Moc02g16230 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc02g16230
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr2: 12193963 .. 12198582 (-)
RNA-Seq ExpressionMoc02g16230
SyntenyMoc02g16230
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCCAAAATTGAAAGAAGTAATGAAGGAGCTTAATGGGCCTAAGTACAAAAAGCCCAAGTGCCCAACACTTTCTTATTTTTATTAATTTGTGTGCCACCTCTTCACTTTTGCGTGCCTTTCTTTTTTATCGTGAGAGTGAGAATTTTTTTTACAGAGAAGGAGGCCATTTTCGAGGGAGCCATTCTCTGAGCTTTACAGAGAGCTCTGTGAGAAAATTTCATGAGAAATTTTTGTCCAATCATTATTGAAGAGTTTTAGAAGCTTGTAAGAGTGATTCGTGAGCATTTTTCTTTGAGAGAAAAGTGGGAGAAATCATTGTGGAGCGTTTGTAAATTCTTGAAAATTCTTCTGGCATTTAGTGGAACATGCAACGGTAGCAGAGAACTAGACGTAGCCCACATTGGGTGAACCAGTATAAATCTGGTGTCGATTTCTCTTCCCTATATTTTATTGTTCTTGTTGCTTGAGATTTAGGTTGGTTTATCTACTCTTTGAGCATAATTCCAATTTAATTTATTTCTGTTATAATTAGAACCGGAACCTGATCTGGGATTAGTTCTCATATATTGTCTGGAATTGTGATTGAGATAATATTTGTTAGCTTGTTTTATCCCTAACAAGTAGTATCAGAGCAAGGTTGAAGAACAATGTCAGGGCACTTTTAATGGGTCAGATTTTTCATTTTGGAAAAATCAGGTATTAGATTATTTGGACTCGAAAGAGTTGGAATTGCCATTAGAAGGAAAGCCGGATGATATGGGAGAAAAAGAATGGAAGAAGTTGGACAGGAAAGTGTTGGGTATGATTCGCCTGACATTAACTAAAAAAGCTCAGAGTAGCGTGGCGAAGGAGACGACCACAATGGGTTGATGAATGCCCTGGCCAACATGTATGAATAACCCTCGGTAAACAATAAGGTGTATCTCGTAACTAAATTTTTTAATTTGAAAATGGCTGAAGGTACATCTATTGCTGCCAATTTAAATGAGTTTGACGCGTTGATTACTAAACTGGTAGCTATTGATTTAGAATTCAGTGATGAAGTTTATGCTATTTTGTTATTAAGATCTTTGCCTGATAGTTGGGAACCCATGTGATCTGCTATTTCGAATTCTTGTGGAAAAGAGAAATTGAAATTTGAAGATGTTAGAGATGTAGCTCTTGCAGAAGAAATTCTCAAGAAGGACTCTGGTATCGCTTTTACTTCTGGTTAAGTATTGAATGTGGATAGAGGAAGAAATAATAACAGAGGTTATGGGAATCGAGGCAAGTCGAAAAACAACAGAAGCAGGTCGAGAAGCAGCAGGTTTGAGTGTTGGAATTGTGGTAAGACTGGACACTTGAAGAGGAATTGCAAAGCCCCGAAGAAAAATGATGGGAACGAAGCCGGTGCTAATGTTACTAAGCAGATACATGATGCTTTGGTTCTTGCAGTTGAGAGCGCTCATGACACATGGGTGATGGATTCAGGTGCGTCTTTTCATACTACAAGACAACGTGACATTCTTGAAAATTATATTGCAGGAAATCATGGAAAGGTCTATCTTGCCGATGGAGAGCCTTTGGATATCATTGGTATCGGTGACATGAATTTAAAAATGGCGAATGTTTTAGTTTGGAAAATTCGCAAGGTACGTCACGTTCAGAATATGATAAAAACTTGATTTCTGTGGGGCAGTTCGATAATGAAGGATGTGAAATATCCTTTGGTCAAGGAAACTGGAAAGTTACAAAGGGTGCCATGGTGATTGCTCGAGGAAGCAAGTCAGGAACTTTGTATGTCAACAGCAATGATAAAGACATGGTGGCTGTTGTAGATCATTCGAGCCATACTCAATTATGGCATAACAGACTGGGACATATGAGTGAAAAAGGTATGAAAATTCTTCACTCTACAGGGAAGTTACAGGGACTTAGGGCAGTTGACCACAAGCTGTGTGAAGGTTGTGTATTTGGGAAGCAGAAGCGTGTCAGTTTCTCAAAAACGGGTGCAGCGCCAAAGCCTACGAAATTGGAGCTGGTTCACACTGATGTGTGGAGGCCTTCTGAAGTTTCTTCTCTTGGAGGTTCCAAATACTATGTGACCTTTATAGATGACTCAAGCAGGAAGGTATGGACTTATTTTCTCAAACATAAGTCTGATGTATTTTCTGTTTTCAAAACTTGGAAAGCTATGGTTGAGAATGAGACAGGTATGAAAATTAAAAGCTTGAGGTCAGATAATGGTGGTGAATATGTTGATGGGGAATTTAAAAATTATTGTGCAGATAGTGGAATTGTGATGGTAAAGACTATTCCAGGGACACCACAGCAGAACGGTGTGGTAGAGAGAATGAACAGGACGCTGAATGAGCTTGCCAGGAGCATGAGATTACATGCGGGATTGCCTAAGATGTTCTGGGCAGAGGCAATCAACACTGCAACCTATCTGATCAATAGGAGCCCGACCATATCACTAGACTTCAAATTGCCTGGAGAAGTCTAGAGCGGTAAACAAGTAAACCTTTCTCATTTAAAGGTTTTTAGCTGTGTATCTTACCTTTACATTGATGCTGAAGACAGGAGTAAACTAAATGCTAAATCCAAGAAGTGTTATTTTCTTGGTTATGGCGGAGCTAAGATGGGCTATAGGTTTTGGGACGACCAAAATACAAAAATTATCAGAAGCAAGAACGTGATCTTCAATGAGGAGGTTCTGTACAAAGATAGAGCAAATGATGAATCTGGAAAGTCAAAGTCAAATGAAAGCACAGAAGAGAAGACTAGGTACATCAATCTTCCCAGAGTTGAGACCAAGACAATAAGAAATGAAGATCATAGTACAACTACTCCTGAGGAACCAGTTATGGAATCTGAGGAAGAGGTTGTTGAACTTGATGGACCAGTTGTTGAAATTGAAGAAGTTCAGAGAACACCACTTACAACAGTTAGGAGATCTAGCAGGACTATTATACCACCACATAGGTATTCCCTTACTTTGAATTATATATTATTGACTTACAGAGGTGAACCTGAATGTTATGAAGAAGCAATTCAGTTGGAAGATTCTGTCAAGTGGGAGTTAGCCATAAAGGATGAAATGAATTCTCTTATGACAAACCAGACATGACAATTTACTGAGTTACCAAGAGGTAAGAAAGCTTTGTAGAATAAATGGGTGTATAGAATCAAACAGGAGCTTGATGGCAGCAAAAGATATAAAGCAAGACTTGTAGTCAAAGACTTTCAACAAAAGGAAGGTATTGACTTTAATGAAATTTTTTCTCCAGTAGTTAAACTAACTACCATTAGAATTGAGTGGCAGAAGAAGATTTGTTTCTGGAACAAATGGATGTAAAAACAGCTTTTCTTCACGGTAATTTGGAGGAAGAAATTTACATGAAGCAGCCACAAGGATTTACAGTATAGGGACAAGAGAAAATGGTTTGTAAACTTCAAAGAAACTTATATGGTCTCAAACAGGCTCCCAGACAGTGGTATAAGAAGTTTGACAGTTTTATGTGCAATAATGGATTTTAGAGGTGTCAGGCAGATCATTGTTGCTACATAAGAACTGAGGATAACTCTTCTATTATTTTATTGCTATATGTTGATGATGTGTTAATAGCAGGACCAAACAAACAGGAAATTCTAAAGATAAAGGTTGAATTATCTGGAGAATTTGATATGAAAGATTTGGGAGCTGCCAAACAAATCCTAGGGATGAGAATCGAGAGAAAAGATGGTACGTTAACATTGTCACAGGAAGAATATGTAAAAAAGGTGCTAAACAGATTTTACATGGGAGATGCAAAACCTGTGAGTACTCCTTTAACTTGTCATTTTAAATTATCTAAGGAGCACTCACCCACTACGGAGCAAGAAAGAGATTATATGGCTAGAATTCCATACACTTCAGCTATAGGTACCCTGATGTATGCCATGGTTTGCACAAGACTAGATATTGCACATGCAGTGGGAGTTGTTAGCAGGTATATGAATAATCCAGAGAAGTAGTGGGAAGCTGTGAAGTGTATCTTCAGATACTTGAGAGGAACAACTGATTATGCTCTACATTTTAAAAGGTCAGATTTTAAATTGCAGGGCTATGTTGATGCAGATATGACAGGTGATACAGATGGCAGAAAAAGTACTACCGGGTATGTATTTACTTTGGGTAATATTGCTATTAGTTGAGTCTCTAGATTGCAAAAGATAGTATCACTTTCTACTACAGAAGCTGAGTATGTTGCAGTTACTGAGGCAAGTAAAGAGATGATATGACTTCAGTCCTTTTTAGAAGAACTTGGCTTGAAATTGGGAAAAGGGACTTTGTATTGTGACGGTTAAAGAGCTATTCATTTAGCAAAGAATCCTGTATTTTATTCGAGAACGAAACATATACAGATAAGGTACCATTTTATCATATTAGCTTTGGAAGATGGGGTGCTGGTGCTTGAAAAGATTCCAGGAAGTGAAAATCCAGCTAATATGTTTACCAAGGTCATCCCTGTTGATAAACTGAAGTTGTGCGCAACTTCAGTTGGACTTCTCCATGAGTAGAGAGGAGCCGCTACCGTTGCAGAAGAGACGTGATGCTTGTTTTGTCTCCAAGTGGGAGATTGTTGGGAATTAA

