Moc02g14780 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc02g14780
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Ribonuclease H
Location	chr2: 10969414 .. 10974510 (-)
RNA-Seq Expression	Moc02g14780
Synteny	Moc02g14780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAAGGCGACGAGTAGTGGCACCCGGAGATCGGGAGTATCTGGTTGACGATAAGGAGGAAAGGCCAGAGGTCGACGATCGAGAGAGGTCCTCCCACGCTGACCATTTGTTTCGGTCTAAAGTGGACCTCCTCCGAGATCAGTTCCAAAGGGAGATAGAAGATCTCAAGCGTCAGTGCAGGCCTGTAGACCCGCATAGCGTAGCCGACCAAGAGGAACCACCTTTCTCCCAAGCGATCCTAGACACCTATCCCACCGAGGTTCAAGGCTCCGGTCATGAGTTCTTACGACGGGTCTGGAGATCCGATCTCCTACGTGGAGGTGTTCGAGGGGAAGATGGATTTCCTGGCCGCAAGCGACGCCATGAAGTACCGAGCATTTCAAATAGCCTTGGAAGGCTCGGCAAGATTGTGGTACCGACAGTTGAAGCCCCGATCCATCAACAGTTATCAACAGTTGAGGAGGTTGTTCATCAACCAATTCTCAGCTCGGCAGTTGTTGAAGTTGCCGCCCTCTCACCTCAGAATAGTGAAGCAACGGGACAACGAGTCTCTGACGGAGTACATCGCTGGGTTCATGGACGAGCATGTCAAAGTGGTAAGTTGCAACGATGACATCGCCATGATGTACTTCACCACGAGTTTGAACGACAGGAACTTGACGATAGAGTTTGGAAGCCGACCGCCGGCCTTCCTGAACGAGATGCTCGCTAGAGCTCGCCAGTACATTGACGGCTTGGAGTTGTGGAAAGCCAATGGAGCCCGGTGAAGCAACCGCGGTAAAGATCGGGACCGAAAGTTCCCTCCTCCCAAGAAGCAACGAAGCGATGGTTGGGCTCGTCTCGGCGGGCCGACGACAACCAGAGTAGAGGCCGCCGCGATGAGAAGGCCCCTTTAGACCGACGAGGGCTGAAGATCGACAAGTTCACTCCGCTGAACGCCTCAATCGTAAGATCTACGCGGCGGCTAAAGATACCGACCTAGAGGCGCTTTTCGCAGCCCAGAAGGCTCCGCGACTTCCAGGGAAACGAGACAAGCGACTTTACTGACTGCGATTCCACAAGGATCACGGCCACGACACTTCACGCTATTTCCACCTGAAGGAGCAGGTTGAGGATCTGATCCGGAGGGTTTATCTCAAAAAATACATCGGCTGGCGTGAAACGGCAGAACCAGAGGGTCGGCTCGGGAGGAGAAGCGAGAGAAGTCACAACCACCGAGACGGAAGGAAGATCGTCCCGCCATTATAAATACCATCAATGGGGGCCCGAGTGGGGACAGTCGGGGCAGAAGAGAAAAGCTCTGGCTCGGGAGCAGCACACGAGGTTTGTACCTCGTACCCCAAGGAACCTGTGATGCCGATCTTATTCGACGACCAGACAGGGAATGAGTGCACATGCCCCATAATGACGCCCTAGTAATCGCCCCACTCATAGATCACGTGAAGGTGAGAAGAGTTCTTATCGACAGTGGAGCGTCGGCTAATATCTTATCGTTCTCGACCTACACGGCCCTGGGGTGGGAGAGGAAGCATTTGAAGCTCAGCCCGACGCCTTTGGTCGGTTTTGCAGGGAGTCAGTCAGCGCGGAAGGATGTGTCTCGCTCTCTGTCACCATTGGCGAGGGAGATCAACAAGTAACTAAGGTTGCAGAATTTGTTGTGATAGATCGGAGCTCTGCGTACAACGCCATAATTGGTCGGCCTTTGATTCACACGATTTCCGTGCAATTCCATCCACTTATCACCAGGTCTTGAAGTACCCCACCTCGACCGGAATTGCGACAATCCTGGGTGAGCAAAAGACGTCCAGAGAATGCTACACAGCCGCGATGAAGGGAACAGCCACTTGTGCAGCGGTCACGGACGCGGCAGAGCCATGTGCCGCCGAACCAAGCCGAGCCGCGGTACCCCCAGCCGAAGGGCTAAAGCTTGTCCCCCTGTTGGGGCCAGAAAAGCAGGTCAGCGTTGCCAGCAAACTAGGGGCCGAGGTAAAAGAAGAGTTAGTCGGTTTTCTAAAAGCAAATGATGACGTATTCGCATGGTCTCATGACGACATGCCGGGCATAGACCCAAGTATAATGGTGCATAGGCTTAATATAGATCCTAGCTATAGGTCTGTGAGGCAAAAGCGTCGGCCTGTCGACGCCGAGCGAAGTAATGTAATTTGTCAAGAAGTCGAGCAGTTGCTACAAGCTGAATTCATAAGAGAAGTTCATTACCCCGCGTGGCTATCTAATGTTGTTTTAGTTAAAAAGTCAAACGGCAAGTGGCGTGTCTGTATTGACTTTACGAGCCTCAATAAGGCGTGTCCGAAAGACAGTTTTCCCCTACCTCGGATAGATCAGCTCGTCGACGCAACGGCAGGGCATGAACTCATCTCCTTCATGGATGCATACTCTCCGGGTACAATCAGATTCGGATGCATGCGCCCGACCAAGAGTATACCGCCTTTGTTACCGATCAAGGGCTGTATTGTTACAACGTCATGCCTTTCAGTCTGAAGAATGCCGGGGCGACCTACCAGCGAATGGTTAACATGATGTTCGCCAACCAGATCGGACGCAACATGGAGGTATATGTAGACGTCATGTTAGTAAAAGTAGGCAAACGACCTCCCATTTAGCCGACCTGGTAGTGGCCTTCAGCGTGCTTCAGAAGTATCAGATGAAGCTCAACCCGAGCAGTGTGCCTTCGAGGTCTCGTCGGGAAATTCCTCGGGTTCATGGTACACGAACGTGGAATTGAAGCAAATCTGGGCAAGATAAGAGCAGTCCTCGAGATGGAAGCACCGAGGAATATTAAGCAGCTACAGAGGTTGAATGGTCGGCTGGCAGCCTTGAATCGCTTCGTATCTCGCTCTACTAACAAGTGCCACCCTTTCTTCCAAACACTAAGGAAAAAGGGTCGGTTCGAATGGACCGACGATTGCGAAGCTACACTTCGGCAGTTGAAGCAGTACCTCAACTCAGCTCCCTTGTTGTCAAAGCCGCTGCCTGGCGATGTACTCTACCTGTACCTAACAGTGTTGGAAAATGCAGTGAGCTCAGTACTTATCAGGGAGGCAGAAGGACGGTAGAGCCCTGTTTACTACACGAGCAAATCGTTGACCGAGGCCGAGGCTCGTTACCCCTGTGTTGAGAAGCAGGCCCTAGCCTTGGTAACCTCGGCGCGACGTCTACGACCATACTTCCAGGCGCACAAGATAATCGTTCTGACAAACTTCCCCTTGAGGCAGATTTTCTACAAGCCCGAAACGTCGGGTCGACTGATGAAGTGGGCCCTAGAGTTCAGTGAGCATGACATCGCCTTCGAGCCGAGAACAGCGTTGAAAGGTCAGGCAGCCGCAGACTTTGTTGCCGAGCTAACCCCACCCAGGCAAGGGGGCGATGTCCGTGACCAGTGGACACTATACGTGGATGGTTCGTCCAATGAGAAAGGTTGTGGGGCAGGCATGCTGCTCCTGGGCCCCGATGGTCTTCGCTTTGAGTACGCACTCCAGTTTAGCTTCCGAGCTTCCAACAACGAAGCCGAGTACGAGGCATTGATAAATGGACTGAAGGTCACCAGAGGGATGGGCGTGAGGCGACTTTTGATTCTCAGCGATTCCCAGCTGATTGTCAATCAGGTTACCGAGGAGTACTAAGTGAAGGAAGCTTGTATGGAGAGGTATCTGGCCAAAGCCCGAGTGCTCCTCGCCCAGTTTGAGGACTATGTGATTCGACAGGTGCCGAGGTCTGAAAACTCCAATGCCGACGCACTGGCTCGCCTAGCCTCGGCATACGAGACCGACCTACCGAGAACAGTTCCAGTTGAAATATTCGCTGAGTCGTCCATCGACCAGCCTGAGGTAATGGAGATCCAGTCAGCTCAGCCTACACGGATGGACCCGATTAAGGACTTCCTGGTCAGTGGCTCAGTCCCTGTCGATCCGAGCCAGGCCAAAAAGCTCCGACGTCAAGCTGCTCACTACTTGATGCAAGAAGGCAAGATCTTCAAGAGAGGATATTCCCTACCATTACTGCAGTGCCTCGACCCAGAGGAGGCGAGGTATGTCATGCGCGAGATTCATGAAGGGGTTTGCGGAAACCATGGAGGAGCTCGGTCCATGGCCGCGAAGGTCGTCCGCCAGGGCTACTACTGGCCGACAATTGAACGCGACACCAAGGAGTTCGCCGAAACATGCGACAAATGCCAACGCTTCGCGAGCATTTTGAGACAACCCCCGGAGATGCTGACACCGATCTCAAGCCCTTGGCCTTTCGCTCAGTGGGGGATAGATCTGATCGGCCCGCTACCGATGGGGAAGGGGCAGTTGAAGTTCGCCATAGTAGCTGTAGATTACTTCACCAAGTGGGTGGAAGCGGAACCTCTAGCGTCTATTACCGAGGCAAAGGTCGTCAGCTTTGTATGGAAGAGCATAATACGTCGGTTCGGTATACCGAACGCCATCATTACCGACAATGGAAAGCAGTTTGACGGTGCCCGTTTAATCAATTCTATCAACAGCTCGGCATACGTCACCTCAGCTCGTCGCCTGCCCATCCGCAGTCTAACGGGCAAGTTGAAGCTATCAACAAGATCATCAACCGTGGTCTGAAGACGAGGCTGGAATCTCTGAAAGGTCGGTGGGCAGAAGAGTTACCAGAGGTATTGTGGTCTTACCGAACTACACCCCGCCGATCTACAGGTGAGACGCCATACGGCCTGGCCTTCGGGTCGGAGACTGTCGTCCCTGCGGAAGTTGGCATGCCAACGCCCCGAGTTGAGAATTTCGACGAGCAAGCCAACAGTGAAGCTCTACTCGTGAATCTTGACCTCCTCGAGGAGAAAAGATCTCACTCCCAGCTCCGGCAAGCAGAATATCAGAACCGTATGACTCGGTACTACAATGCCAGAGTAAAAGTCAGAACGTTCAAGCCTGGCGACCTCGTCCGCAAGAAGGTAATGCAGCATGTCGGAGCACTCGAGCCGAACTGGGAAGGTCCGTACAAAGTGTTGAAAACACTCCGCCCTGGAGCGTATCTGCTGTCCGACCTCAATGGGAGACAACTCCCTCACCCATGGAATGCAGAGCATTTGCGAGTTTATTATCAATGA

mRNA sequence

ATGCCAAGGCGACGAGTAGTGGCACCCGGAGATCGGGAGTATCTGGTTGACGATAAGGAGGAAAGGCCAGAGGTCGACGATCGAGAGAGGTCCTCCCACGCTGACCATTTGTTTCGGTCTAAAGTGGACCTCCTCCGAGATCAGTTCCAAAGGGAGATAGAAGATCTCAAGCGTCAGTGCAGGCCTGTAGACCCGCATAGCGTAGCCGACCAAGAGGAACCACCTTTCTCCCAAGCGATCCTAGACACCTATCCCACCGAGGTTCAAGGCTCCGGTCATGAGTTCTTACGACGGGTCTGGAGATCCGATCTCCTACGTGGAGGTGTTCGAGGGGAAGATGGATTTCCTGGCCGCAAGCGACGCCATGAAGTACCGAGCATTTCAAATAGCCTTGGAAGGCTCGGCAAGATTGTGTTGTTGAAGTTGCCGCCCTCTCACCTCAGAATAGTGAAGCAACGGGACAACGAGTCTCTGACGGAGTACATCGCTGGGTTCATGGACGAGCATGTCAAAGTGGTAAGTTGCAACGATGACATCGCCATGATGTACTTCACCACGAGTTTGAACGACAGGAACTTGACGATAGAGTTTGGAAGCCGACCGCCGGCCTTCCTGAACGAGATGCTCGCTAGAGCTCGCCAGTACATTGACGGCTTGGAGTTGTGGAAAGCCAATGGAGCCCGAACCAGAGGGTCGGCTCGGGAGGAGAAGCGAGAGAAGTCACAACCACCGAGACGGAAGGAAGATCGTCCCGCCATTATAAATACCATCAATGGGGGCCCGAGTGGGGACAGTCGGGGCAGAAGAGAAAAGCTCTGGCTCGGGAGCAGCACACGAGATCACGTGAAGGTGAGAAGAGTTCTTATCGACAGTGGAGCGTCGGCTAATATCTTATCGTTCTCGACCTACACGGCCCTGGGGTGGGAGAGGAAGCATTTGAAGCTCAGCCCGACGCCTTTGGTCGGTTTTGCAGGGAGTCAATCGGAGCTCTGCGTACAACGCCATAATTGGTCGGCCTTTGATTCACACGATTTCCGTGCAATTCCATCCACTTATCACCAGGTCTTGAAGTACCCCACCTCGACCGGAATTGCGACAATCCTGGGTGAGCAAAAGACGTCCAGAGAATGCTACACAGCCGCGATGAAGGGAACAGCCACTTGTGCAGCGGTCACGGACGCGGCAGAGCCATGTGCCGCCGAACCAAGCCGAGCCGCGGTACCCCCAGCCGAAGGGCTAAAGCTTGTCCCCCTGTTGGGGCCAGAAAAGCAGGTCACCAGAGGGATGGGCGTGAGGCGACTTTTGATTCTCAGCGATTCCCAGCTGATTGTCAATCAGGTGCCGAGGTCTGAAAACTCCAATGCCGACGCACTGGCTCGCCTAGCCTCGGCATACGAGACCGACCTACCGAGAACAGTTCCAGTTGAAATATTCGCTGAGTCGTCCATCGACCAGCCTGAGGTAATGGAGATCCAGTCAGCTCAGCCTACACGGATGGACCCGATTAAGGACTTCCTGGTCAGTGGCTCAGTCCCTGTCGATCCGAGCCAGGCCAAAAAGCTCCGACGTCAAGCTGCTCACTACTTGATGCAAGAAGGCAAGATCTTCAAGAGAGGATATTCCCTACCATTACTGCAAGTAAAAGTCAGAACGTTCAAGCCTGGCGACCTCGTCCGCAAGAAGGTAATGCAGCATGTCGGAGCACTCGAGCCGAACTGGGAAGGTCCGTACAAAGTGTTGAAAACACTCCGCCCTGGAGCGTATCTGCTGTCCGACCTCAATGGGAGACAACTCCCTCACCCATGGAATGCAGAGCATTTGCGAGTTTATTATCAATGA

Coding sequence (CDS)

ATGCCAAGGCGACGAGTAGTGGCACCCGGAGATCGGGAGTATCTGGTTGACGATAAGGAGGAAAGGCCAGAGGTCGACGATCGAGAGAGGTCCTCCCACGCTGACCATTTGTTTCGGTCTAAAGTGGACCTCCTCCGAGATCAGTTCCAAAGGGAGATAGAAGATCTCAAGCGTCAGTGCAGGCCTGTAGACCCGCATAGCGTAGCCGACCAAGAGGAACCACCTTTCTCCCAAGCGATCCTAGACACCTATCCCACCGAGGTTCAAGGCTCCGGTCATGAGTTCTTACGACGGGTCTGGAGATCCGATCTCCTACGTGGAGGTGTTCGAGGGGAAGATGGATTTCCTGGCCGCAAGCGACGCCATGAAGTACCGAGCATTTCAAATAGCCTTGGAAGGCTCGGCAAGATTGTGTTGTTGAAGTTGCCGCCCTCTCACCTCAGAATAGTGAAGCAACGGGACAACGAGTCTCTGACGGAGTACATCGCTGGGTTCATGGACGAGCATGTCAAAGTGGTAAGTTGCAACGATGACATCGCCATGATGTACTTCACCACGAGTTTGAACGACAGGAACTTGACGATAGAGTTTGGAAGCCGACCGCCGGCCTTCCTGAACGAGATGCTCGCTAGAGCTCGCCAGTACATTGACGGCTTGGAGTTGTGGAAAGCCAATGGAGCCCGAACCAGAGGGTCGGCTCGGGAGGAGAAGCGAGAGAAGTCACAACCACCGAGACGGAAGGAAGATCGTCCCGCCATTATAAATACCATCAATGGGGGCCCGAGTGGGGACAGTCGGGGCAGAAGAGAAAAGCTCTGGCTCGGGAGCAGCACACGAGATCACGTGAAGGTGAGAAGAGTTCTTATCGACAGTGGAGCGTCGGCTAATATCTTATCGTTCTCGACCTACACGGCCCTGGGGTGGGAGAGGAAGCATTTGAAGCTCAGCCCGACGCCTTTGGTCGGTTTTGCAGGGAGTCAATCGGAGCTCTGCGTACAACGCCATAATTGGTCGGCCTTTGATTCACACGATTTCCGTGCAATTCCATCCACTTATCACCAGGTCTTGAAGTACCCCACCTCGACCGGAATTGCGACAATCCTGGGTGAGCAAAAGACGTCCAGAGAATGCTACACAGCCGCGATGAAGGGAACAGCCACTTGTGCAGCGGTCACGGACGCGGCAGAGCCATGTGCCGCCGAACCAAGCCGAGCCGCGGTACCCCCAGCCGAAGGGCTAAAGCTTGTCCCCCTGTTGGGGCCAGAAAAGCAGGTCACCAGAGGGATGGGCGTGAGGCGACTTTTGATTCTCAGCGATTCCCAGCTGATTGTCAATCAGGTGCCGAGGTCTGAAAACTCCAATGCCGACGCACTGGCTCGCCTAGCCTCGGCATACGAGACCGACCTACCGAGAACAGTTCCAGTTGAAATATTCGCTGAGTCGTCCATCGACCAGCCTGAGGTAATGGAGATCCAGTCAGCTCAGCCTACACGGATGGACCCGATTAAGGACTTCCTGGTCAGTGGCTCAGTCCCTGTCGATCCGAGCCAGGCCAAAAAGCTCCGACGTCAAGCTGCTCACTACTTGATGCAAGAAGGCAAGATCTTCAAGAGAGGATATTCCCTACCATTACTGCAAGTAAAAGTCAGAACGTTCAAGCCTGGCGACCTCGTCCGCAAGAAGGTAATGCAGCATGTCGGAGCACTCGAGCCGAACTGGGAAGGTCCGTACAAAGTGTTGAAAACACTCCGCCCTGGAGCGTATCTGCTGTCCGACCTCAATGGGAGACAACTCCCTCACCCATGGAATGCAGAGCATTTGCGAGTTTATTATCAATGA

Protein sequence

MPRRRVVAPGDREYLVDDKEERPEVDDRERSSHADHLFRSKVDLLRDQFQREIEDLKRQCRPVDPHSVADQEEPPFSQAILDTYPTEVQGSGHEFLRRVWRSDLLRGGVRGEDGFPGRKRRHEVPSISNSLGRLGKIVLLKLPPSHLRIVKQRDNESLTEYIAGFMDEHVKVVSCNDDIAMMYFTTSLNDRNLTIEFGSRPPAFLNEMLARARQYIDGLELWKANGARTRGSAREEKREKSQPPRRKEDRPAIINTINGGPSGDSRGRREKLWLGSSTRDHVKVRRVLIDSGASANILSFSTYTALGWERKHLKLSPTPLVGFAGSQSELCVQRHNWSAFDSHDFRAIPSTYHQVLKYPTSTGIATILGEQKTSRECYTAAMKGTATCAAVTDAAEPCAAEPSRAAVPPAEGLKLVPLLGPEKQVTRGMGVRRLLILSDSQLIVNQVPRSENSNADALARLASAYETDLPRTVPVEIFAESSIDQPEVMEIQSAQPTRMDPIKDFLVSGSVPVDPSQAKKLRRQAAHYLMQEGKIFKRGYSLPLLQVKVRTFKPGDLVRKKVMQHVGALEPNWEGPYKVLKTLRPGAYLLSDLNGRQLPHPWNAEHLRVYYQ

Homology

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BLAST of Moc02g14780 vs. NCBI nr
Match: XP_022156986.1 (uncharacterized protein LOC111023816 [Momordica charantia])

HSP 1 Score: 208.0 bits (528), Expect = 2.3e-49
Identity = 153/454 (33.70%), Postives = 167/454 (36.78%), Query Frame = 0


Query: 422 EKQVTRGMGVRRLLILSDSQLIVNQVPRSENSNADALARLASAYETDLPRTVPVEIFAES 481
           E ++ R +   R L+      ++ QVPRSENSNAD LARLASAY+TDLPRTVPVEI  ES
Sbjct: 392 EARMERYLAKARWLLAQFEDYVIRQVPRSENSNADVLARLASAYDTDLPRTVPVEILTES 451

Query: 482 SIDQPEVMEIQSAQPTRMDPIKDFLVSGSVPVDPSQAKKLRRQAAHYLMQEGKIFKRGYS 541
           S+DQPE+MEI SAQPT MDPIKDFLV+GSVP DPSQA+KLRRQAAHYLMQEGK+FKRGYS
Sbjct: 452 SVDQPELMEITSAQPTWMDPIKDFLVNGSVPADPSQARKLRRQAAHYLMQEGKLFKRGYS 511

Query: 542 LPLL-------------------------------------------------------- 601
           LPLL                                                        
Sbjct: 512 LPLLRCLDPEEARYVMREIHEGVCGNHGGAKSMAAKVVRQGYYWLTIERDTKEFAKTCDK 571

Query: 602 ------------------------------------------------------------ 613
                                                                       
Sbjct: 572 CQRFASILRQPPEMLTLISSPWPFAQWGIDLIGPLPMGKGQLKFAIVAVDYFTKWVEAEP 631

[Close]

BLAST of Moc02g14780 vs. NCBI nr
Match: XP_022158215.1 (uncharacterized protein LOC111024751 [Momordica charantia])

HSP 1 Score: 194.9 bits (494), Expect = 2.0e-45
Identity = 103/136 (75.74%), Postives = 113/136 (83.09%), Query Frame = 0


Query: 424 QVTRGMGVRRLLILSDSQLI-------------VNQVPRSENSNADALARLASAYETDLP 483
           +V RGMGVRRLLILSDSQL                +VPRSENSNADALA LASAYETDLP
Sbjct: 325 KVARGMGVRRLLILSDSQLCQSGYRGLPSKGSSYGEVPRSENSNADALALLASAYETDLP 384

Query: 484 RTVPVEIFAESSIDQPEVMEIQSAQPTRMDPIKDFLVSGSVPVDPSQAKKLRRQAAHYLM 543
           RTVPVEI  ESSIDQPE+M+I SA+PT MDPIKDFLV+GS+P DPSQA+KLRRQAAHYLM
Sbjct: 385 RTVPVEILVESSIDQPEIMDITSARPTWMDPIKDFLVNGSIPADPSQARKLRRQAAHYLM 444

Query: 544 QEGKIFKRGYSLPLLQ 547
           QEGK+FKRGYSLPLL+
Sbjct: 445 QEGKLFKRGYSLPLLR 460

[Close]

BLAST of Moc02g14780 vs. NCBI nr
Match: XP_022158844.1 (uncharacterized protein LOC111025310 [Momordica charantia])

HSP 1 Score: 180.6 bits (457), Expect = 4.0e-41
Identity = 156/470 (33.19%), Postives = 185/470 (39.36%), Query Frame = 0


Query: 166 MDEHVKVVSCNDDIAMMYFTTSLNDRNLTIEFGSRPPAFLNEMLARARQYIDGLELWKAN 225
           MDEHVKVVSC DDIAMMYFTT LNDRNLTIEF SRPPA LNEM ARARQYIDGLELWKAN
Sbjct: 1   MDEHVKVVSCTDDIAMMYFTTGLNDRNLTIEFRSRPPASLNEMFARARQYIDGLELWKAN 60

Query: 226 GAR--------------------------------------------------------- 285
           GAR                                                         
Sbjct: 61  GARRSSRGRDRDHKSPPSKKRCDDDRSSSRRADDDKSRSRRDERVTSNRRGPKFDKFTPL 120

Query: 286 ------------------------------------------------------------ 345
                                                                       
Sbjct: 121 NASIAEIYAVVEDTDMEVLFASPEKLRRPSGKRNKRLYCRFHKDHGHDTSRCFHLKEQVE 180

Query: 346 -------------------TRGSAREEKREKSQPPRRKEDRPAIINTINGGPSGDSRGRR 405
                                GSAREEKRE+SQPPR KEDRPA+INTI+GGPSG+  G++
Sbjct: 181 DLIRIGYLKKYVGSREQAELEGSAREEKRERSQPPRPKEDRPAVINTIHGGPSGEKSGQK 240

Query: 406 EKL---------------W-----------------------LGSSTRDHVKVRRVLIDS 460
            K                W                       + +   DHVKVRRV +D 
Sbjct: 241 RKALAREVAHEVCTSYPKWPVMPILFDEQDGERVHMPHNDALVIAPLIDHVKVRRVFVDG 300

[Close]

BLAST of Moc02g14780 vs. NCBI nr
Match: XP_022144033.1 (uncharacterized protein LOC111013825 [Momordica charantia])

HSP 1 Score: 173.7 bits (439), Expect = 4.9e-39
Identity = 114/340 (33.53%), Postives = 154/340 (45.29%), Query Frame = 0


Query: 145 SHLRIVKQRDNESLTEYIAGFMDEHVKVVSCNDDIAMMYFTTSLNDRNLTIEFGSRPPAF 204
           +HL I+KQ+   +L EY+  F ++ +KV  C+DD AM YF T L D  LT++     P  
Sbjct: 139 THLAIIKQKKGGTLREYVTRFQEKQLKVAHCSDDSAMCYFLTGLADETLTVKLEEEAPTT 198

Query: 205 LNEMLARARQYIDGLELW-------------------------------------KANGA 264
            +E+L +A++ +     +                                     +A   
Sbjct: 199 FSEVLQKAKKALAARNFYGPKLADLRSRSTRKNPSQEKRKAGSKSKDKGSSFSSGRAEYR 258

Query: 265 RTRGSAREEKREKSQPPRRKEDRPAIINTINGGPSGDSRGRREKLWLGSSTR-------- 324
           R+    ++E+R++S+ P R++DRPA+INTI GGPSG   G + K     + R        
Sbjct: 259 RSNSVEKKEERKRSRTPPRRDDRPAVINTIFGGPSGGQFGNKRKELAREARREVCIIREQ 318

Query: 325 ------------------------------DHVKVRRVLIDSGASANILSFSTYTALGWE 384
                                         DHV VRRVL+D GASANILS  TY  LGW 
Sbjct: 319 RSTSSITFDDVDLEGVHLPHNDALVIAPLIDHVLVRRVLVDGGASANILSLPTYLPLGWT 378

[Close]

BLAST of Moc02g14780 vs. NCBI nr
Match: XP_022149029.1 (uncharacterized protein LOC111017548 [Momordica charantia])

HSP 1 Score: 171.8 bits (434), Expect = 1.8e-38
Identity = 91/137 (66.42%), Postives = 107/137 (78.10%), Query Frame = 0


Query: 139 LLKLPPSHLRIVKQRDNESLTEYIAGFMDEHVKVVSCNDDIAMMYFTTSLNDRNLTIEFG 198
           LLKLPPSHL  VKQRDNESLTEYIA  MDEHVKVVSC DDIAMMYFTT LNDRNLTIEFG
Sbjct: 54  LLKLPPSHLETVKQRDNESLTEYIARLMDEHVKVVSCTDDIAMMYFTTGLNDRNLTIEFG 113

Query: 199 SRPPAFLNEMLARARQYIDGLELWKANGARTRGSAREEKREKSQPPRRK--EDRPAIINT 258
           SRPPA LN+MLARARQYIDGLELWKA GAR R S  +++ ++S PP+++  +D+ +    
Sbjct: 114 SRPPASLNKMLARARQYIDGLELWKAKGAR-RSSRGKDRDQRSSPPKKRHSDDQSSSRQA 173

Query: 259 INGGPSG--DSRGRREK 272
           ++    G  D RG  ++
Sbjct: 174 VDDRSRGQCDERGSSDR 189

[Close]

BLAST of Moc02g14780 vs. ExPASy TrEMBL
Match: A0A6J1DWM2 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111023816 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 1.1e-49
Identity = 153/454 (33.70%), Postives = 167/454 (36.78%), Query Frame = 0


Query: 422 EKQVTRGMGVRRLLILSDSQLIVNQVPRSENSNADALARLASAYETDLPRTVPVEIFAES 481
           E ++ R +   R L+      ++ QVPRSENSNAD LARLASAY+TDLPRTVPVEI  ES
Sbjct: 392 EARMERYLAKARWLLAQFEDYVIRQVPRSENSNADVLARLASAYDTDLPRTVPVEILTES 451

Query: 482 SIDQPEVMEIQSAQPTRMDPIKDFLVSGSVPVDPSQAKKLRRQAAHYLMQEGKIFKRGYS 541
           S+DQPE+MEI SAQPT MDPIKDFLV+GSVP DPSQA+KLRRQAAHYLMQEGK+FKRGYS
Sbjct: 452 SVDQPELMEITSAQPTWMDPIKDFLVNGSVPADPSQARKLRRQAAHYLMQEGKLFKRGYS 511

Query: 542 LPLL-------------------------------------------------------- 601
           LPLL                                                        
Sbjct: 512 LPLLRCLDPEEARYVMREIHEGVCGNHGGAKSMAAKVVRQGYYWLTIERDTKEFAKTCDK 571

Query: 602 ------------------------------------------------------------ 613
                                                                       
Sbjct: 572 CQRFASILRQPPEMLTLISSPWPFAQWGIDLIGPLPMGKGQLKFAIVAVDYFTKWVEAEP 631

[Close]

BLAST of Moc02g14780 vs. ExPASy TrEMBL
Match: A0A6J1DV78 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024751 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 9.9e-46
Identity = 103/136 (75.74%), Postives = 113/136 (83.09%), Query Frame = 0


Query: 424 QVTRGMGVRRLLILSDSQLI-------------VNQVPRSENSNADALARLASAYETDLP 483
           +V RGMGVRRLLILSDSQL                +VPRSENSNADALA LASAYETDLP
Sbjct: 325 KVARGMGVRRLLILSDSQLCQSGYRGLPSKGSSYGEVPRSENSNADALALLASAYETDLP 384

Query: 484 RTVPVEIFAESSIDQPEVMEIQSAQPTRMDPIKDFLVSGSVPVDPSQAKKLRRQAAHYLM 543
           RTVPVEI  ESSIDQPE+M+I SA+PT MDPIKDFLV+GS+P DPSQA+KLRRQAAHYLM
Sbjct: 385 RTVPVEILVESSIDQPEIMDITSARPTWMDPIKDFLVNGSIPADPSQARKLRRQAAHYLM 444

Query: 544 QEGKIFKRGYSLPLLQ 547
           QEGK+FKRGYSLPLL+
Sbjct: 445 QEGKLFKRGYSLPLLR 460

[Close]

BLAST of Moc02g14780 vs. ExPASy TrEMBL
Match: A0A6J1E0L8 (uncharacterized protein LOC111025310 OS=Momordica charantia OX=3673 GN=LOC111025310 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.9e-41
Identity = 156/470 (33.19%), Postives = 185/470 (39.36%), Query Frame = 0


Query: 166 MDEHVKVVSCNDDIAMMYFTTSLNDRNLTIEFGSRPPAFLNEMLARARQYIDGLELWKAN 225
           MDEHVKVVSC DDIAMMYFTT LNDRNLTIEF SRPPA LNEM ARARQYIDGLELWKAN
Sbjct: 1   MDEHVKVVSCTDDIAMMYFTTGLNDRNLTIEFRSRPPASLNEMFARARQYIDGLELWKAN 60

Query: 226 GAR--------------------------------------------------------- 285
           GAR                                                         
Sbjct: 61  GARRSSRGRDRDHKSPPSKKRCDDDRSSSRRADDDKSRSRRDERVTSNRRGPKFDKFTPL 120

Query: 286 ------------------------------------------------------------ 345
                                                                       
Sbjct: 121 NASIAEIYAVVEDTDMEVLFASPEKLRRPSGKRNKRLYCRFHKDHGHDTSRCFHLKEQVE 180

Query: 346 -------------------TRGSAREEKREKSQPPRRKEDRPAIINTINGGPSGDSRGRR 405
                                GSAREEKRE+SQPPR KEDRPA+INTI+GGPSG+  G++
Sbjct: 181 DLIRIGYLKKYVGSREQAELEGSAREEKRERSQPPRPKEDRPAVINTIHGGPSGEKSGQK 240

Query: 406 EKL---------------W-----------------------LGSSTRDHVKVRRVLIDS 460
            K                W                       + +   DHVKVRRV +D 
Sbjct: 241 RKALAREVAHEVCTSYPKWPVMPILFDEQDGERVHMPHNDALVIAPLIDHVKVRRVFVDG 300

[Close]

BLAST of Moc02g14780 vs. ExPASy TrEMBL
Match: A0A6J1CS66 (uncharacterized protein LOC111013825 OS=Momordica charantia OX=3673 GN=LOC111013825 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 2.4e-39
Identity = 114/340 (33.53%), Postives = 154/340 (45.29%), Query Frame = 0


Query: 145 SHLRIVKQRDNESLTEYIAGFMDEHVKVVSCNDDIAMMYFTTSLNDRNLTIEFGSRPPAF 204
           +HL I+KQ+   +L EY+  F ++ +KV  C+DD AM YF T L D  LT++     P  
Sbjct: 139 THLAIIKQKKGGTLREYVTRFQEKQLKVAHCSDDSAMCYFLTGLADETLTVKLEEEAPTT 198

Query: 205 LNEMLARARQYIDGLELW-------------------------------------KANGA 264
            +E+L +A++ +     +                                     +A   
Sbjct: 199 FSEVLQKAKKALAARNFYGPKLADLRSRSTRKNPSQEKRKAGSKSKDKGSSFSSGRAEYR 258

Query: 265 RTRGSAREEKREKSQPPRRKEDRPAIINTINGGPSGDSRGRREKLWLGSSTR-------- 324
           R+    ++E+R++S+ P R++DRPA+INTI GGPSG   G + K     + R        
Sbjct: 259 RSNSVEKKEERKRSRTPPRRDDRPAVINTIFGGPSGGQFGNKRKELAREARREVCIIREQ 318

Query: 325 ------------------------------DHVKVRRVLIDSGASANILSFSTYTALGWE 384
                                         DHV VRRVL+D GASANILS  TY  LGW 
Sbjct: 319 RSTSSITFDDVDLEGVHLPHNDALVIAPLIDHVLVRRVLVDGGASANILSLPTYLPLGWT 378

[Close]

BLAST of Moc02g14780 vs. ExPASy TrEMBL
Match: A0A6J1D5T3 (uncharacterized protein LOC111017548 OS=Momordica charantia OX=3673 GN=LOC111017548 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 8.9e-39
Identity = 91/137 (66.42%), Postives = 107/137 (78.10%), Query Frame = 0


Query: 139 LLKLPPSHLRIVKQRDNESLTEYIAGFMDEHVKVVSCNDDIAMMYFTTSLNDRNLTIEFG 198
           LLKLPPSHL  VKQRDNESLTEYIA  MDEHVKVVSC DDIAMMYFTT LNDRNLTIEFG
Sbjct: 54  LLKLPPSHLETVKQRDNESLTEYIARLMDEHVKVVSCTDDIAMMYFTTGLNDRNLTIEFG 113

Query: 199 SRPPAFLNEMLARARQYIDGLELWKANGARTRGSAREEKREKSQPPRRK--EDRPAIINT 258
           SRPPA LN+MLARARQYIDGLELWKA GAR R S  +++ ++S PP+++  +D+ +    
Sbjct: 114 SRPPASLNKMLARARQYIDGLELWKAKGAR-RSSRGKDRDQRSSPPKKRHSDDQSSSRQA 173

Query: 259 INGGPSG--DSRGRREK 272
           ++    G  D RG  ++
Sbjct: 174 VDDRSRGQCDERGSSDR 189

The following BLAST results are available for this feature:

BLAST of Moc02g14780 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156986.1	2.3e-49	33.70	uncharacterized protein LOC111023816 [Momordica charantia]	[more]
XP_022158215.1	2.0e-45	75.74	uncharacterized protein LOC111024751 [Momordica charantia]	[more]
XP_022158844.1	4.0e-41	33.19	uncharacterized protein LOC111025310 [Momordica charantia]	[more]
XP_022144033.1	4.9e-39	33.53	uncharacterized protein LOC111013825 [Momordica charantia]	[more]
XP_022149029.1	1.8e-38	66.42	uncharacterized protein LOC111017548 [Momordica charantia]	[more]

BLAST of Moc02g14780 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc02g14780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DWM2	1.1e-49	33.70	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111023816 PE=4 SV=1	[more]
A0A6J1DV78	9.9e-46	75.74	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024751 PE=4 SV=1	[more]
A0A6J1E0L8	1.9e-41	33.19	uncharacterized protein LOC111025310 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1CS66	2.4e-39	33.53	uncharacterized protein LOC111013825 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1D5T3	8.9e-39	66.42	uncharacterized protein LOC111017548 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]

BLAST of Moc02g14780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 39..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 229..252
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 227..269
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	CDD	cd00303	retropepsin_like	coord: 286..356 e-value: 1.89999E-6 score: 44.2496

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc02g14780.1	Moc02g14780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0030430	host cell cytoplasm
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity