Moc02g16140 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc02g16140
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr2: 12128732 .. 12131033 (-)
RNA-Seq Expression	Moc02g16140
Synteny	Moc02g16140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGCAAGATTTGAGTTAGAGAAATTTGACGGAAAAGGGGATTTCGGCCTTTGGAAGAAGAAGATGAAGGCGTTACTTGTGCAACAAAAGGTTGCCAAAGCCCTTGATTCAAGTAAGTATTCTGAATATGTATCTAAAGAAGATAAAGCCGAGAATGCAGAAATTGCATATAGTACAATGATTTTGTATCTTTCTGACAGTGTTCTTAGAAGGGTGAATGACATAGAAAGTGTTTCTGAACTTTGGACCAAACTTAATACCCTTTATATGTCAAAATCTCTCACAAATAAGGTTTACCTAAAACAAAGACTATTTGGTTATACAATGGACTCAGCTAAAAGACTAGAAGAAAATCTAGACGAATTTAACAAAATTTGTATGGAATTGACGAATACAGGGGAGAAAATCAGTGCTGAAAATCAAGCTGTTATCCTTTTGAACTCATTACCTGACAAGTATAAAGAGGTTAAAGCTACTATCAAATATGGGAGAGACTCATTAAGTTTGGATATTGTTCTTGATTCCTTAAGATCTAAAGAACTGGAAATTAAGGTAGAAAATAAAGATTCTGAAGCATTTTTCATTAAAAATAAACATACCAAGAACCACTCCAACAGGTTTGAAAAACATCAGTTCAAGAAGTCTCAAAAGGGAGGAAATAGTGCTAAGGAAAAAGAAAATATTACTTGTAATTACTGTCGTAAGGAAGAACATTTAAAGTATGATTTGTCTCATTTTAAAAAGAAAATGAAAGCTACTTGTTAAAGGAGAAAACAAACCTTCAGCAAATTTGTTAGAAGGATATGAATCCTGAAGTCTTAATGGTTTGATATTTGAATTGTACTGAGGAATGGATAATGGACTCTGGTTGTACTTTTCACATGACACCCCACAAACATTACTTCATGGAATTAAATGAATTTGATGCTGGAAATGTTGTAATGGGAAATAAACAGCAGTGTGAAGTTAAAGGCATAGGTTCTGTTAAACTGAAATTAAATGATGGTTCAACAAAGATTTTGTGCTCGGTTAGATATGTCCCTCGTTTGAAACGAAATTTGTTCTCCTTCGACACCATGGACAAAGCTAGTTTTGTGTATAAATCAGAAGGAGGGGTATTGTTAGTGTACAAAAATTCTGCTTTGAAAATGACAGGTACCTTAAAGAATGGTCTATACATACTATTTGGCAACACAATTTTAGGGGTTGTAAACATTGGTTTTGATGAAAATTTAAAAGTAACTAAATTATGGCATATGAGACTTGCACATATTAGTGAAAAATGACTTGTACAATTGAACAAGCAAGGTCTCCTTGGGAACATCAAGATAGGAGGATTGACATTTTGTGACCATTGTGTAATAGGAAAGGCTGCTAGACAAAACTTCAAACCATCCACCTTTAAGTCTAAAGGAAAATTAGACTATATGCACTCGGATCATTGGGGACCTTCAAGGATTATGACACATGGTGGGGCCAGGTACTTTCTTACTTTGATTGATGACTACTCTAGAAAATTATGGGTTTATCTACTCAAAACAAAGGATGAAACGTTTGAAAAGTTCAATGATGGAAAGTTTTAGTAGAAAATCAAACAGGCAAAAGGATAAAAGTACTCAGAACAGATAATGGTTTGAAATTTTTAAATGAAAAGTTCCATGACTTGTGCAAATCATCCGGCATTAGTAGACATCTTACAGTCCCAAGTACTCCATAACAAAACGGTCTGGCAGAAAGATTTAACAGAACGATTCTTGAAAGAGTAAGATGTATGCTCTCTAATGCCAAGTTACCAAAGGTCTTTTGGGGTTAGGCTGTCAACACAGCCACTTATATCATCAATAGAAGTCCTTCAACTGCTCTAAACTTCAAAACACCTCAAGAATTATGGTCACGTAAACCTCCAACTTTGAAACATATGAGAACTTTTGGATGTATTGCTTTTGCACATTTAAAACAACAGAAATTGGAACCTAGAGCTATAAAATGTATCTTTTTAGGTTACCAACAAGGAGTCAAATGATATAAACTGTGGTCCCTTGAACATGGAGTTAATAAGTGTTTTGTAAGCATAGACGTGATATTTGATGAGTCGTCAATGCCTTGGAAGGAGTCGAATACTACTCAAAATCAACCAGAAATTGGATCTTTTGAGATTGAACTCCAAAATATAGCTATTGAAAATAATCCAGATTTCCAAACGTCAGATCCTACACCTGATATAGAAGAGGCTACACTTACTATACCTTCAAACCAAGAAGTAGCCTCAACTTCAGAGGATGCTCATTCCAGTTATTAG

