Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACAGCACAATTCCCAATCAAAGTAGCGGAAATACATTTAGAGTGAAGAAGTCACTGGAAAGAATTGAGGTGACTATTGGAAAGTTACCAGCAACTCCAAGATTCATCCACCAGAATCGAGAGGTTTGGTCTTACAATCTCTGCAAAGAGTTACAGCTGCTGAATGAGTATCTTCTAGAGTTTCAGCAGTCGTCATTGATACAGAGTTTTCAGGTATTGAGTTTCTTAAATCAGGTGGATAATCGAAACTATTTTTTAAGTTTAGCTAGAAAAGGTTTTGACGCTCTTGAGCTCGATCGATGAACCAGAATTTCTTTGATACACTCCGAAAGGTGTTTAGAGGAAGAATTCTATGATTGTCACTGATTCAACGTGAACCGATTGAACACACTCCAACTTGATCTCACACTAGTCGATCAAAATGGACATGTAGTGATGATTTGGAAATTTCATTTTAGAGATTTTGATCACATTAGCGTCATAGAATGCGTTTCTTCACTAGATCCGTTTATGAAGAACAAGGGATTCGATTTCTACAAATTGAAGAAAGACAGAATAGCTACAGAGGATTTCACTGCCATGTTTCTACCGATTTGTCGTAGTGGTAGAATCGAGAGATGGATCACATTTCATGACTTCTACGACATCGCTTATCTTTTGAAGCTGCTCAAAATCAAATCCATACAATTTCTATGGCAACGTTTGTTGTCATAGCTCAGCATCTATTAGGTACTAATGAATCGTCAATCAATTTAAAAGCTTAATTTGATATATTATGGTAAATTTAATATGTTATATTAACTTAATAGGTACTATCAGCGATTTGAAGCATATAGCTCGCTATTGCGATGGATTGCTCGATTGCGACCTAAGGCTAAAAAATTTTGTCAAGCTCCTCGACGGGAAACAAATAAGCATAACACATTCACCGATTCTGATAGTTTACTCACAACTGCAGTATCCACCAAGATGAAGCAAATGTTCAACCTTCCGGTAGAGCAATGTGAAGGGTTTCTCTACGGCTTACCTTACCGGATTCAAGCTTTTCAGCCAATCATGAAGATCATCGATCCGTCCGCCACGACTCCTCCATGTCTGCAACCAAAGTGCTTGATGTTGTCTTTTTGCAGCTTGCCACTGTTTTTCATTGATACTCGATCTAGTAGGTTAATGGTCATTTGTTGA
mRNA sequence
ATGAACAGCACAATTCCCAATCAAAGTAGCGGAAATACATTTAGAGTGAAGAAGTCACTGGAAAGAATTGAGGTGACTATTGGAAAGTTACCAGCAACTCCAAGATTCATCCACCAGAATCGAGAGGTTTGGTCTTACAATCTCTGCAAAGAGTTACAGCTGCTGAATGAGTATCTTCTAGAGTTTCAGCAGTCGTCATTGATACAGAGTTTTCAGAACAAGGGATTCGATTTCTACAAATTGAAGAAAGACAGAATAGCTACAGAGGATTTCACTGCCATCTGCTCAAAATCAAATCCATACAATTTCTATGGCAACGTTTGTTGTCATAGCTCAGCATCTATTAGGTACTATCAGCGATTTGAAGCATATAGCTCGCTATTGCGATGGATTGCTCGATTGCGACCTAAGGCTAAAAAATTTTGTCAAGCTCCTCGACGGGAAACAAATAAGCATAACACATTCACCGATTCTGATAGTTTACTCACAACTGCAGTATCCACCAAGATGAAGCAAATGTTCAACCTTCCGGTAGAGCAATGTGAAGGGTTTCTCTACGGCTTACCTTACCGGATTCAAGCTTTTCAGCCAATCATGAAGATCATCGATCCGTCCGCCACGACTCCTCCATGTCTGCAACCAAAGTGCTTGATGTTGTCTTTTTGCAGCTTGCCACTGTTTTTCATTGATACTCGATCTAGTAGGTTAATGGTCATTTGTTGA
Coding sequence (CDS)
ATGAACAGCACAATTCCCAATCAAAGTAGCGGAAATACATTTAGAGTGAAGAAGTCACTGGAAAGAATTGAGGTGACTATTGGAAAGTTACCAGCAACTCCAAGATTCATCCACCAGAATCGAGAGGTTTGGTCTTACAATCTCTGCAAAGAGTTACAGCTGCTGAATGAGTATCTTCTAGAGTTTCAGCAGTCGTCATTGATACAGAGTTTTCAGAACAAGGGATTCGATTTCTACAAATTGAAGAAAGACAGAATAGCTACAGAGGATTTCACTGCCATCTGCTCAAAATCAAATCCATACAATTTCTATGGCAACGTTTGTTGTCATAGCTCAGCATCTATTAGGTACTATCAGCGATTTGAAGCATATAGCTCGCTATTGCGATGGATTGCTCGATTGCGACCTAAGGCTAAAAAATTTTGTCAAGCTCCTCGACGGGAAACAAATAAGCATAACACATTCACCGATTCTGATAGTTTACTCACAACTGCAGTATCCACCAAGATGAAGCAAATGTTCAACCTTCCGGTAGAGCAATGTGAAGGGTTTCTCTACGGCTTACCTTACCGGATTCAAGCTTTTCAGCCAATCATGAAGATCATCGATCCGTCCGCCACGACTCCTCCATGTCTGCAACCAAAGTGCTTGATGTTGTCTTTTTGCAGCTTGCCACTGTTTTTCATTGATACTCGATCTAGTAGGTTAATGGTCATTTGTTGA
Protein sequence
MNSTIPNQSSGNTFRVKKSLERIEVTIGKLPATPRFIHQNREVWSYNLCKELQLLNEYLLEFQQSSLIQSFQNKGFDFYKLKKDRIATEDFTAICSKSNPYNFYGNVCCHSSASIRYYQRFEAYSSLLRWIARLRPKAKKFCQAPRRETNKHNTFTDSDSLLTTAVSTKMKQMFNLPVEQCEGFLYGLPYRIQAFQPIMKIIDPSATTPPCLQPKCLMLSFCSLPLFFIDTRSSRLMVIC
Homology
BLAST of Moc02g15610 vs. NCBI nr
Match:
XP_022154798.1 (probable CCR4-associated factor 1 homolog 6 [Momordica charantia])
HSP 1 Score: 137.5 bits (345), Expect = 1.5e-28
Identity = 118/341 (34.60%), Postives = 138/341 (40.47%), Query Frame = 0
Query: 23 IEVTIGKLPATPRFIHQNREVWSYNLCKELQLLNEYLLEFQ------------------- 82
+E T GK P PR +HQNREVWSYNL KEL++LNEYL EF
Sbjct: 1 MEKTFGKSPTAPRSVHQNREVWSYNLHKELEILNEYLPEFPIVAIDTEFPGIGLLKDNRI 60
Query: 83 ------------------------------------------------------------ 142
Sbjct: 61 YFLSLAGKYFYARKLDDEPGFLRYTPKGVSEEEFYDCLRFNVNRLNILQLGLTLANQNGN 120
Query: 143 --------------------QSSLIQSFQNKGFDFYKLKKDRIATEDFTA----ICSKSN 202
SSL +NKGFDFYKLK+D IA EDFT IC
Sbjct: 121 VAMTWEFNFRDFDHISDMEGVSSLDSFLKNKGFDFYKLKRDGIALEDFTTLFLPICRSGR 180
Query: 203 P------YNFYGNVCCHSSASIRY----YQRFEAYSS-LLRWIARLRPKA---------- 237
+ FY I+Y F A + LL ++ L+
Sbjct: 181 IERWITFHGFYDIAYLLKLLKIKYIPISMATFAATAQHLLGTVSDLKHMCRYCDGLLDGD 240
BLAST of Moc02g15610 vs. NCBI nr
Match:
XP_022146384.1 (putative CCR4-associated factor 1 homolog 8 [Momordica charantia])
HSP 1 Score: 132.1 bits (331), Expect = 6.4e-27
Identity = 115/336 (34.23%), Postives = 141/336 (41.96%), Query Frame = 0
Query: 7 NQSSGNTFRVKKSLERIE-VTIGKLPATPRFIHQNREVWSYNLCKELQLLNEYLLEF--- 66
++ + N FRV KSLE +E + K A PR I NREVWS NL +EL+LLNEYL EF
Sbjct: 3 DKRNDNIFRVMKSLENMEKAIVRKSTAAPRSICHNREVWSLNLREELELLNEYLPEFPVV 62
Query: 67 ------------------------------------------------------------ 126
Sbjct: 63 VIDMEFPGFLWCTPKGISEEEFYHCLRFNVNRLNILQLGLTLADQKGNIAMTWEFNFRDF 122
Query: 127 -------QQSSLIQSFQNKGFDFYKLKKDRIATEDFTA----ICSKSNPYNFYGNVCCHS 186
SSL +NKGFDFYKLKK IA EDFT IC + + H
Sbjct: 123 DHVSDMEDVSSLDSFLKNKGFDFYKLKKYGIAQEDFTTLFLPICRSGQIKRW---ITFHG 182
Query: 187 SASIRYYQRFEAYSS--------------LLRWIARLRPKAKKFCQA------------- 237
I Y + S LL ++ L+ A ++C
Sbjct: 183 FYDITYLLKLLKIKSIPISMATFATTAQHLLGTVSDLKHMA-RYCDGLLDGNLGLKKLAK 242
BLAST of Moc02g15610 vs. NCBI nr
Match:
XP_022153955.1 (putative CCR4-associated factor 1 homolog 8 [Momordica charantia])
HSP 1 Score: 112.8 bits (281), Expect = 4.0e-21
Identity = 92/274 (33.58%), Postives = 120/274 (43.80%), Query Frame = 0
Query: 23 IEVTIGKLPATPRFIHQNREVWSYNLCKELQLLNEYLLEF-------------------- 82
+E TI PR + + +EVWS+NL +EL+LLNEY+ EF
Sbjct: 1 MEKTIRNSMPAPRSVRKKQEVWSHNLHEELELLNEYIPEFLVVTIDIGWYFGRKILRLSP 60
Query: 83 -QQSSLIQ-------------------------------------SFQNKGFDFYKLKKD 142
Q+ +++Q +N GFDFYKLKKD
Sbjct: 61 IQRLNILQLGLTLVDQKENVAMTLEFNFRDFDHISDMKGISLLDLFLKNNGFDFYKLKKD 120
Query: 143 RIATEDFTA----ICSKSNP------YNFYGNVCCHSSASIRYYQRFEA-----YSSLLR 202
I E+FT IC + FY I++ F A LL
Sbjct: 121 GIVPENFTTLFLPICHSGRIERLITFHGFYEIAYLLKRLKIKFIPIFMATFAATAQHLLG 180
Query: 203 WIARLRPKA-------------KKFCQAPRRETNKHNTFTDSDSLLTTAVSTKMKQMFNL 211
I+ L+ A KKF + + F DSLLT ++ TKMKQMF L
Sbjct: 181 AISNLKHMARYCDGLLDGNLALKKFAKLLDVKRIGTAHFAGFDSLLTASIYTKMKQMFKL 240
BLAST of Moc02g15610 vs. NCBI nr
Match:
XP_038888808.1 (probable CCR4-associated factor 1 homolog 6 [Benincasa hispida])
HSP 1 Score: 60.8 bits (146), Expect = 1.8e-05
Identity = 35/77 (45.45%), Postives = 48/77 (62.34%), Query Frame = 0
Query: 155 FTDSDSLLTTAVSTKMKQMFNLPVEQCEGFLYGLPYRIQAFQPIMKIIDPSATTPPCLQP 214
F SDSLLT +V KMK +F LP + EG LYGLP+ I+AF+ + I+ PS ++
Sbjct: 138 FAGSDSLLTASVYAKMKTIFKLPEQLSEGILYGLPHPIRAFRQPVTIVSPSPSS------ 197
Query: 215 KCLMLSFC-SLPLFFID 231
+CL+ SF S P+F D
Sbjct: 198 RCLVSSFSRSSPIFIGD 208
BLAST of Moc02g15610 vs. NCBI nr
Match:
XP_022928830.1 (putative CCR4-associated factor 1 homolog 8 [Cucurbita moschata])
HSP 1 Score: 59.7 bits (143), Expect = 4.0e-05
Identity = 51/174 (29.31%), Postives = 71/174 (40.80%), Query Frame = 0
Query: 66 SLIQSFQNKGFDFYKLKKDRIATEDFTA-------------------------------I 125
SL +NKGF+F KL+ IA ++F+ I
Sbjct: 112 SLDSFLKNKGFNFNKLRSCGIAPQEFSRQFKPVIRSGRIQKWITFHGLYDIAYLMKFNNI 171
Query: 126 CSKSNPYNFYGNVCCHSSASIRYYQRFEAYSSLLRWIARLRPKAKKFCQAPRRETNKHNT 185
S + + + H ++ + YS L K K Q R T
Sbjct: 172 ISMPTSMSMFAMIAAHLLGTVTDLKHMARYSDYLFNGNLGLKKLAKLLQINRVGTAH--- 231
Query: 186 FTDSDSLLTTAVSTKMKQMFNLPVEQCEGFLYGLPYRIQAFQPIMKIIDPSATT 209
F SDSLLT +V KMK + + + EGFLYGLPY IQ ++P + I+DPS T
Sbjct: 232 FAGSDSLLTASVYAKMKVIMKVEPKIHEGFLYGLPYPIQGYRPPVVIVDPSKLT 282
BLAST of Moc02g15610 vs. ExPASy TrEMBL
Match:
A0A6J1DLA5 (Poly(A)-specific ribonuclease OS=Momordica charantia OX=3673 GN=LOC111021965 PE=3 SV=1)
HSP 1 Score: 137.5 bits (345), Expect = 7.3e-29
Identity = 118/341 (34.60%), Postives = 138/341 (40.47%), Query Frame = 0
Query: 23 IEVTIGKLPATPRFIHQNREVWSYNLCKELQLLNEYLLEFQ------------------- 82
+E T GK P PR +HQNREVWSYNL KEL++LNEYL EF
Sbjct: 1 MEKTFGKSPTAPRSVHQNREVWSYNLHKELEILNEYLPEFPIVAIDTEFPGIGLLKDNRI 60
Query: 83 ------------------------------------------------------------ 142
Sbjct: 61 YFLSLAGKYFYARKLDDEPGFLRYTPKGVSEEEFYDCLRFNVNRLNILQLGLTLANQNGN 120
Query: 143 --------------------QSSLIQSFQNKGFDFYKLKKDRIATEDFTA----ICSKSN 202
SSL +NKGFDFYKLK+D IA EDFT IC
Sbjct: 121 VAMTWEFNFRDFDHISDMEGVSSLDSFLKNKGFDFYKLKRDGIALEDFTTLFLPICRSGR 180
Query: 203 P------YNFYGNVCCHSSASIRY----YQRFEAYSS-LLRWIARLRPKA---------- 237
+ FY I+Y F A + LL ++ L+
Sbjct: 181 IERWITFHGFYDIAYLLKLLKIKYIPISMATFAATAQHLLGTVSDLKHMCRYCDGLLDGD 240
BLAST of Moc02g15610 vs. ExPASy TrEMBL
Match:
A0A6J1CXZ5 (Poly(A)-specific ribonuclease OS=Momordica charantia OX=3673 GN=LOC111015612 PE=3 SV=1)
HSP 1 Score: 132.1 bits (331), Expect = 3.1e-27
Identity = 115/336 (34.23%), Postives = 141/336 (41.96%), Query Frame = 0
Query: 7 NQSSGNTFRVKKSLERIE-VTIGKLPATPRFIHQNREVWSYNLCKELQLLNEYLLEF--- 66
++ + N FRV KSLE +E + K A PR I NREVWS NL +EL+LLNEYL EF
Sbjct: 3 DKRNDNIFRVMKSLENMEKAIVRKSTAAPRSICHNREVWSLNLREELELLNEYLPEFPVV 62
Query: 67 ------------------------------------------------------------ 126
Sbjct: 63 VIDMEFPGFLWCTPKGISEEEFYHCLRFNVNRLNILQLGLTLADQKGNIAMTWEFNFRDF 122
Query: 127 -------QQSSLIQSFQNKGFDFYKLKKDRIATEDFTA----ICSKSNPYNFYGNVCCHS 186
SSL +NKGFDFYKLKK IA EDFT IC + + H
Sbjct: 123 DHVSDMEDVSSLDSFLKNKGFDFYKLKKYGIAQEDFTTLFLPICRSGQIKRW---ITFHG 182
Query: 187 SASIRYYQRFEAYSS--------------LLRWIARLRPKAKKFCQA------------- 237
I Y + S LL ++ L+ A ++C
Sbjct: 183 FYDITYLLKLLKIKSIPISMATFATTAQHLLGTVSDLKHMA-RYCDGLLDGNLGLKKLAK 242
BLAST of Moc02g15610 vs. ExPASy TrEMBL
Match:
A0A6J1DIB1 (putative CCR4-associated factor 1 homolog 8 OS=Momordica charantia OX=3673 GN=LOC111021342 PE=4 SV=1)
HSP 1 Score: 112.8 bits (281), Expect = 1.9e-21
Identity = 92/274 (33.58%), Postives = 120/274 (43.80%), Query Frame = 0
Query: 23 IEVTIGKLPATPRFIHQNREVWSYNLCKELQLLNEYLLEF-------------------- 82
+E TI PR + + +EVWS+NL +EL+LLNEY+ EF
Sbjct: 1 MEKTIRNSMPAPRSVRKKQEVWSHNLHEELELLNEYIPEFLVVTIDIGWYFGRKILRLSP 60
Query: 83 -QQSSLIQ-------------------------------------SFQNKGFDFYKLKKD 142
Q+ +++Q +N GFDFYKLKKD
Sbjct: 61 IQRLNILQLGLTLVDQKENVAMTLEFNFRDFDHISDMKGISLLDLFLKNNGFDFYKLKKD 120
Query: 143 RIATEDFTA----ICSKSNP------YNFYGNVCCHSSASIRYYQRFEA-----YSSLLR 202
I E+FT IC + FY I++ F A LL
Sbjct: 121 GIVPENFTTLFLPICHSGRIERLITFHGFYEIAYLLKRLKIKFIPIFMATFAATAQHLLG 180
Query: 203 WIARLRPKA-------------KKFCQAPRRETNKHNTFTDSDSLLTTAVSTKMKQMFNL 211
I+ L+ A KKF + + F DSLLT ++ TKMKQMF L
Sbjct: 181 AISNLKHMARYCDGLLDGNLALKKFAKLLDVKRIGTAHFAGFDSLLTASIYTKMKQMFKL 240
BLAST of Moc02g15610 vs. ExPASy TrEMBL
Match:
A0A6J1ESM7 (Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111435626 PE=3 SV=1)
HSP 1 Score: 59.7 bits (143), Expect = 1.9e-05
Identity = 51/174 (29.31%), Postives = 71/174 (40.80%), Query Frame = 0
Query: 66 SLIQSFQNKGFDFYKLKKDRIATEDFTA-------------------------------I 125
SL +NKGF+F KL+ IA ++F+ I
Sbjct: 112 SLDSFLKNKGFNFNKLRSCGIAPQEFSRQFKPVIRSGRIQKWITFHGLYDIAYLMKFNNI 171
Query: 126 CSKSNPYNFYGNVCCHSSASIRYYQRFEAYSSLLRWIARLRPKAKKFCQAPRRETNKHNT 185
S + + + H ++ + YS L K K Q R T
Sbjct: 172 ISMPTSMSMFAMIAAHLLGTVTDLKHMARYSDYLFNGNLGLKKLAKLLQINRVGTAH--- 231
Query: 186 FTDSDSLLTTAVSTKMKQMFNLPVEQCEGFLYGLPYRIQAFQPIMKIIDPSATT 209
F SDSLLT +V KMK + + + EGFLYGLPY IQ ++P + I+DPS T
Sbjct: 232 FAGSDSLLTASVYAKMKVIMKVEPKIHEGFLYGLPYPIQGYRPPVVIVDPSKLT 282
BLAST of Moc02g15610 vs. ExPASy TrEMBL
Match:
A0A6J1IIN1 (Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111474351 PE=3 SV=1)
HSP 1 Score: 55.1 bits (131), Expect = 4.8e-04
Identity = 39/120 (32.50%), Postives = 58/120 (48.33%), Query Frame = 0
Query: 91 FTAICSKSNPYNFYGNVCCHSSASIRYYQRFEAYSS-LLRWIARLRPKAKKFCQAPRRET 150
FT+I + + + H ++ + YS LL L+ AK +
Sbjct: 168 FTSIICMPTSMSIFAIMAAHLLGTVTDLKHMARYSDYLLNGNLGLKKLAKML------QV 227
Query: 151 NKHNT--FTDSDSLLTTAVSTKMKQMFNLPVEQCEGFLYGLPYRIQAFQPIMKIIDPSAT 208
N+ T F SDSLLT +V KM+ + + + EGFLYGLPY IQ ++P + I+DP T
Sbjct: 228 NRIGTAHFAGSDSLLTASVYAKMRVIMKVDPKIHEGFLYGLPYPIQGYRPPVVIVDPKLT 281
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022154798.1 | 1.5e-28 | 34.60 | probable CCR4-associated factor 1 homolog 6 [Momordica charantia] | [more] |
XP_022146384.1 | 6.4e-27 | 34.23 | putative CCR4-associated factor 1 homolog 8 [Momordica charantia] | [more] |
XP_022153955.1 | 4.0e-21 | 33.58 | putative CCR4-associated factor 1 homolog 8 [Momordica charantia] | [more] |
XP_038888808.1 | 1.8e-05 | 45.45 | probable CCR4-associated factor 1 homolog 6 [Benincasa hispida] | [more] |
XP_022928830.1 | 4.0e-05 | 29.31 | putative CCR4-associated factor 1 homolog 8 [Cucurbita moschata] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1DLA5 | 7.3e-29 | 34.60 | Poly(A)-specific ribonuclease OS=Momordica charantia OX=3673 GN=LOC111021965 PE=... | [more] |
A0A6J1CXZ5 | 3.1e-27 | 34.23 | Poly(A)-specific ribonuclease OS=Momordica charantia OX=3673 GN=LOC111015612 PE=... | [more] |
A0A6J1DIB1 | 1.9e-21 | 33.58 | putative CCR4-associated factor 1 homolog 8 OS=Momordica charantia OX=3673 GN=LO... | [more] |
A0A6J1ESM7 | 1.9e-05 | 29.31 | Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111435626 PE=3... | [more] |
A0A6J1IIN1 | 4.8e-04 | 32.50 | Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111474351 PE=3 S... | [more] |
Match Name | E-value | Identity | Description | |