Moc02g15890 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc02g15890
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Ribonuclease H
Location	chr2: 11968455 .. 11969182 (+)
RNA-Seq Expression	Moc02g15890
Synteny	Moc02g15890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGAGGCGATGGAGGAAGAAGGAACGTGGCACGACCAAGTTCCTTAAGCACGCTCGGCAGATGGGTCCGGAGTTGATAGGGCTTCGTGCAGAGCTCAACGAAGTTCGATCTGAGTTGGCCGGAGTTGTTCAGTTAAGGGTAGAGTTGCCAATTTGACTGCAGCTCTACGTCGCAGCCAAGTTCCAGAGGCAATAGCAAGAGACACGAATGCACCAGGGCCATCGGTCAGGGTCCGGGAAGTTGATGTGCAGGAAAATACTGCTGAGTCTCCGATTCCAAGGGACCCAGCGCGCGGAAAACCCCCGGTAGTGTCAGGGGAGGAAGATGCACTACCACGCGTGTCGGTCCATGAGCGACTAAAATTTAAGGGCAAGGCGAATCGCAATGATGGATCCAAGGGAAGGATTGCAGGTGCATATTACAGCGGAAGCCCTAGGCCTACATCAGACGTCAAATGAGCGTAATGTACCTCAGCAAGCTGGTCAGCAAACTCCAGCTACACCGAATTGGGGGTCTACCCCCGGAACAGGTGGGGCCAATTCGAACACAATTCAGCGGCCACCAGCCGCGGCGACTGCCACAACTTCGACATATCAGGCCACGGTTCATGTACCGAAGGTAAATGATTCCATGAAAGAGGTAATCAGTAAACTTCATAACGATTTTGAAGCTTTGAAGCAAAGCTGTAAGACTGATAATGCCAGTTGGGTAGAGCAGGGTGAATGA

mRNA sequence

ATGCGAGGCGATGGAGGAAGAAGGAACGTGGCACGACCAAGTTCCTTAAGCACGCTCGGCAGATGGGTCCGGACTCTACGTCGCAGCCAAGTTCCAGAGGCAATAGCAAGAGACACGAATGCACCAGGGCCATCGGTCAGGGTCCGGGAAGTTGATGTGCAGGAAAATACTGCTGAGTCTCCGATTCCAAGGGACCCAGCGCGCGGAAAACCCCCGGTAGTGTCAGGGGAGGAAGATGCACTACCACGCGTGTCGGTCCATGAGCGACTAAAATTTAAGGGCAAGGCGAATCGCAATGATGGATCCAAGGGAAGGATTGCAGCTACACCGAATTGGGGGTCTACCCCCGGAACAGGTGGGGCCAATTCGAACACAATTCAGCGGCCACCAGCCGCGGCGACTGCCACAACTTCGACATATCAGGCCACGGTTCATGTACCGAAGGTAAATGATTCCATGAAAGAGGTAATCAGTAAACTTCATAACGATTTTGAAGCTTTGAAGCAAAGCTGTAAGACTGATAATGCCAGTTGGGTAGAGCAGGGTGAATGA

Coding sequence (CDS)

ATGCGAGGCGATGGAGGAAGAAGGAACGTGGCACGACCAAGTTCCTTAAGCACGCTCGGCAGATGGGTCCGGACTCTACGTCGCAGCCAAGTTCCAGAGGCAATAGCAAGAGACACGAATGCACCAGGGCCATCGGTCAGGGTCCGGGAAGTTGATGTGCAGGAAAATACTGCTGAGTCTCCGATTCCAAGGGACCCAGCGCGCGGAAAACCCCCGGTAGTGTCAGGGGAGGAAGATGCACTACCACGCGTGTCGGTCCATGAGCGACTAAAATTTAAGGGCAAGGCGAATCGCAATGATGGATCCAAGGGAAGGATTGCAGCTACACCGAATTGGGGGTCTACCCCCGGAACAGGTGGGGCCAATTCGAACACAATTCAGCGGCCACCAGCCGCGGCGACTGCCACAACTTCGACATATCAGGCCACGGTTCATGTACCGAAGGTAAATGATTCCATGAAAGAGGTAATCAGTAAACTTCATAACGATTTTGAAGCTTTGAAGCAAAGCTGTAAGACTGATAATGCCAGTTGGGTAGAGCAGGGTGAATGA

Protein sequence

MRGDGGRRNVARPSSLSTLGRWVRTLRRSQVPEAIARDTNAPGPSVRVREVDVQENTAESPIPRDPARGKPPVVSGEEDALPRVSVHERLKFKGKANRNDGSKGRIAATPNWGSTPGTGGANSNTIQRPPAAATATTSTYQATVHVPKVNDSMKEVISKLHNDFEALKQSCKTDNASWVEQGE

Homology

[Close]

BLAST of Moc02g15890 vs. NCBI nr
Match: XP_022158520.1 (uncharacterized protein LOC111024991 [Momordica charantia])

HSP 1 Score: 113.2 bits (282), Expect = 2.3e-21
Identity = 71/153 (46.41%), Postives = 86/153 (56.21%), Query Frame = 0


Query: 36  ARDTNAPGPSVRVREVDVQENTAESPIPRDPARGKPPVVSGEEDALPRVSVHERLKFKGK 95
           A D +APGPS+R+RE DV E+TAES +PRDPA GK P +S EED  P+V V E L  + +
Sbjct: 441 AGDVHAPGPSIRIREADVHEHTAESLVPRDPAHGKAPTISEEEDVPPQVPVRELLNLRAR 500

Query: 96  ----------------------------ANRNDGSKGRIAATPNWGSTPGTGGANSNTIQ 155
                                        N +  +  +   T N GSTP T G NSNT+Q
Sbjct: 501 QTATIDPREGLRVHITTEAPDLRQMLEERNVSQQAGQQTPVTLNLGSTPMTRGVNSNTVQ 560

Query: 156 RPPAAATATTSTYQATVHVPKVNDSMKEVISKL 161
           +P A A ATTSTY  TV VP+V DSMKEVI KL
Sbjct: 561 QPHAEAAATTSTYPTTVDVPEVQDSMKEVIIKL 593

[Close]

BLAST of Moc02g15890 vs. ExPASy TrEMBL
Match: A0A6J1DW30 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024991 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.1e-21
Identity = 71/153 (46.41%), Postives = 86/153 (56.21%), Query Frame = 0


Query: 36  ARDTNAPGPSVRVREVDVQENTAESPIPRDPARGKPPVVSGEEDALPRVSVHERLKFKGK 95
           A D +APGPS+R+RE DV E+TAES +PRDPA GK P +S EED  P+V V E L  + +
Sbjct: 441 AGDVHAPGPSIRIREADVHEHTAESLVPRDPAHGKAPTISEEEDVPPQVPVRELLNLRAR 500

Query: 96  ----------------------------ANRNDGSKGRIAATPNWGSTPGTGGANSNTIQ 155
                                        N +  +  +   T N GSTP T G NSNT+Q
Sbjct: 501 QTATIDPREGLRVHITTEAPDLRQMLEERNVSQQAGQQTPVTLNLGSTPMTRGVNSNTVQ 560

Query: 156 RPPAAATATTSTYQATVHVPKVNDSMKEVISKL 161
           +P A A ATTSTY  TV VP+V DSMKEVI KL
Sbjct: 561 QPHAEAAATTSTYPTTVDVPEVQDSMKEVIIKL 593

The following BLAST results are available for this feature:

BLAST of Moc02g15890 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158520.1	2.3e-21	46.41	uncharacterized protein LOC111024991 [Momordica charantia]	[more]

BLAST of Moc02g15890 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc02g15890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DW30	1.1e-21	46.41	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024991 PE=4 SV=1	[more]

BLAST of Moc02g15890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 108..139
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..139
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc02g15890.1	Moc02g15890.1	mRNA