mRNA sequence

ATGTCAGCAAGATTTGAGTTAGAGAAATTTGACGGAAAAGGGGATTTCGGCCTTTGGAAGAAGAAGATGAAGGCGTTACTTGTGCAACAAAAGGTTGCCAAAGCCCTTGATTCAAGTAAGTATTCTGAATATGTATCTAAAGAAGATAAAGCCGAGAATGCAGAAATTGCATATAGTACAATGATTTTGTATCTTTCTGACAGTGTTCTTAGAAGGGTGAATGACATAGAAAGTGTTTCTGAACTTTGGACCAAACTTAATACCCTTTATATGTCAAAATCTCTCACAAATAAGGTTTACCTAAAACAAAGACTATTTGGTTATACAATGGACTCAGCTAAAAGACTAGAAGAAAATCTAGACGAATTTAACAAAATTTGTATGGAATTGACGAATACAGGGGAGAAAATCAGTGCTGAAAATCAAGCTGTTATCCTTTTGAACTCATTACCTGACAAGTATAAAGAGGTTAAAGCTACTATCAAATATGGGAGAGACTCATTAAGTTTGGATATTGTTCTTGATTCCTTAAGATCTAAAGAACTGGAAATTAAGTCGTCAATGCCTTGGAAGGAGTCGAATACTACTCAAAATCAACCAGAAATTGGATCTTTTGAGATTGAACTCCAAAATATAGCTATTGAAAATAATCCAGATTTCCAAACGTCAGATCCTACACCTGATATAGAAGAGGCTACACTTACTATACCTTCAAACCAAGAAGTAGCCTCAACTTCAGAGGATGCTCATTCCAGTTATTAG

Coding sequence (CDS)

ATGTCAGCAAGATTTGAGTTAGAGAAATTTGACGGAAAAGGGGATTTCGGCCTTTGGAAGAAGAAGATGAAGGCGTTACTTGTGCAACAAAAGGTTGCCAAAGCCCTTGATTCAAGTAAGTATTCTGAATATGTATCTAAAGAAGATAAAGCCGAGAATGCAGAAATTGCATATAGTACAATGATTTTGTATCTTTCTGACAGTGTTCTTAGAAGGGTGAATGACATAGAAAGTGTTTCTGAACTTTGGACCAAACTTAATACCCTTTATATGTCAAAATCTCTCACAAATAAGGTTTACCTAAAACAAAGACTATTTGGTTATACAATGGACTCAGCTAAAAGACTAGAAGAAAATCTAGACGAATTTAACAAAATTTGTATGGAATTGACGAATACAGGGGAGAAAATCAGTGCTGAAAATCAAGCTGTTATCCTTTTGAACTCATTACCTGACAAGTATAAAGAGGTTAAAGCTACTATCAAATATGGGAGAGACTCATTAAGTTTGGATATTGTTCTTGATTCCTTAAGATCTAAAGAACTGGAAATTAAGTCGTCAATGCCTTGGAAGGAGTCGAATACTACTCAAAATCAACCAGAAATTGGATCTTTTGAGATTGAACTCCAAAATATAGCTATTGAAAATAATCCAGATTTCCAAACGTCAGATCCTACACCTGATATAGAAGAGGCTACACTTACTATACCTTCAAACCAAGAAGTAGCCTCAACTTCAGAGGATGCTCATTCCAGTTATTAG

Protein sequence

MSARFELEKFDGKGDFGLWKKKMKALLVQQKVAKALDSSKYSEYVSKEDKAENAEIAYSTMILYLSDSVLRRVNDIESVSELWTKLNTLYMSKSLTNKVYLKQRLFGYTMDSAKRLEENLDEFNKICMELTNTGEKISAENQAVILLNSLPDKYKEVKATIKYGRDSLSLDIVLDSLRSKELEIKSSMPWKESNTTQNQPEIGSFEIELQNIAIENNPDFQTSDPTPDIEEATLTIPSNQEVASTSEDAHSSY

Homology

[Close]

BLAST of Moc02g16140 vs. NCBI nr
Match: KAA0050070.1 (putative polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 225.3 bits (573), Expect = 5.8e-55
Identity = 109/184 (59.24%), Postives = 147/184 (79.89%), Query Frame = 0


Query: 2   SARFELEKFDGKGDFGLWKKKMKALLVQQKVAKALDSSKYSEYVSKEDKAENAEIAYSTM 61
           S RFE+ KF+G GDF LW+KK++A+LVQ KVAK LD  +  E +++ +K +  E+ YST+
Sbjct: 3   STRFEVSKFNGNGDFALWRKKIRAILVQHKVAKILDEERLPENITESEKRDMDEMTYSTI 62

Query: 62  ILYLSDSVLRRVNDIESVSELWTKLNTLYMSKSLTNKVYLKQRLFGYTMDSAKRLEENLD 121
           +LYLSD VLR V++  ++ ELW KL +LYM KSL+NK+Y+K++ FGY MD +K LEENLD
Sbjct: 63  LLYLSDEVLRLVDEATTIGELWKKLESLYMKKSLSNKIYIKEKFFGYKMDQSKGLEENLD 122

Query: 122 EFNKICMELTNTGEKISAENQAVILLNSLPDKYKEVKATIKYGRDSLSLDIVLDSLRSKE 181
           EF KI ++L N GEK+S ENQAVILLNSLP+ Y+EVKA IKYGRDSL++ I+LD+L+++ 
Sbjct: 123 EFQKIIVDLNNIGEKMSDENQAVILLNSLPEIYREVKAAIKYGRDSLNMSIMLDALKTRN 182

Query: 182 LEIK 186
           LEIK
Sbjct: 183 LEIK 186

[Close]

BLAST of Moc02g16140 vs. NCBI nr
Match: TYK25306.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 224.9 bits (572), Expect = 7.6e-55
Identity = 109/184 (59.24%), Postives = 147/184 (79.89%), Query Frame = 0


Query: 2   SARFELEKFDGKGDFGLWKKKMKALLVQQKVAKALDSSKYSEYVSKEDKAENAEIAYSTM 61
           S RFE+ KF+G GDF LW+KK++A+LVQ KVAK LD  +  + +++ +K +  E+AYST+
Sbjct: 3   STRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYSTI 62

Query: 62  ILYLSDSVLRRVNDIESVSELWTKLNTLYMSKSLTNKVYLKQRLFGYTMDSAKRLEENLD 121
           +LYLSD VLR V++  +  ELW KL +LY++KSL NK+Y+K++ FGY MD +K LEENLD
Sbjct: 63  LLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIKEKFFGYKMDQSKSLEENLD 122

Query: 122 EFNKICMELTNTGEKISAENQAVILLNSLPDKYKEVKATIKYGRDSLSLDIVLDSLRSKE 181
           EF KI ++L N GEK+S ENQAVILLNSLP+ Y+EVKA IKYGRDSL++ IVLD+L+++ 
Sbjct: 123 EFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTRN 182

Query: 182 LEIK 186
           LEIK
Sbjct: 183 LEIK 186

[Close]

BLAST of Moc02g16140 vs. NCBI nr
Match: KAA0050719.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 224.9 bits (572), Expect = 7.6e-55
Identity = 109/184 (59.24%), Postives = 147/184 (79.89%), Query Frame = 0


Query: 2   SARFELEKFDGKGDFGLWKKKMKALLVQQKVAKALDSSKYSEYVSKEDKAENAEIAYSTM 61
           S RFE+ KF+G GDF LW+KK++A+LVQ KVAK LD  +  + +++ +K +  E+AYST+
Sbjct: 3   STRFEVSKFNGHGDFSLWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYSTI 62

Query: 62  ILYLSDSVLRRVNDIESVSELWTKLNTLYMSKSLTNKVYLKQRLFGYTMDSAKRLEENLD 121
           +LYLSD VLR V++  +  ELW KL +LY++KSL NK+Y+K++ FGY MD +K LEENLD
Sbjct: 63  LLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLLNKIYIKEKFFGYKMDQSKSLEENLD 122

Query: 122 EFNKICMELTNTGEKISAENQAVILLNSLPDKYKEVKATIKYGRDSLSLDIVLDSLRSKE 181
           EF KI ++L N GEK+S ENQAVILLNSLP+ Y+EVKA IKYGRDSL++ IVLD+L+++ 
Sbjct: 123 EFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTRN 182

Query: 182 LEIK 186
           LEIK
Sbjct: 183 LEIK 186

[Close]

BLAST of Moc02g16140 vs. NCBI nr
Match: TYK10340.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 221.1 bits (562), Expect = 1.1e-53
Identity = 106/184 (57.61%), Postives = 146/184 (79.35%), Query Frame = 0


Query: 2   SARFELEKFDGKGDFGLWKKKMKALLVQQKVAKALDSSKYSEYVSKEDKAENAEIAYSTM 61
           S R E+ KF+G GDF LW+KK++A+L+Q KVAK LD  +  E +++ +K +  E+ YST+
Sbjct: 3   STRSEVSKFNGNGDFALWRKKIRAILIQHKVAKILDEERLPENITESEKRDMDEMTYSTI 62

Query: 62  ILYLSDSVLRRVNDIESVSELWTKLNTLYMSKSLTNKVYLKQRLFGYTMDSAKRLEENLD 121
           +LYLSD VLR V++  ++ ELW KL +LY+ KSL+NK+Y+K++ FGY MD +K LEENLD
Sbjct: 63  LLYLSDEVLRLVDEATTIGELWKKLESLYLKKSLSNKIYIKEKFFGYKMDQSKSLEENLD 122

Query: 122 EFNKICMELTNTGEKISAENQAVILLNSLPDKYKEVKATIKYGRDSLSLDIVLDSLRSKE 181
           EF KI ++L N GEK+S ENQAVILLNSLP+ Y+EVKA IKYGRDSL++ I+LD+L+++ 
Sbjct: 123 EFQKIIVDLNNIGEKMSDENQAVILLNSLPEIYREVKAAIKYGRDSLNMSIMLDALKTRN 182

Query: 182 LEIK 186
           LEIK
Sbjct: 183 LEIK 186

[Close]

BLAST of Moc02g16140 vs. NCBI nr
Match: KAA0047995.1 (retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa])

HSP 1 Score: 218.4 bits (555), Expect = 7.1e-53
Identity = 107/184 (58.15%), Postives = 145/184 (78.80%), Query Frame = 0


Query: 2   SARFELEKFDGKGDFGLWKKKMKALLVQQKVAKALDSSKYSEYVSKEDKAENAEIAYSTM 61
           S RFE+ KF+G GDF LW+KK++A+LVQ KVAK LD  +  + +++ +K +  E+AY T+
Sbjct: 3   STRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYWTI 62

Query: 62  ILYLSDSVLRRVNDIESVSELWTKLNTLYMSKSLTNKVYLKQRLFGYTMDSAKRLEENLD 121
           +LYLSD VLR V++  +  ELW KL +LY++KSL NK+Y+K++ FGY MD +K LEENLD
Sbjct: 63  LLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIKEKFFGYKMDQSKILEENLD 122

Query: 122 EFNKICMELTNTGEKISAENQAVILLNSLPDKYKEVKATIKYGRDSLSLDIVLDSLRSKE 181
           EF KI ++L N GEK+S ENQAVILLNSLP+ Y+EVKA IKYG DSL++ IVLD+L+++ 
Sbjct: 123 EFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGWDSLTMSIVLDALKTRN 182

Query: 182 LEIK 186
           LEIK
Sbjct: 183 LEIK 186

[Close]

BLAST of Moc02g16140 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.8e-28
Identity = 69/179 (38.55%), Postives = 110/179 (61.45%), Query Frame = 0


Query: 4   RFELEKFDGKGDFGLWKKKMKALLVQQKVAKALD-SSKYSEYVSKEDKAENAEIAYSTMI 63
           ++E+ KF+G   F  W+++M+ LL+QQ + K LD  SK  + +  ED A+  E A S + 
Sbjct: 5   KYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAASAIR 64

Query: 64  LYLSDSVLRRVNDIESVSELWTKLNTLYMSKSLTNKVYLKQRLFGYTMDSAKRLEENLDE 123
           L+LSD V+  + D ++   +WT+L +LYMSK+LTNK+YLK++L+   M        +L+ 
Sbjct: 65  LHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHLNV 124

Query: 124 FNKICMELTNTGEKISAENQAVILLNSLPDKYKEVKATIKYGRDSLSLDIVLDSLRSKE 182
           FN +  +L N G KI  E++A++LLNSLP  Y  +  TI +G+ ++ L  V  +L   E
Sbjct: 125 FNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKTTIELKDVTSALLLNE 183

[Close]

BLAST of Moc02g16140 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 73.6 bits (179), Expect = 3.7e-12
Identity = 56/185 (30.27%), Postives = 97/185 (52.43%), Query Frame = 0


Query: 3   ARFELEKFDGKGDFGLWKKKMKALLVQQKVAKALDSSKYSEYVSKEDKAENAEIAYSTMI 62
           A+  ++ FDG+  + +WK +++ALL +Q V K +D    +E      KAE    A ST+I
Sbjct: 4   AKRNIKPFDGE-KYAIWKFRIRALLAEQDVLKVVDGLMPNEVDDSWKKAERC--AKSTII 63

Query: 63  LYLSDSVLRRVNDIESVSELWTKLNTLYMSKSLTNKVYLKQRLFGYTMDSAKRLEENLDE 122
            YLSDS L       +  ++   L+ +Y  KSL +++ L++RL    + S   L  +   
Sbjct: 64  EYLSDSFLNFATSDITARQILENLDAVYERKSLASQLALRKRLLSLKLSSEMSLLSHFHI 123

Query: 123 FNKICMELTNTGEKISAENQAVILLNSLPDKYKEVKATIK-YGRDSLSLDIVLDSLRSKE 182
           F+++  EL   G KI   ++   LL +LP  Y  +   I+    ++L+L  V + L  +E
Sbjct: 124 FDELISELLAAGAKIEEMDKISHLLITLPSCYDGIITAIETLSEENLTLAFVKNRLLDQE 183

Query: 183 LEIKS 187
           ++IK+
Sbjct: 184 IKIKN 185

[Close]

BLAST of Moc02g16140 vs. ExPASy TrEMBL
Match: A0A5A7U459 (Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00520 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 2.8e-55
Identity = 109/184 (59.24%), Postives = 147/184 (79.89%), Query Frame = 0


Query: 2   SARFELEKFDGKGDFGLWKKKMKALLVQQKVAKALDSSKYSEYVSKEDKAENAEIAYSTM 61
           S RFE+ KF+G GDF LW+KK++A+LVQ KVAK LD  +  E +++ +K +  E+ YST+
Sbjct: 3   STRFEVSKFNGNGDFALWRKKIRAILVQHKVAKILDEERLPENITESEKRDMDEMTYSTI 62

Query: 62  ILYLSDSVLRRVNDIESVSELWTKLNTLYMSKSLTNKVYLKQRLFGYTMDSAKRLEENLD 121
           +LYLSD VLR V++  ++ ELW KL +LYM KSL+NK+Y+K++ FGY MD +K LEENLD
Sbjct: 63  LLYLSDEVLRLVDEATTIGELWKKLESLYMKKSLSNKIYIKEKFFGYKMDQSKGLEENLD 122

Query: 122 EFNKICMELTNTGEKISAENQAVILLNSLPDKYKEVKATIKYGRDSLSLDIVLDSLRSKE 181
           EF KI ++L N GEK+S ENQAVILLNSLP+ Y+EVKA IKYGRDSL++ I+LD+L+++ 
Sbjct: 123 EFQKIIVDLNNIGEKMSDENQAVILLNSLPEIYREVKAAIKYGRDSLNMSIMLDALKTRN 182

Query: 182 LEIK 186
           LEIK
Sbjct: 183 LEIK 186

[Close]

BLAST of Moc02g16140 vs. ExPASy TrEMBL
Match: A0A5D3DNU1 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004440 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 3.7e-55
Identity = 109/184 (59.24%), Postives = 147/184 (79.89%), Query Frame = 0


Query: 2   SARFELEKFDGKGDFGLWKKKMKALLVQQKVAKALDSSKYSEYVSKEDKAENAEIAYSTM 61
           S RFE+ KF+G GDF LW+KK++A+LVQ KVAK LD  +  + +++ +K +  E+AYST+
Sbjct: 3   STRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYSTI 62

Query: 62  ILYLSDSVLRRVNDIESVSELWTKLNTLYMSKSLTNKVYLKQRLFGYTMDSAKRLEENLD 121
           +LYLSD VLR V++  +  ELW KL +LY++KSL NK+Y+K++ FGY MD +K LEENLD
Sbjct: 63  LLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIKEKFFGYKMDQSKSLEENLD 122

Query: 122 EFNKICMELTNTGEKISAENQAVILLNSLPDKYKEVKATIKYGRDSLSLDIVLDSLRSKE 181
           EF KI ++L N GEK+S ENQAVILLNSLP+ Y+EVKA IKYGRDSL++ IVLD+L+++ 
Sbjct: 123 EFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTRN 182

Query: 182 LEIK 186
           LEIK
Sbjct: 183 LEIK 186

[Close]

BLAST of Moc02g16140 vs. ExPASy TrEMBL
Match: A0A5A7UB25 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold560G00190 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 3.7e-55
Identity = 109/184 (59.24%), Postives = 147/184 (79.89%), Query Frame = 0


Query: 2   SARFELEKFDGKGDFGLWKKKMKALLVQQKVAKALDSSKYSEYVSKEDKAENAEIAYSTM 61
           S RFE+ KF+G GDF LW+KK++A+LVQ KVAK LD  +  + +++ +K +  E+AYST+
Sbjct: 3   STRFEVSKFNGHGDFSLWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYSTI 62

Query: 62  ILYLSDSVLRRVNDIESVSELWTKLNTLYMSKSLTNKVYLKQRLFGYTMDSAKRLEENLD 121
           +LYLSD VLR V++  +  ELW KL +LY++KSL NK+Y+K++ FGY MD +K LEENLD
Sbjct: 63  LLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLLNKIYIKEKFFGYKMDQSKSLEENLD 122

Query: 122 EFNKICMELTNTGEKISAENQAVILLNSLPDKYKEVKATIKYGRDSLSLDIVLDSLRSKE 181
           EF KI ++L N GEK+S ENQAVILLNSLP+ Y+EVKA IKYGRDSL++ IVLD+L+++ 
Sbjct: 123 EFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTRN 182

Query: 182 LEIK 186
           LEIK
Sbjct: 183 LEIK 186

[Close]

BLAST of Moc02g16140 vs. ExPASy TrEMBL
Match: A0A5D3CG50 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00150 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 5.3e-54
Identity = 106/184 (57.61%), Postives = 146/184 (79.35%), Query Frame = 0


Query: 2   SARFELEKFDGKGDFGLWKKKMKALLVQQKVAKALDSSKYSEYVSKEDKAENAEIAYSTM 61
           S R E+ KF+G GDF LW+KK++A+L+Q KVAK LD  +  E +++ +K +  E+ YST+
Sbjct: 3   STRSEVSKFNGNGDFALWRKKIRAILIQHKVAKILDEERLPENITESEKRDMDEMTYSTI 62

Query: 62  ILYLSDSVLRRVNDIESVSELWTKLNTLYMSKSLTNKVYLKQRLFGYTMDSAKRLEENLD 121
           +LYLSD VLR V++  ++ ELW KL +LY+ KSL+NK+Y+K++ FGY MD +K LEENLD
Sbjct: 63  LLYLSDEVLRLVDEATTIGELWKKLESLYLKKSLSNKIYIKEKFFGYKMDQSKSLEENLD 122

Query: 122 EFNKICMELTNTGEKISAENQAVILLNSLPDKYKEVKATIKYGRDSLSLDIVLDSLRSKE 181
           EF KI ++L N GEK+S ENQAVILLNSLP+ Y+EVKA IKYGRDSL++ I+LD+L+++ 
Sbjct: 123 EFQKIIVDLNNIGEKMSDENQAVILLNSLPEIYREVKAAIKYGRDSLNMSIMLDALKTRN 182

Query: 182 LEIK 186
           LEIK
Sbjct: 183 LEIK 186

[Close]

BLAST of Moc02g16140 vs. ExPASy TrEMBL
Match: A0A5A7U2U7 (Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00590 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 3.4e-53
Identity = 107/184 (58.15%), Postives = 145/184 (78.80%), Query Frame = 0


Query: 2   SARFELEKFDGKGDFGLWKKKMKALLVQQKVAKALDSSKYSEYVSKEDKAENAEIAYSTM 61
           S RFE+ KF+G GDF LW+KK++A+LVQ KVAK LD  +  + +++ +K +  E+AY T+
Sbjct: 3   STRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYWTI 62

Query: 62  ILYLSDSVLRRVNDIESVSELWTKLNTLYMSKSLTNKVYLKQRLFGYTMDSAKRLEENLD 121
           +LYLSD VLR V++  +  ELW KL +LY++KSL NK+Y+K++ FGY MD +K LEENLD
Sbjct: 63  LLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIKEKFFGYKMDQSKILEENLD 122

Query: 122 EFNKICMELTNTGEKISAENQAVILLNSLPDKYKEVKATIKYGRDSLSLDIVLDSLRSKE 181
           EF KI ++L N GEK+S ENQAVILLNSLP+ Y+EVKA IKYG DSL++ IVLD+L+++ 
Sbjct: 123 EFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGWDSLTMSIVLDALKTRN 182

Query: 182 LEIK 186
           LEIK
Sbjct: 183 LEIK 186

The following BLAST results are available for this feature:

BLAST of Moc02g16140 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050070.1	5.8e-55	59.24	putative polyprotein [Cucumis melo var. makuwa]	[more]
TYK25306.1	7.6e-55	59.24	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0050719.1	7.6e-55	59.24	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
TYK10340.1	1.1e-53	57.61	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0047995.1	7.1e-53	58.15	retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa...	[more]

BLAST of Moc02g16140 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	4.8e-28	38.55	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	3.7e-12	30.27	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]

BLAST of Moc02g16140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U459	2.8e-55	59.24	Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675...	[more]
A0A5D3DNU1	3.7e-55	59.24	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5A7UB25	3.7e-55	59.24	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A5D3CG50	5.3e-54	57.61	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7U2U7	3.4e-53	58.15	Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. maku...	[more]

BLAST of Moc02g16140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 113..133
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 52..181 e-value: 2.5E-29 score: 101.8
None	No IPR available	PANTHER	PTHR34676:SF6	SUBFAMILY NOT NAMED	coord: 1..157
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 1..157

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc02g16140.1	Moc02g16140.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016311	dephosphorylation
biological_process	GO:0015074	DNA integration
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0005986	sucrose biosynthetic process
molecular_function	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups
molecular_function	GO:0042393	histone binding
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0050307	sucrose-phosphate phosphatase activity
molecular_function	GO:0008270	zinc ion binding