAVADQVKKDQMIDLEKYAKDNKIVRGHMLNHMSDPMFDLHEDVRNTS 120

Query: 121 -------------------------------------PQANLAETDDIIATVVVEANLVE 155
                                                 +AN  + ++IIA  +VEANL+E
Sbjct: 121 SKCIIGKFLPSWNDYRNHLKHKKKDLKLQELISHMRMEEANRLKDNEIIA-AIVEANLIE 180

[Close]
BLAST of Moc02g16760 vs. ExPASy TrEMBL
Match: A0A5A7T9C8 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G00870 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 7.0e-40
Identity = 91/154 (59.09%), Postives = 108/154 (70.13%), Query Frame = 0 

Query: 6   SGKALADLSKLEPLDGSNYRRWSQKLLIFFEQLEIDYILTTAQPPSSPQPPLLTSLPPRL 65
           S K L DLSKLEPLDG+NYRRWS+KLLIFFEQLE+DY+LTT  P S P     TS  P  
Sbjct: 6   SNKILPDLSKLEPLDGTNYRRWSKKLLIFFEQLEVDYVLTTDLPSSDPSATTSTSSNPES 65

Query: 66  QLR-----LLIPERPLLLSVRKDKRPTPQANLAETDDIIATVVVEANLVENKSNWILDTG 125
                    +I +R      R  ++PTPQANLAE D  I   +VE NL+ENK++WILDTG
Sbjct: 66  STGPSTSVAVIDQR----KGRPSQKPTPQANLAEQDSEIIAAIVEVNLIENKTDWILDTG 125

Query: 126 ASRHFCSNRELFHDFQDSFDGECVFMGNSTTAGV 155
           ASR+FC+NREL HD++D+ DGECV M N TTAGV
Sbjct: 126 ASRYFCTNRELLHDYEDTTDGECVSMKNLTTAGV 155

[Close]
BLAST of Moc02g16760 vs. ExPASy TrEMBL
Match: A0A5D3D7X7 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00700 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.5e-29
Identity = 88/218 (40.37%), Postives = 112/218 (51.38%), Query Frame = 0 

Query: 6   SGKALADLSKLEPLDGSNYRRWSQKLLIFFEQLEIDYILTTAQPPSSP--------QPPL 65
           S K L DLSKLEPLDG+NYR WSQKLLIFFEQLE+DY+LTT  P S P         P  
Sbjct: 6   SNKILPDLSKLEPLDGTNYRHWSQKLLIFFEQLEVDYVLTTDLPSSDPPTTTSTYSNPES 65

Query: 66  LTSLPPRLQL-------RLLIPER------------------PL------------LLSV 125
            T  P  + +       +++ PE+                  P+            + S 
Sbjct: 66  STGSPTTVAVADQVKKDQVIDPEKYAKDNKTVRGHLLNHMSEPMFDLFVVQKSAKDIWST 125

Query: 126 RKDKRPTPQAN------------------------LAETDDIIATVVVEANLVENKSNWI 155
            + +  T Q                          ++E D  I   ++EANL+ENK++WI
Sbjct: 126 LESRDRTKQEKGHKGKNSEKRQFKTTRGQIKKKKLVSEQDSEIIAAIIEANLIENKTDWI 185

[Close]
BLAST of Moc02g16760 vs. ExPASy TrEMBL
Match: A0A5A7U214 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63G002010 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.5e-29
Identity = 99/278 (35.61%), Postives = 115/278 (41.37%), Query Frame = 0 

Query: 6   SGKALADLSKLEPLDGSNYRRWSQKLLIFFEQLEIDYILTTAQPPSSPQPPLLTSLPPR- 65
           S K L DLSKLEPLDG+NYRRWSQKLLIFFEQLE+DY+LTT  P   P     TS  P  
Sbjct: 6   SNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTFDPPTTTSTSSDPES 65

Query: 66  ------------------------------------------------------------ 125
                                                                       
Sbjct: 66  STGPLTTVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFAVQKSAKEIWST 125

Query: 126 --------------------LQLRLL----------------------------IPERPL 155
                               LQ ++                             I E  +
Sbjct: 126 LESRYGGDDAGRKKYVVGKWLQFQMTDDKPIVEQIHEYENLVANVLSEGMKMCEILEANI 185

[Close]
BLAST of Moc02g16760 vs. ExPASy TrEMBL
Match: A0A5D3E411 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84664G00650 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 2.1e-28
Identity = 94/256 (36.72%), Postives = 112/256 (43.75%), Query Frame = 0 

Query: 6   SGKALADLSKLEPLDGSNYRRWSQKLLIFFEQLEIDYILTTAQPPSSPQPPLLTSLPPR- 65
           S K L DLSKLEPLDG+NYRRWS+KLLIFFEQLE DY+LTT    S P     TS  P  
Sbjct: 6   SNKILPDLSKLEPLDGTNYRRWSKKLLIFFEQLEFDYVLTTDLSSSDPSATTSTSSNPES 65

Query: 66  ------------------------------------------------------------ 125
                                                                       
Sbjct: 66  STGPSTTVAVTDQDIWSTLESRYGDDAGRKKYVVGKWLQFRMTDDKPVVEQIHEYENLVA 125

Query: 126 ------------LQLRLLIPERPL--------LLSVRKD--------------------- 155
                       LQ  +L+ + PL        L   +KD                     
Sbjct: 126 NVLSEGMKMCKILQANVLLEKFPLSWNDYRNHLKHKKKDLKLQELISHMRTEETNRLKDK 185

[Close]
BLAST of Moc02g16760 vs. ExPASy TrEMBL
Match: A0A5A7TQW7 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1493G00950 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 4.7e-28
Identity = 87/224 (38.84%), Postives = 114/224 (50.89%), Query Frame = 0 

Query: 1   MATIGSGKALADLSKLEPLDGSNYRRWSQKLLIFFEQLEIDYILTTAQPPSSPQ------ 60
           M+ + S K L DLSKLEPLDG+NYRRWSQKLLIFF+QLE+DY+LTT  P S P       
Sbjct: 1   MSIMTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFKQLEVDYVLTTDLPSSDPPATTSTS 60

Query: 61  --------PPLLTSLPPRLQLRLLIPERPL------------------LLSVRKDKRPT- 120
                   PP   ++  +++   +I                       +  + +D R T 
Sbjct: 61  SDLESSTGPPATVAVADQVKKDQMIDLEKYAKDNKIVRGHMLNHMSDPMFDLHEDVRNTS 120

Query: 121 -------------------------------------PQANLAETDDIIATVVVEANLVE 155
                                                 +AN  + ++IIA  +VEANL+E
Sbjct: 121 SKCIIGKFLPSWNDYRNHLKHKKKDLKLQELISHMRMEEANRLKDNEIIA-AIVEANLIE 180

The following BLAST results are available for this feature:
BLAST of Moc02g16760 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0038241.11.4e-3959.09ty1-copia retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0048277.13.0e-2935.61ty1-copia retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0041580.13.0e-2940.37ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK19676.1 ty1-cop... [more]
TYK30642.14.3e-2836.72ty1-copia retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0045258.19.7e-2838.84ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK19282.1 ty1-cop... [more]
BLAST of Moc02g16760 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc02g16760 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7T9C87.0e-4059.09Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3D7X71.5e-2940.37Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7U2141.5e-2935.61Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3E4112.1e-2836.72Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7TQW74.7e-2838.84Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
BLAST of Moc02g16760 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR47592PBF68 PROTEINcoord: 89..154
NoneNo IPR availablePANTHERPTHR47592:SF5OS08G0421300 PROTEINcoord: 89..154

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc02g16760.1Moc02g16760.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding