Moc02g16590 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc02g16590
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrotran_gag_3 domain-containing protein
Locationchr2: 12479626 .. 12481165 (+)
RNA-Seq ExpressionMoc02g16590
SyntenyMoc02g16590
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGACCACACTCACGCCCACGGTTTCTACTTTTCCCTTTGATTCACCTTCCTCAACTCCATCTTCATCTCGCACATATGGCGATTCCTCAAGTCCTTATCTTCTCCACCATAATGATACTTCAAATCTGGTACTCGTGTCCGAACCCGTCACAGATGACAATTATGTGTCGTGGAGTCGTTCCATGATCATTGCCTTATCAATCAATAACAAACTCGGCTTCGTTGATGGAACTCTCGTGAAACCTTCTGGTGATCTCCTGGATATTGAATTCGGTTTCGAAATTTATTTCTGCGAGTTTGATATTCACCGAGACATTTGGTTGGACTTAAAAGGATCGATTTCAAAGGCATAATGGACCTCGAATTTTCCAGCTACGGCGTGAACTTGCCACTCTCAGTCAAGGCCAGCTTTCCATTACCATGTACTATACAAAGCTCAAAGCAATTTGGGATGAGTATGCTTCTTATCGACCGAAGTTGCACTCGTGGCCGTTGTTCATGTGGAGGCTATAACTCAGTTGAAGAATTTGTTAAATTTGAACTACTGATGACTTTTCTGATGGGGCTCAATGAATCATATGCTCATATTAGAGTACATATTCTCCTCATGGATCCACCTCATTCACTTATTAAAGCATTTTCTCTGATTTTTGAGGAAGAACAATAGATGGTCATTCCTTCTTTCTCTGCGCCTTTGTCTGTCGTTGGCCTTGCTGTTAATCATTCGCGATCCACTGCGACTTCGATTCCTCTCATCCTCGACATCACATTAATAATTGGCCTTTCTGTACGAACTGTGGCATTCAAGGACATACTATAGATCGATGTTAATTATCGTCTTCATGGCTATCCACCGGGATATCGAACCAAAGGAAGTCAACGTTCTGACTCATCAACGCATTCCTCTATTCCGTCCTCTGTGACCTTGTCTCCTCTAGTTTCTGCAACAAATTCGTCTGCCTCTGCTAACTCTATTTCACAGACGTCGATTTCTCTGGGCCCTCTTAGGCTTTCGCACAATGTCATAGCATTTTAAACATGCTTCAAACTCAACTCAAGGTGGCAAAGAATGACTCTGAGGCCTCCTCTTCATATTTGGCAGGTACTTGCCATAATACTAAATTACCACTTCCTTGCTCTAATCAGTGGCTTTTTGACACCGGTGCATCTATACATATTTGCTTTGATCGGACGACATTTGAGTCTTCAATCGTCTGTTACCTTGCCTAACAATACACGAATTAAGGTGAATTTTGTTAGTACAGTGCGTTTGTTGGACTCTCTTCTTCTTCAACCTGTCTTATTTGTTCCTGAGTTCTAATATAATCTACTGTCCATTAGTGCTCTTACATCAGATGCTTCTCTATGTGTTTTTTTTCCACTGATGGATGTTACATTCGGTAAAGGTTCACTTTGAGGACGATTAGCAAGGGTAAGCTCTATGATGGTCTTTACATTTTAGACACTTTGGATCCGGCTATCGTGGTTCCTTCTACTGTTGTGTGTGGAACTGTTGTTCATCATTTTCCATCTTAG

mRNA sequence

ATGGAGACCACACTCACGCCCACGGTTTCTACTTTTCCCTTTGATTCACCTTCCTCAACTCCATCTTCATCTCGCACATATGGCGATTCCTCAAGTCCTTATCTTCTCCACCATAATGATACTTCAAATCTGGTACTCGTGTCCGAACCCGTCACAGATGACAATTATGTGTCGTGGAGTCGTTCCATGATCATTGCCTTATCAATCAATAACAAACTCGGCTTCGTTGATGGAACTCTCGTGAAACCTTCTGGTGATCTCCTGGATATTGAATTCGGTTTCGAAATTTATTTCTGCGAGTTTGATATTCACCGAGACATTTGGTTCACTTTGAGGACGATTAGCAAGGGTAAGCTCTATGATGGTCTTTACATTTTAGACACTTTGGATCCGGCTATCGTGGTTCCTTCTACTGTTGTGTGTGGAACTGTTGTTCATCATTTTCCATCTTAG

Coding sequence (CDS)

ATGGAGACCACACTCACGCCCACGGTTTCTACTTTTCCCTTTGATTCACCTTCCTCAACTCCATCTTCATCTCGCACATATGGCGATTCCTCAAGTCCTTATCTTCTCCACCATAATGATACTTCAAATCTGGTACTCGTGTCCGAACCCGTCACAGATGACAATTATGTGTCGTGGAGTCGTTCCATGATCATTGCCTTATCAATCAATAACAAACTCGGCTTCGTTGATGGAACTCTCGTGAAACCTTCTGGTGATCTCCTGGATATTGAATTCGGTTTCGAAATTTATTTCTGCGAGTTTGATATTCACCGAGACATTTGGTTCACTTTGAGGACGATTAGCAAGGGTAAGCTCTATGATGGTCTTTACATTTTAGACACTTTGGATCCGGCTATCGTGGTTCCTTCTACTGTTGTGTGTGGAACTGTTGTTCATCATTTTCCATCTTAG

Protein sequence

METTLTPTVSTFPFDSPSSTPSSSRTYGDSSSPYLLHHNDTSNLVLVSEPVTDDNYVSWSRSMIIALSINNKLGFVDGTLVKPSGDLLDIEFGFEIYFCEFDIHRDIWFTLRTISKGKLYDGLYILDTLDPAIVVPSTVVCGTVVHHFPS
Homology
BLAST of Moc02g16590 vs. NCBI nr
Match: XP_038895765.1 (uncharacterized protein LOC120083929 [Benincasa hispida])

HSP 1 Score: 96.7 bits (239), Expect = 1.8e-16
Identity = 49/83 (59.04%), Postives = 61/83 (73.49%), Query Frame = 0

Query: 17 PSSTPSSSRTYG---------DSSSPYLLHHNDTSNLVLVSEPVTDDNYVSWSRSMIIAL 76
          PS+ PSSS  +          D  +PY LHH+DTSNLVLVSE +TDDNYVSWSRSM++ L
Sbjct: 10 PSADPSSSTDFPTTGLPLSHLDQYTPYALHHSDTSNLVLVSELLTDDNYVSWSRSMVLTL 69

Query: 77 SINNKLGFVDGTLVKPSGDLLDI 91
           I NKLGF+DG+L +P+GDLL +
Sbjct: 70 FIQNKLGFIDGSLPRPTGDLLHL 92

BLAST of Moc02g16590 vs. NCBI nr
Match: XP_038880436.1 (uncharacterized protein LOC120072090 [Benincasa hispida])

HSP 1 Score: 94.7 bits (234), Expect = 7.0e-16
Identity = 43/72 (59.72%), Postives = 59/72 (81.94%), Query Frame = 0

Query: 19 STPSSSRTYGDSSSPYLLHHNDTSNLVLVSEPVTDDNYVSWSRSMIIALSINNKLGFVDG 78
          ST     ++ D  +PY LHH+DTSNL+LVSE +T+DNYVSWS+SM+++LSI NKLGF+DG
Sbjct: 21 STTGLPLSHPDQYTPYALHHSDTSNLILVSELLTNDNYVSWSKSMVLSLSIRNKLGFIDG 80

Query: 79 TLVKPSGDLLDI 91
          +L +P+GDLL +
Sbjct: 81 SLPRPTGDLLSL 92

BLAST of Moc02g16590 vs. NCBI nr
Match: XP_022867242.1 (uncharacterized protein LOC111386973 [Olea europaea var. sylvestris])

HSP 1 Score: 94.7 bits (234), Expect = 7.0e-16
Identity = 54/124 (43.55%), Postives = 77/124 (62.10%), Query Frame = 0

Query: 18  SSTPSSSRTYGDSSSPYLLHHNDTSNLVLVSEPVTDDNYVSWSRSMIIALSINNKLGFVD 77
           +S+ +S+    D SSPY LHH+D   L+ VS+P+T DNY SWSR+M+IALS+ NK GF+D
Sbjct: 14  ASSSTSNSAIVDGSSPYFLHHSDNPGLIFVSQPLTGDNYESWSRAMVIALSVKNKSGFID 73

Query: 78  GTLVKP--SGDLLDIEFGFEIYFC--EFDIHRDIWFTLRTISKGKLYDGLYILDTLDPAI 137
           G++ KP  S DLL+       + C    D+H+     L+TI KGK    LY++  + P  
Sbjct: 74  GSIPKPKNSDDLLN------PWICNNNMDLHK-----LKTIGKGKRIGDLYVIQ-VQPLA 125

BLAST of Moc02g16590 vs. NCBI nr
Match: XP_008457013.1 (PREDICTED: uncharacterized protein LOC103496792 [Cucumis melo])

HSP 1 Score: 91.7 bits (226), Expect = 5.9e-15
Identity = 47/93 (50.54%), Postives = 70/93 (75.27%), Query Frame = 0

Query: 3   TTLTPTVSTFPFDSPSSTPSSS-----RTYGDSSSPYLLHHNDTSNLVLVSEPVTDDNYV 62
           +T++PT+   P  S ++ P++S       Y  S+SPY+L+H+DTSNL+LV+E VTD+NYV
Sbjct: 19  STVSPTIP--PSSSANNLPNTSCNTHQEQYASSNSPYILNHSDTSNLILVTELVTDNNYV 78

Query: 63  SWSRSMIIALSINNKLGFVDGTLVKPSGDLLDI 91
            WSRSM++A+SI NKLGF+D  + KP+G+LL +
Sbjct: 79  IWSRSMVLAVSIQNKLGFIDVLITKPAGELLPL 109

BLAST of Moc02g16590 vs. NCBI nr
Match: XP_022154973.1 (uncharacterized protein LOC111022117 [Momordica charantia])

HSP 1 Score: 90.9 bits (224), Expect = 1.0e-14
Identity = 41/55 (74.55%), Postives = 50/55 (90.91%), Query Frame = 0

Query: 36 LHHNDTSNLVLVSEPVTDDNYVSWSRSMIIALSINNKLGFVDGTLVKPSGDLLDI 91
          +HHNDTSNLVLVS+P+T+ NYVSWSRSM IALSI NKLGF++G+L KP+GDLL +
Sbjct: 1  MHHNDTSNLVLVSKPLTNSNYVSWSRSMTIALSIKNKLGFINGSLPKPAGDLLPV 55

BLAST of Moc02g16590 vs. ExPASy TrEMBL
Match: A0A1S3C5T4 (uncharacterized protein LOC103496792 OS=Cucumis melo OX=3656 GN=LOC103496792 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.9e-15
Identity = 47/93 (50.54%), Postives = 70/93 (75.27%), Query Frame = 0

Query: 3   TTLTPTVSTFPFDSPSSTPSSS-----RTYGDSSSPYLLHHNDTSNLVLVSEPVTDDNYV 62
           +T++PT+   P  S ++ P++S       Y  S+SPY+L+H+DTSNL+LV+E VTD+NYV
Sbjct: 19  STVSPTIP--PSSSANNLPNTSCNTHQEQYASSNSPYILNHSDTSNLILVTELVTDNNYV 78

Query: 63  SWSRSMIIALSINNKLGFVDGTLVKPSGDLLDI 91
            WSRSM++A+SI NKLGF+D  + KP+G+LL +
Sbjct: 79  IWSRSMVLAVSIQNKLGFIDVLITKPAGELLPL 109

BLAST of Moc02g16590 vs. ExPASy TrEMBL
Match: A0A6J1DIP8 (uncharacterized protein LOC111020399 OS=Momordica charantia OX=3673 GN=LOC111020399 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 4.9e-15
Identity = 37/58 (63.79%), Postives = 54/58 (93.10%), Query Frame = 0

Query: 31 SSPYLLHHNDTSNLVLVSEPVTDDNYVSWSRSMIIALSINNKLGFVDGTLVKPSGDLL 89
          ++PY LHH+D ++LVLVS+P+T++NY SWSRSM+IAL++ NK+GFVDG++V+P+GDLL
Sbjct: 25 TNPYFLHHSDNTSLVLVSDPLTNENYTSWSRSMLIALTVKNKVGFVDGSIVRPTGDLL 82

BLAST of Moc02g16590 vs. ExPASy TrEMBL
Match: A0A6J1DLQ9 (uncharacterized protein LOC111022117 OS=Momordica charantia OX=3673 GN=LOC111022117 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 4.9e-15
Identity = 41/55 (74.55%), Postives = 50/55 (90.91%), Query Frame = 0

Query: 36 LHHNDTSNLVLVSEPVTDDNYVSWSRSMIIALSINNKLGFVDGTLVKPSGDLLDI 91
          +HHNDTSNLVLVS+P+T+ NYVSWSRSM IALSI NKLGF++G+L KP+GDLL +
Sbjct: 1  MHHNDTSNLVLVSKPLTNSNYVSWSRSMTIALSIKNKLGFINGSLPKPAGDLLPV 55

BLAST of Moc02g16590 vs. ExPASy TrEMBL
Match: A0A5A7SU21 (UBN2_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold575G00310 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 3.2e-14
Identity = 45/90 (50.00%), Postives = 67/90 (74.44%), Query Frame = 0

Query: 6   TPTVSTFPFDSPSSTPSSS-----RTYGDSSSPYLLHHNDTSNLVLVSEPVTDDNYVSWS 65
           T +++  P  S ++ P++S       Y  S+SPY+L+H+DTSNL+LV+E VTD+NYV WS
Sbjct: 20  TVSLTIPPSSSANNLPNTSCNTHQEQYASSNSPYILNHSDTSNLILVTELVTDNNYVIWS 79

Query: 66  RSMIIALSINNKLGFVDGTLVKPSGDLLDI 91
           RSM++A+SI NKLGF+D  + KP+G+LL +
Sbjct: 80  RSMVLAVSIPNKLGFIDVLITKPAGELLPL 109

BLAST of Moc02g16590 vs. ExPASy TrEMBL
Match: A0A6J1DKR8 (uncharacterized protein LOC111021831 OS=Momordica charantia OX=3673 GN=LOC111021831 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 7.1e-14
Identity = 44/76 (57.89%), Postives = 57/76 (75.00%), Query Frame = 0

Query: 15 DSPSSTPSSSRTYGDSS--SPYLLHHNDTSNLVLVSEPVTDDNYVSWSRSMIIALSINNK 74
          D  SS  SSS   G  S  +PY LHH D + LVLV++P+T++NY SWSRSM+IALSI NK
Sbjct: 21 DDSSSPNSSSSVSGVDSVLNPYYLHHTDNTELVLVTQPLTEENYSSWSRSMLIALSIKNK 80

Query: 75 LGFVDGTLVKPSGDLL 89
          LGF+DG++ +P G+LL
Sbjct: 81 LGFIDGSISRPIGELL 96

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038895765.11.8e-1659.04uncharacterized protein LOC120083929 [Benincasa hispida][more]
XP_038880436.17.0e-1659.72uncharacterized protein LOC120072090 [Benincasa hispida][more]
XP_022867242.17.0e-1643.55uncharacterized protein LOC111386973 [Olea europaea var. sylvestris][more]
XP_008457013.15.9e-1550.54PREDICTED: uncharacterized protein LOC103496792 [Cucumis melo][more]
XP_022154973.11.0e-1474.55uncharacterized protein LOC111022117 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3C5T42.9e-1550.54uncharacterized protein LOC103496792 OS=Cucumis melo OX=3656 GN=LOC103496792 PE=... [more]
A0A6J1DIP84.9e-1563.79uncharacterized protein LOC111020399 OS=Momordica charantia OX=3673 GN=LOC111020... [more]
A0A6J1DLQ94.9e-1574.55uncharacterized protein LOC111022117 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A5A7SU213.2e-1450.00UBN2_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A6J1DKR87.1e-1457.89uncharacterized protein LOC111021831 OS=Momordica charantia OX=3673 GN=LOC111021... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029472Retrotransposon Copia-like, N-terminalPFAMPF14244Retrotran_gag_3coord: 37..84
e-value: 9.9E-18
score: 63.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29
NoneNo IPR availablePANTHERPTHR37610FAMILY NOT NAMEDcoord: 23..85
NoneNo IPR availablePANTHERPTHR37610:SF55SUBFAMILY NOT NAMEDcoord: 23..85

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc02g16590.1Moc02g16590.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016787 hydrolase activity