Moc02g15060 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc02g15060
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Unknown protein
Location	chr2: 11162139 .. 11162657 (+)
RNA-Seq Expression	Moc02g15060
Synteny	Moc02g15060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGACAAGGACTCTGATGGACGAACTCGGTCTACTGTAGCTAGCTTACAAGGGCAGGAATGGTATCACGATCTATTGGACCCTACTGTCCAATTGAAGGACGAAGTAAGTACCTTTTATTCCACTATCTAGTACTACATTTGTCAATAATATGATTATATCAACTTGCATTTCTTAAATGCAATAGGTAGTTGATGCTCCCGTCCTATTTACGGCAAAAAATTTGGAGAAGTGTCTACATCTGTGTCGCAAAAGTGCGATAGGCGACATGCTACTTTCGGTACATACTTTTTACCGCTCTTCGTTTGGACTAAAAAATACTATTTTAATTGTCTGTGTAACTAATATCAATTTTCATTTCTTGTACAGACTCTGCTGAACCGAGCAGACGATCCGTATGCGGCCATGAACCCAGGTGTCCTGTCCATGAGAATCGAATACCCTTGGAGCCAGGAGAATACCATATTTCGATATGTCTTCGGTAGGGCAGTCGGACCAGAATGTGGCTTGGACTGA

mRNA sequence

ATGGATGACAAGGACTCTGATGGACGAACTCGGTCTACTGTAGCTAGCTTACAAGGGCAGGAATGGTATCACGATCTATTGGACCCTACTGTCCAATTGAAGGACGAAGTAGTTGATGCTCCCGTCCTATTTACGGCAAAAAATTTGGAGAAGTGTCTACATCTGTGTCGCAAAAGTGCGATAGGCGACATGCTACTTTCGACTCTGCTGAACCGAGCAGACGATCCGTATGCGGCCATGAACCCAGGTGTCCTGTCCATGAGAATCGAATACCCTTGGAGCCAGGAGAATACCATATTTCGATATGTCTTCGGTAGGGCAGTCGGACCAGAATGTGGCTTGGACTGA

Coding sequence (CDS)

ATGGATGACAAGGACTCTGATGGACGAACTCGGTCTACTGTAGCTAGCTTACAAGGGCAGGAATGGTATCACGATCTATTGGACCCTACTGTCCAATTGAAGGACGAAGTAGTTGATGCTCCCGTCCTATTTACGGCAAAAAATTTGGAGAAGTGTCTACATCTGTGTCGCAAAAGTGCGATAGGCGACATGCTACTTTCGACTCTGCTGAACCGAGCAGACGATCCGTATGCGGCCATGAACCCAGGTGTCCTGTCCATGAGAATCGAATACCCTTGGAGCCAGGAGAATACCATATTTCGATATGTCTTCGGTAGGGCAGTCGGACCAGAATGTGGCTTGGACTGA

Protein sequence

MDDKDSDGRTRSTVASLQGQEWYHDLLDPTVQLKDEVVDAPVLFTAKNLEKCLHLCRKSAIGDMLLSTLLNRADDPYAAMNPGVLSMRIEYPWSQENTIFRYVFGRAVGPECGLD

Homology

[Close]

BLAST of Moc02g15060 vs. NCBI nr
Match: XP_022155476.1 (uncharacterized protein LOC111022607 [Momordica charantia])

HSP 1 Score: 179.1 bits (453), Expect = 2.2e-41
Identity = 89/107 (83.18%), Postives = 93/107 (86.92%), Query Frame = 0


Query: 1   MDDKDSDGRTRSTVASLQGQEWYHDLLDPTVQLKDEVVDAPVLFTAKNLEKCLHLCRKS- 60
           MDD D DGRTRST A LQG+EWY DLLDPTVQLKDEVVDA VLFTAK LEKC++LCRK  
Sbjct: 167 MDDLDIDGRTRSTAAGLQGKEWYRDLLDPTVQLKDEVVDALVLFTAKKLEKCIYLCRKKF 226

Query: 61  AIGDMLLSTLLNRADDPYAAMNPGVLSMRIEYPWSQENTIFRYVFGR 107
           AIGD+LLSTLLNR D PYAAM PGVLS RIEYP SQENTIFRYVFGR
Sbjct: 227 AIGDVLLSTLLNRTDGPYAAMKPGVLSTRIEYPCSQENTIFRYVFGR 273

[Close]

BLAST of Moc02g15060 vs. NCBI nr
Match: XP_022158807.1 (uncharacterized protein LOC111025273 [Momordica charantia])

HSP 1 Score: 117.9 bits (294), Expect = 5.9e-23
Identity = 57/107 (53.27%), Postives = 72/107 (67.29%), Query Frame = 0


Query: 1   MDDKDSDGRTRSTVASLQGQEWYHDLLDPTVQLKDEVVDAPVLFTAKNLEKCLHLCR-KS 60
           MDD  +D  +RST   ++ + W+  LLDP  QL DE +D+ ++ TA+ +EKC HL R + 
Sbjct: 1   MDDPSTDDNSRSTSVGIKYKSWFGLLLDPQFQLDDEYIDSLMMLTARKVEKCKHLLRVQF 60

Query: 61  AIGDMLLSTLLNRADDPYAAMNPGVLSMRIEYPWSQENTIFRYVFGR 107
           AIGD+LLS LL R D PYAAM PGVL  +  Y W QE TIFRYV GR
Sbjct: 61  AIGDVLLSNLLRRTDGPYAAMKPGVLPSKCTYDWRQERTIFRYVLGR 107

[Close]

BLAST of Moc02g15060 vs. ExPASy TrEMBL
Match: A0A6J1DRS0 (uncharacterized protein LOC111022607 OS=Momordica charantia OX=3673 GN=LOC111022607 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.1e-41
Identity = 89/107 (83.18%), Postives = 93/107 (86.92%), Query Frame = 0


Query: 1   MDDKDSDGRTRSTVASLQGQEWYHDLLDPTVQLKDEVVDAPVLFTAKNLEKCLHLCRKS- 60
           MDD D DGRTRST A LQG+EWY DLLDPTVQLKDEVVDA VLFTAK LEKC++LCRK  
Sbjct: 167 MDDLDIDGRTRSTAAGLQGKEWYRDLLDPTVQLKDEVVDALVLFTAKKLEKCIYLCRKKF 226

Query: 61  AIGDMLLSTLLNRADDPYAAMNPGVLSMRIEYPWSQENTIFRYVFGR 107
           AIGD+LLSTLLNR D PYAAM PGVLS RIEYP SQENTIFRYVFGR
Sbjct: 227 AIGDVLLSTLLNRTDGPYAAMKPGVLSTRIEYPCSQENTIFRYVFGR 273

[Close]

BLAST of Moc02g15060 vs. ExPASy TrEMBL
Match: A0A6J1DY60 (uncharacterized protein LOC111025273 OS=Momordica charantia OX=3673 GN=LOC111025273 PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.9e-23
Identity = 57/107 (53.27%), Postives = 72/107 (67.29%), Query Frame = 0


Query: 1   MDDKDSDGRTRSTVASLQGQEWYHDLLDPTVQLKDEVVDAPVLFTAKNLEKCLHLCR-KS 60
           MDD  +D  +RST   ++ + W+  LLDP  QL DE +D+ ++ TA+ +EKC HL R + 
Sbjct: 1   MDDPSTDDNSRSTSVGIKYKSWFGLLLDPQFQLDDEYIDSLMMLTARKVEKCKHLLRVQF 60

Query: 61  AIGDMLLSTLLNRADDPYAAMNPGVLSMRIEYPWSQENTIFRYVFGR 107
           AIGD+LLS LL R D PYAAM PGVL  +  Y W QE TIFRYV GR
Sbjct: 61  AIGDVLLSNLLRRTDGPYAAMKPGVLPSKCTYDWRQERTIFRYVLGR 107

The following BLAST results are available for this feature:

BLAST of Moc02g15060 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155476.1	2.2e-41	83.18	uncharacterized protein LOC111022607 [Momordica charantia]	[more]
XP_022158807.1	5.9e-23	53.27	uncharacterized protein LOC111025273 [Momordica charantia]	[more]

BLAST of Moc02g15060 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc02g15060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DRS0	1.1e-41	83.18	uncharacterized protein LOC111022607 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1DY60	2.9e-23	53.27	uncharacterized protein LOC111025273 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]

BLAST of Moc02g15060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc02g15060.1	Moc02g15060.1	mRNA