mRNA sequence

ATGGAGCCAAAATTGAAAGAAGTATTAGATTATTTGGACTCGAAAGAGTTGGAATTGCCATTAGAAGGAAAGCCGGATGATATGGGAGAAAAAGAATGGAAGAAGTTGGACAGGAAAGTGTTGGGTACATCTATTGCTGCCAATTTAAATGAGTTTGACGCGTTGATTACTAAACTGGTAGCTATTGATTTAGAATTCAGTGATGAAGTTTATGCTATTTTGTTATTAAGATCTTTGCCTGATATATTGAATGTGGATAGAGGAAGAAATAATAACAGAGGTTATGGGAATCGAGGCAAGTCGAAAAACAACAGAAGCAGGTCGAGAAGCAGCAGGTTTGAGTGTTGGAATTGTGGTAAGACTGGACACTTGAAGAGGAATTGCAAAGCCCCGAAGAAAAATGATGGGAACGAAGCCGGTGCTAATGTTACTAAGCAGATACATGATGCTTTGGTTCTTGCAGTTGAGAGCGCTCATGACACATGGGTGATGGATTCAGGTGCGTCTTTTCATACTACAAGACAACGTGACATTCTTGAAAATTATATTGCAGGAAATCATGGAAAGGTCTATCTTGCCGATGGAGAGCCTTTGGATATCATTGAATATGATAAAAACTTGATTTCTGTGGGGCAGTTCGATAATGAAGGATGTGAAATATCCTTTGGTCAAGGAAACTGGAAAGTTACAAAGGGTGCCATGGTGATTGCTCGAGGAAGCAAGTCAGGAACTTTAGTTGAGACCAAGACAATAAGAAATGAAGATCATAGTACAACTACTCCTGAGGAACCAGTTATGGAATCTGAGGAAGAGGTTGTTGAACTTGATGGACCAGTTGTTGAAATTGAAGAATTGGACTTCTCCATGAGTAGAGAGGAGCCGCTACCGTTGCAGAAGAGACGTGATGCTTGTTTTGTCTCCAAGTGGGAGATTGTTGGGAATTAA

Coding sequence (CDS)

ATGGAGCCAAAATTGAAAGAAGTATTAGATTATTTGGACTCGAAAGAGTTGGAATTGCCATTAGAAGGAAAGCCGGATGATATGGGAGAAAAAGAATGGAAGAAGTTGGACAGGAAAGTGTTGGGTACATCTATTGCTGCCAATTTAAATGAGTTTGACGCGTTGATTACTAAACTGGTAGCTATTGATTTAGAATTCAGTGATGAAGTTTATGCTATTTTGTTATTAAGATCTTTGCCTGATATATTGAATGTGGATAGAGGAAGAAATAATAACAGAGGTTATGGGAATCGAGGCAAGTCGAAAAACAACAGAAGCAGGTCGAGAAGCAGCAGGTTTGAGTGTTGGAATTGTGGTAAGACTGGACACTTGAAGAGGAATTGCAAAGCCCCGAAGAAAAATGATGGGAACGAAGCCGGTGCTAATGTTACTAAGCAGATACATGATGCTTTGGTTCTTGCAGTTGAGAGCGCTCATGACACATGGGTGATGGATTCAGGTGCGTCTTTTCATACTACAAGACAACGTGACATTCTTGAAAATTATATTGCAGGAAATCATGGAAAGGTCTATCTTGCCGATGGAGAGCCTTTGGATATCATTGAATATGATAAAAACTTGATTTCTGTGGGGCAGTTCGATAATGAAGGATGTGAAATATCCTTTGGTCAAGGAAACTGGAAAGTTACAAAGGGTGCCATGGTGATTGCTCGAGGAAGCAAGTCAGGAACTTTAGTTGAGACCAAGACAATAAGAAATGAAGATCATAGTACAACTACTCCTGAGGAACCAGTTATGGAATCTGAGGAAGAGGTTGTTGAACTTGATGGACCAGTTGTTGAAATTGAAGAATTGGACTTCTCCATGAGTAGAGAGGAGCCGCTACCGTTGCAGAAGAGACGTGATGCTTGTTTTGTCTCCAAGTGGGAGATTGTTGGGAATTAA

Protein sequence

MEPKLKEVLDYLDSKELELPLEGKPDDMGEKEWKKLDRKVLGTSIAANLNEFDALITKLVAIDLEFSDEVYAILLLRSLPDILNVDRGRNNNRGYGNRGKSKNNRSRSRSSRFECWNCGKTGHLKRNCKAPKKNDGNEAGANVTKQIHDALVLAVESAHDTWVMDSGASFHTTRQRDILENYIAGNHGKVYLADGEPLDIIEYDKNLISVGQFDNEGCEISFGQGNWKVTKGAMVIARGSKSGTLVETKTIRNEDHSTTTPEEPVMESEEEVVELDGPVVEIEELDFSMSREEPLPLQKRRDACFVSKWEIVGN
Homology
BLAST of Moc02g16230 vs. NCBI nr
Match: XP_022152845.1 (uncharacterized protein LOC111020469 [Momordica charantia])

HSP 1 Score: 318.5 bits (815), Expect = 6.3e-83
Identity = 194/363 (53.44%), Postives = 209/363 (57.58%), Query Frame = 0

Query: 8   VLDYLDSKELELPLEGKPDDMGEKEWKKLDRKVLG------------------------- 67
           VLDYL SKELE PLEGKPDDMGEKEWKKLDRKVLG                         
Sbjct: 577 VLDYLHSKELEFPLEGKPDDMGEKEWKKLDRKVLGTIRLTLTKNVQSSVAKTTTMGLMNA 636

Query: 68  ----------------------------TSIAANLNEFDALITKLVAIDLEFSDEVYAIL 127
                                       T I A+LNEFD LI KLVA+DLEFS EVYAIL
Sbjct: 637 LANMYEKASVNNKVYLATKFFNLKMAESTPITAHLNEFDVLINKLVAVDLEFSHEVYAIL 696

Query: 128 LLRSLPD---------------------------------------------ILNVDRGR 187
           LLRSLPD                                             +LNVDRGR
Sbjct: 697 LLRSLPDSWEPMRAAISNSCEKEKLKFEDVRDAALAEEIRRKDSGIAPTSGSVLNVDRGR 756

Query: 188 NNNRGYGNRGKSKNNRSRSRSSRFECWNCGKTGHLKRNCKAPKKNDGNEAGANVTKQIHD 247
           NNNRGYGNRGKSKNNRSRSR+SRFECWNCGK GHLK NCKAPKKN+GNEA ANV +QIHD
Sbjct: 757 NNNRGYGNRGKSKNNRSRSRNSRFECWNCGKIGHLKSNCKAPKKNEGNEADANVAEQIHD 816

Query: 248 ALVLAVESAHDTWVMDSGASFHTTRQRDILENYIAGNHGKVYLADGEPLDIIEYDK---- 261
           ALV+AVESAHDTWVMDS                  GNHGKVYLADGEPLDII   +    
Sbjct: 817 ALVIAVESAHDTWVMDS------------------GNHGKVYLADGEPLDIIGIGEVNLK 876

BLAST of Moc02g16230 vs. NCBI nr
Match: PON60333.1 (Zinc finger, CCHC-type [Parasponia andersonii])

HSP 1 Score: 212.2 bits (539), Expect = 6.3e-51
Identity = 133/377 (35.28%), Postives = 193/377 (51.19%), Query Frame = 0

Query: 7   EVLDYLDSKELELPL-EGKPDDMGEKEWKKLDRKVL------------------------ 66
           ++ DYL +K+L  PL   KP+ M + +W+ LDR+VL                        
Sbjct: 25  QINDYLHNKKLHQPLSRKKPEKMEDDDWQLLDRQVLGIIRLTLTKNVAHNVAEAKTTAEM 84

Query: 67  ------------------------------GTSIAANLNEFDALITKLVAIDLEFSDEVY 126
                                         G S+A ++NEF+ ++++L ++++ F +EV 
Sbjct: 85  MSILSDMYEKPSANNKVHLMKKLFYLKMGEGASVATHINEFNTIVSQLTSVEINFDNEVR 144

Query: 127 AILLLRSLP-------------------------------DILNVDRG------------ 186
           A++LL SLP                               ++  +D G            
Sbjct: 145 ALILLASLPTSWEPMRAAVSNSVGKEKLQFNDVRDRILAEEVRRIDSGEGASSSSALNLK 204

Query: 187 -------RNNNRGYGNRGKSKNNRSRSRSS-RFECWNCGKTGHLKRNCKAPKKNDGNEAG 246
                  +N+NRG  ++ KS+N R++SRS  R ECWNCGKTGH+K+NC+AP+K+D     
Sbjct: 205 NRDRSSEKNSNRG-RDKSKSRNGRNKSRSKRRMECWNCGKTGHIKKNCRAPRKDDSRNDA 264

Query: 247 ANVTKQIHDALVLAVESAHDTWVMDSGASFHTTRQRDILENYIAGNHGKVYLADGEPLDI 254
             +T ++ DAL+L+V++  D+WV+DSGASFHTT  RD+LENYIAGN+GKVYLADGEPLDI
Sbjct: 265 NAITDEVQDALLLSVDNPIDSWVLDSGASFHTTAHRDVLENYIAGNYGKVYLADGEPLDI 324

BLAST of Moc02g16230 vs. NCBI nr
Match: RVW87710.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 209.1 bits (531), Expect = 5.4e-50
Identity = 148/405 (36.54%), Postives = 207/405 (51.11%), Query Frame = 0

Query: 7   EVLDYLDSKELELPLEG-KPDDMGEKEWKKLDRKVLGT---------------------- 66
           ++ DYL  ++L LPL G KP+ M  +EW  LDR+VLG                       
Sbjct: 25  QIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSRSVAHNVVKEKTTADL 84

Query: 67  ----SIAANLNEFDALITKLVAIDLEFSDEVYAILLLRSLPD------------------ 126
               S+A +LNEF+ +  +L +++++F DE+ A+++L SLP+                  
Sbjct: 85  MKALSVAQHLNEFNTITNQLSSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEKL 144

Query: 127 ---------------------------ILNVD-RGRNNNR----GYGNRGKSKNNRSRSR 186
                                       LN++ RGR NNR    G  N   S  NRS+SR
Sbjct: 145 KYNDIRDLILAEEIRRRDAGETSGSGSALNLETRGRGNNRNSNQGRSNSRNSNRNRSKSR 204

Query: 187 S-SRFECWNCGKTGHLKRNCKAPKKNDGNEAGANVTKQIHDALVLAVESAHDTWVMDSGA 246
           S  + +CWNCGKTGH KR CK+PKK + +++   VT+++ DAL+LAV+S  D WV+DSGA
Sbjct: 205 SGQQVQCWNCGKTGHFKRQCKSPKKKNEDDSANAVTEEVQDALLLAVDSPLDDWVLDSGA 264

Query: 247 SFHTTRQRDILENYIAGNHGKVYLADGEPLDII------------------------EYD 301
           SFHTT  R+I++NY+AG+ GKVYLADG  LD++                        +  
Sbjct: 265 SFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLEKVRHIPDLR 324

BLAST of Moc02g16230 vs. NCBI nr
Match: RVW42863.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 207.6 bits (527), Expect = 1.6e-49
Identity = 148/408 (36.27%), Postives = 207/408 (50.74%), Query Frame = 0

Query: 7   EVLDYLDSKELELPLEG-KPDDMGEKEWKKLDRKVLG----------------------- 66
           ++ DYL  ++L LPL G KP+ M  +EW  LDR+VLG                       
Sbjct: 25  QIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSRSVAHNVVKEKTTANL 84

Query: 67  ------TSIAANLNEFDALITKLVAIDLEFSDEVYAILLLRSLPD--------------- 126
                  S+A +LNEF+ +  +L +++++F DE+ A+++L SLP+               
Sbjct: 85  MKMAENASVAQHLNEFNTITNQLSSVEIDFDDEICALIVLASLPNSWEAMRMAVSNSTGK 144

Query: 127 ------------------------------ILNVD-RGRNNNR----GYGNRGKSKNNRS 186
                                          LN++ RGR NNR    G  N   S  NRS
Sbjct: 145 EKLKYNDIRDLILDEEIRRRDAGETSGSGSALNLETRGRGNNRNSNQGRSNSRNSNRNRS 204

Query: 187 RSRS-SRFECWNCGKTGHLKRNCKAPKKNDGNEAGANVTKQIHDALVLAVESAHDTWVMD 246
           +SRS  + +CWNCGKTGH KR CK+PKK + +++   VT+++ DAL+LAV+S  D WV+D
Sbjct: 205 KSRSGQQVQCWNCGKTGHFKRQCKSPKKKNEDDSANVVTEEVQDALLLAVDSPLDDWVLD 264

Query: 247 SGASFHTTRQRDILENYIAGNHGKVYLADGEPLDII------------------------ 301
           SGASFHTT  R+I++NY+AG+ GKVYLADG  LD++                        
Sbjct: 265 SGASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLEKVRHIP 324

BLAST of Moc02g16230 vs. NCBI nr
Match: RVW67125.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 205.7 bits (522), Expect = 5.9e-49
Identity = 145/397 (36.52%), Postives = 204/397 (51.39%), Query Frame = 0

Query: 7   EVLDYLDSKELELPLEG-KPDDMGEKEWKKLDRK------------------VLGTSIAA 66
           ++ DYL  ++L LPL G KP+ M  +EW  LDR+                      S+A 
Sbjct: 25  QIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQPSANNKVHLMKKLFNLKMAENASVAQ 84

Query: 67  NLNEFDALITKLVAIDLEFSDEVYAILLLRSLPD-------------------------- 126
           +LNEF+ +  +L +++++F DE+ A+++L SLP+                          
Sbjct: 85  HLNEFNTITNQLSSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDL 144

Query: 127 -------------------ILNVD-RGRNNNR----GYGNRGKSKNNRSRSRS-SRFECW 186
                               LN++ RGR NNR    G  N   S  NRS+SRS  + +CW
Sbjct: 145 ILAEEIRRRDAGETSGSGSALNLETRGRGNNRNSNQGRSNSRNSNRNRSKSRSGQQVQCW 204

Query: 187 NCGKTGHLKRNCKAPKKNDGNEAGANVTKQIHDALVLAVESAHDTWVMDSGASFHTTRQR 246
           NCGKTGH KR CK+PKK + +++   VT+++ DAL+LAV+S  D WV+DSGASFHTT  R
Sbjct: 205 NCGKTGHFKRQCKSPKKKNEDDSANAVTEEVQDALLLAVDSPLDDWVLDSGASFHTTPHR 264

Query: 247 DILENYIAGNHGKVYLADGEPLDII------------------------EYDKNLISVGQ 301
           +I++NY+AG+ GKVYLADG  LD++                        +  +NLISVGQ
Sbjct: 265 EIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLEKVRHIPDLRRNLISVGQ 324

BLAST of Moc02g16230 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 3.3e-18
Identity = 78/290 (26.90%), Postives = 119/290 (41.03%), Query Frame = 0

Query: 42  GTSIAANLNEFDALITKLVAIDLEFSDEVYAILLLRSLPD-------------------- 101
           GT+  ++LN F+ LIT+L  + ++  +E  AILLL SLP                     
Sbjct: 115 GTNFLSHLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKTTIELKD 174

Query: 102 ---------------------ILNVDRGRNNNR---GYGNRGKSKNNRSRSRSSRFECWN 161
                                ++   RGR+  R    YG  G    +++RS+S    C+N
Sbjct: 175 VTSALLLNEKMRKKPENQGQALITEGRGRSYQRSSNNYGRSGARGKSKNRSKSRVRNCYN 234

Query: 162 CGKTGHLKRNCKAPKKNDGNEAGAN------VTKQIHDALVLAVESAHD---------TW 221
           C + GH KR+C  P+K  G  +G           Q +D +VL +    +          W
Sbjct: 235 CNQPGHFKRDCPNPRKGKGETSGQKNDDNTAAMVQNNDNVVLFINEEEECMHLSGPESEW 294

Query: 222 VMDSGASFHTTRQRDILENYIAGNHGKVYLAD------------------------GEPL 249
           V+D+ AS H T  RD+   Y+AG+ G V + +                         +  
Sbjct: 295 VVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDVR 354

BLAST of Moc02g16230 vs. ExPASy TrEMBL
Match: A0A6J1DF43 (uncharacterized protein LOC111020469 OS=Momordica charantia OX=3673 GN=LOC111020469 PE=4 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 3.0e-83
Identity = 194/363 (53.44%), Postives = 209/363 (57.58%), Query Frame = 0

Query: 8   VLDYLDSKELELPLEGKPDDMGEKEWKKLDRKVLG------------------------- 67
           VLDYL SKELE PLEGKPDDMGEKEWKKLDRKVLG                         
Sbjct: 577 VLDYLHSKELEFPLEGKPDDMGEKEWKKLDRKVLGTIRLTLTKNVQSSVAKTTTMGLMNA 636

Query: 68  ----------------------------TSIAANLNEFDALITKLVAIDLEFSDEVYAIL 127
                                       T I A+LNEFD LI KLVA+DLEFS EVYAIL
Sbjct: 637 LANMYEKASVNNKVYLATKFFNLKMAESTPITAHLNEFDVLINKLVAVDLEFSHEVYAIL 696

Query: 128 LLRSLPD---------------------------------------------ILNVDRGR 187
           LLRSLPD                                             +LNVDRGR
Sbjct: 697 LLRSLPDSWEPMRAAISNSCEKEKLKFEDVRDAALAEEIRRKDSGIAPTSGSVLNVDRGR 756

Query: 188 NNNRGYGNRGKSKNNRSRSRSSRFECWNCGKTGHLKRNCKAPKKNDGNEAGANVTKQIHD 247
           NNNRGYGNRGKSKNNRSRSR+SRFECWNCGK GHLK NCKAPKKN+GNEA ANV +QIHD
Sbjct: 757 NNNRGYGNRGKSKNNRSRSRNSRFECWNCGKIGHLKSNCKAPKKNEGNEADANVAEQIHD 816

Query: 248 ALVLAVESAHDTWVMDSGASFHTTRQRDILENYIAGNHGKVYLADGEPLDIIEYDK---- 261
           ALV+AVESAHDTWVMDS                  GNHGKVYLADGEPLDII   +    
Sbjct: 817 ALVIAVESAHDTWVMDS------------------GNHGKVYLADGEPLDIIGIGEVNLK 876

BLAST of Moc02g16230 vs. ExPASy TrEMBL
Match: A0A2N9ESI4 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS5426 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 9.5e-53
Identity = 134/347 (38.62%), Postives = 191/347 (55.04%), Query Frame = 0

Query: 7   EVLDYLDSKELELPLEG-KPDDMGEKEWKKLDRKVL------------------------ 66
           ++ DYL  K+L LPL G KP+DM + EW  LDR+VL                        
Sbjct: 25  QIEDYLYGKKLHLPLLGEKPEDMEDAEWTLLDRQVLGVIRLTLSRTVAHNVVKEKTTAEL 84

Query: 67  ------------------------------GTSIAANLNEFDALITKLVAIDLEFSDEVY 126
                                         GT++A +LNEF+ +  +L ++++EF DE+ 
Sbjct: 85  MTALCGMYEKPSANNKVHLMKKLFNLKMAEGTAVAQHLNEFNTITNQLSSVEIEFDDEIR 144

Query: 127 AILLLRSLPD-----------------ILNVD-RGRNNNRGYGNRGKSKNNRSRSRSS-- 186
           A+++L SLP+                  LN++ RGR  +R Y NRG+SK+ + RS+S   
Sbjct: 145 ALIVLASLPNSEEVRRRDAGETSSSGSALNLEARGRGKDRNY-NRGRSKSRKGRSKSKPG 204

Query: 187 -RFECWNCGKTGHLKRNCKAPKKNDGNEAGANVTKQIHDALVLAVESAHDTWVMDSGASF 246
            + ECWNCGKTGH+++NC   KK + N++   VT+++HDAL+L+V+S  ++WV+DSGASF
Sbjct: 205 RQLECWNCGKTGHIRKNCWELKKKNENDSANVVTEEVHDALLLSVDSPIESWVLDSGASF 264

Query: 247 HTTRQRDILENYIAGNHGKVYLADGEPLDII------------------------EYDKN 254
           HTT  R+I++NY+AG+ GKVYLAD E LD++                        E  +N
Sbjct: 265 HTTAHREIIQNYVAGDFGKVYLADDEALDVVGMGDVRITLPNGSVWLLQKVRHVPELKRN 324

BLAST of Moc02g16230 vs. ExPASy TrEMBL
Match: A0A2P5CH01 (Zinc finger, CCHC-type OS=Parasponia andersonii OX=3476 GN=PanWU01x14_153190 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 3.1e-51
Identity = 133/377 (35.28%), Postives = 193/377 (51.19%), Query Frame = 0

Query: 7   EVLDYLDSKELELPL-EGKPDDMGEKEWKKLDRKVL------------------------ 66
           ++ DYL +K+L  PL   KP+ M + +W+ LDR+VL                        
Sbjct: 25  QINDYLHNKKLHQPLSRKKPEKMEDDDWQLLDRQVLGIIRLTLTKNVAHNVAEAKTTAEM 84

Query: 67  ------------------------------GTSIAANLNEFDALITKLVAIDLEFSDEVY 126
                                         G S+A ++NEF+ ++++L ++++ F +EV 
Sbjct: 85  MSILSDMYEKPSANNKVHLMKKLFYLKMGEGASVATHINEFNTIVSQLTSVEINFDNEVR 144

Query: 127 AILLLRSLP-------------------------------DILNVDRG------------ 186
           A++LL SLP                               ++  +D G            
Sbjct: 145 ALILLASLPTSWEPMRAAVSNSVGKEKLQFNDVRDRILAEEVRRIDSGEGASSSSALNLK 204

Query: 187 -------RNNNRGYGNRGKSKNNRSRSRSS-RFECWNCGKTGHLKRNCKAPKKNDGNEAG 246
                  +N+NRG  ++ KS+N R++SRS  R ECWNCGKTGH+K+NC+AP+K+D     
Sbjct: 205 NRDRSSEKNSNRG-RDKSKSRNGRNKSRSKRRMECWNCGKTGHIKKNCRAPRKDDSRNDA 264

Query: 247 ANVTKQIHDALVLAVESAHDTWVMDSGASFHTTRQRDILENYIAGNHGKVYLADGEPLDI 254
             +T ++ DAL+L+V++  D+WV+DSGASFHTT  RD+LENYIAGN+GKVYLADGEPLDI
Sbjct: 265 NAITDEVQDALLLSVDNPIDSWVLDSGASFHTTAHRDVLENYIAGNYGKVYLADGEPLDI 324

BLAST of Moc02g16230 vs. ExPASy TrEMBL
Match: A0A2N9GTI4 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS30874 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 2.0e-50
Identity = 132/356 (37.08%), Postives = 189/356 (53.09%), Query Frame = 0

Query: 7   EVLDYLDSKELELPLEG-KPDDMGEKEWKKLDRK-------------------------- 66
           ++ DYL  K+L LPL G KP+DM + EW  LDR+                          
Sbjct: 25  QIEDYLYGKKLHLPLLGEKPEDMEDAEWTLLDRQEKTTAELMTALCGMYEKPSANNKVHL 84

Query: 67  ---------VLGTSIAANLNEFDALITKLVAIDLEFSDEVYAILLLRSLPD--------- 126
                      GT++A +LNEF+ +  +L ++++EF DE+ A+++L SLP+         
Sbjct: 85  MKKLFNLKMAEGTAVAQHLNEFNTITNQLSSVEIEFDDEIRALIVLASLPNSWEAMRMAV 144

Query: 127 ------------------------------------ILNVD-RGRNNNRGYGNRGKSKNN 186
                                                LN++ RGR  +R Y NRG+SK+ 
Sbjct: 145 SNSAGKGKLKYNDIRDLILGEEVRRRDAGETSSSGSALNLEARGRGKDRNY-NRGRSKSR 204

Query: 187 RSRSRSS---RFECWNCGKTGHLKRNCKAPKKNDGNEAGANVTKQIHDALVLAVESAHDT 246
           + RS+S    + ECWNCGKTGH+++NC   KK + N++   VT+++HDAL+L+V+S  ++
Sbjct: 205 KGRSKSKPGRQLECWNCGKTGHIRKNCWELKKKNENDSANVVTEEVHDALLLSVDSPIES 264

Query: 247 WVMDSGASFHTTRQRDILENYIAGNHGKVYLADGEPLDII-------------------- 254
           WV+DSGASFHTT  R+I++NY+AG+ GKVYLAD E LD++                    
Sbjct: 265 WVLDSGASFHTTAHREIIQNYVAGDFGKVYLADDEALDVVGMGDVRITLPNGSVWLLQKV 324

BLAST of Moc02g16230 vs. ExPASy TrEMBL
Match: A0A2N9HHD8 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39035 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 2.0e-50
Identity = 132/356 (37.08%), Postives = 189/356 (53.09%), Query Frame = 0

Query: 7   EVLDYLDSKELELPLEG-KPDDMGEKEWKKLDRK-------------------------- 66
           ++ DYL  K+L LPL G KP+DM + EW  LDR+                          
Sbjct: 25  QIEDYLYGKKLHLPLLGEKPEDMEDAEWTLLDRQEKTTAELMTALCGMYEKPSANNKVHL 84

Query: 67  ---------VLGTSIAANLNEFDALITKLVAIDLEFSDEVYAILLLRSLPD--------- 126
                      GT++A +LNEF+ +  +L ++++EF DE+ A+++L SLP+         
Sbjct: 85  MKKLFNLKMAEGTAVAQHLNEFNTITNQLSSVEIEFDDEIRALIVLASLPNSWEAMRMAV 144

Query: 127 ------------------------------------ILNVD-RGRNNNRGYGNRGKSKNN 186
                                                LN++ RGR  +R Y NRG+SK+ 
Sbjct: 145 SNSAGKGKLKYNDIRDLILGEEVRRRDAGETSSSGSALNLEARGRGKDRNY-NRGRSKSR 204

Query: 187 RSRSRSS---RFECWNCGKTGHLKRNCKAPKKNDGNEAGANVTKQIHDALVLAVESAHDT 246
           + RS+S    + ECWNCGKTGH+++NC   KK + N++   VT+++HDAL+L+V+S  ++
Sbjct: 205 KGRSKSKPGRQLECWNCGKTGHIRKNCWELKKKNENDSANVVTEEVHDALLLSVDSPIES 264

Query: 247 WVMDSGASFHTTRQRDILENYIAGNHGKVYLADGEPLDII-------------------- 254
           WV+DSGASFHTT  R+I++NY+AG+ GKVYLAD E LD++                    
Sbjct: 265 WVLDSGASFHTTAHREIIQNYVAGDFGKVYLADDEALDVVGMGDVRITLPNGSVWLLQKV 324

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022152845.16.3e-8353.44uncharacterized protein LOC111020469 [Momordica charantia][more]
PON60333.16.3e-5135.28Zinc finger, CCHC-type [Parasponia andersonii][more]
RVW87710.15.4e-5036.54Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera][more]
RVW42863.11.6e-4936.27Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera][more]
RVW67125.15.9e-4936.52Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera][more]
Match NameE-valueIdentityDescription
P109783.3e-1826.90Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
Match NameE-valueIdentityDescription
A0A6J1DF433.0e-8353.44uncharacterized protein LOC111020469 OS=Momordica charantia OX=3673 GN=LOC111020... [more]
A0A2N9ESI49.5e-5338.62Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS5426 PE=4 SV=1[more]
A0A2P5CH013.1e-5135.28Zinc finger, CCHC-type OS=Parasponia andersonii OX=3476 GN=PanWU01x14_153190 PE=... [more]
A0A2N9GTI42.0e-5037.08Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS30874 PE=4 SV=1[more]
A0A2N9HHD82.0e-5037.08Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39035 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 114..130
e-value: 2.0E-4
score: 30.7
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 114..129
e-value: 1.7E-5
score: 24.7
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 115..129
score: 10.575755
NoneNo IPR availableGENE3D4.10.60.10coord: 85..145
e-value: 3.3E-7
score: 32.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 87..108
NoneNo IPR availablePANTHERPTHR34676:SF1ZINC FINGER, CCHC-TYPE, TUBBY C-TERMINAL-LIKE DOMAIN PROTEIN-RELATEDcoord: 81..245
NoneNo IPR availablePANTHERPTHR34676FAMILY NOT NAMEDcoord: 81..245
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 111..134

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc02g16230.1Moc02g16230.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding