Moc02g14220 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc02g14220
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	ATP synthase subunit alpha
Location	chr2: 10536439 .. 10536827 (+)
RNA-Seq Expression	Moc02g14220
Synteny	Moc02g14220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTGACATTTGTTGCCCTGGTTTATATCCCGGTAGTTCAAAACTAGAATTGGCACAATATCGCGAAGTGGCCGCCTTTGCTCAATTTGGGTCAGACCTTGATGCTGCCCAAGCGAAGATCGGCACTCGAAGGCTTGAGGAGCAACCTGCAAAAGGGAAAGCCCCCCGGCTGGGAGGAAGTGAGTTGTGGCTTATAAATAGGAAGATGAGGAGATAACGAGCGAAGGCTTTACCTGTCCCCGACGTGGACGCGGGCTTCTATAAGAGAATGAGAAGCTCTCAATACAAGAAAACGCGAACCGCGCGGAGCCTACCCGAGTTCGTGAAGTGGTTGGATTTTGCGAGCTATTCCAACCACGGTTGGATGTGATTCCAAGAGCCGAATGA

mRNA sequence

ATGCTTGACATTTGTTGCCCTGGTTTATATCCCGGTAGTTCAAAACTAGAATTGGCACAATATCGCGAAGTGGCCGCCTTTGCTCAATTTGGGTCAGACCTTGATGCTGCCCAAGCGAAGATCGGCACTCGAAGGCTTGAGGAGCAACCTGCAAAAGGGAAAGCCCCCCGGCTGGGAGGAAAGAATGAGAAGCTCTCAATACAAGAAAACGCGAACCGCGCGGAGCCTACCCGAGTTCGTGAAGTGGTTGGATTTTGCGAGCTATTCCAACCACGGTTGGATGTGATTCCAAGAGCCGAATGA

Coding sequence (CDS)

ATGCTTGACATTTGTTGCCCTGGTTTATATCCCGGTAGTTCAAAACTAGAATTGGCACAATATCGCGAAGTGGCCGCCTTTGCTCAATTTGGGTCAGACCTTGATGCTGCCCAAGCGAAGATCGGCACTCGAAGGCTTGAGGAGCAACCTGCAAAAGGGAAAGCCCCCCGGCTGGGAGGAAAGAATGAGAAGCTCTCAATACAAGAAAACGCGAACCGCGCGGAGCCTACCCGAGTTCGTGAAGTGGTTGGATTTTGCGAGCTATTCCAACCACGGTTGGATGTGATTCCAAGAGCCGAATGA

Protein sequence

MLDICCPGLYPGSSKLELAQYREVAAFAQFGSDLDAAQAKIGTRRLEEQPAKGKAPRLGGKNEKLSIQENANRAEPTRVREVVGFCELFQPRLDVIPRAE

Homology

[Close]

BLAST of Moc02g14220 vs. NCBI nr
Match: RCV43934.1 (hypothetical protein SETIT_9G334000v2 [Setaria italica])

HSP 1 Score: 57.8 bits (138), Expect = 6.3e-05
Identity = 37/62 (59.68%), Postives = 42/62 (67.74%), Query Frame = 0


Query: 12  GSSKLELAQYREVAAFAQFGSDLDAAQAKIGTR--RLEEQPAKGKAPRLGGKNEKLSIQE 71
           GSSKLELAQYREVAAFAQFGSDLDAA   +  R  RL E P + +   L  KN+ +S  E
Sbjct: 393 GSSKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVPKQPQYEPLPIKNKLISQYE 452

[Close]

BLAST of Moc02g14220 vs. NCBI nr
Match: QYK19258.1 (ATP synthase subunit 1 [Stelis grandiflora])

HSP 1 Score: 57.4 bits (137), Expect = 8.3e-05
Identity = 42/91 (46.15%), Postives = 51/91 (56.04%), Query Frame = 0


Query: 12  GSSKLELAQYREVAAFAQFGSDLDAAQAKIGTR--RLEEQPAKGKAPRLGGKNEKLSIQE 71
           GSSKLELAQYREVAAFAQFGSDLDAA   +  R  RL E P + +   L  + + + I  
Sbjct: 391 GSSKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVPKQPQYSPLPIEKQIVVIYA 450

Query: 72  NANRAEPTRVREVVGFCELFQPRLDVIPRAE 101
             N           GFC+  Q  LD+I + E
Sbjct: 451 AVN-----------GFCDRMQ--LDIISKYE 468

[Close]

BLAST of Moc02g14220 vs. NCBI nr
Match: QYK19125.1 (ATP synthase subunit 1 [Myoxanthus exasperatus])

HSP 1 Score: 57.4 bits (137), Expect = 8.3e-05
Identity = 42/91 (46.15%), Postives = 51/91 (56.04%), Query Frame = 0


Query: 12  GSSKLELAQYREVAAFAQFGSDLDAAQAKIGTR--RLEEQPAKGKAPRLGGKNEKLSIQE 71
           GSSKLELAQYREVAAFAQFGSDLDAA   +  R  RL E P + +   L  + + + I  
Sbjct: 391 GSSKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVPKQPQYSPLPIEKQIVVIYA 450

Query: 72  NANRAEPTRVREVVGFCELFQPRLDVIPRAE 101
             N           GFC+  Q  LD+I + E
Sbjct: 451 AVN-----------GFCDRMQ--LDIISKYE 468

[Close]

BLAST of Moc02g14220 vs. NCBI nr
Match: QYK19040.1 (ATP synthase subunit 1 [Stelis montserratii])

HSP 1 Score: 57.4 bits (137), Expect = 8.3e-05
Identity = 42/91 (46.15%), Postives = 51/91 (56.04%), Query Frame = 0


Query: 12  GSSKLELAQYREVAAFAQFGSDLDAAQAKIGTR--RLEEQPAKGKAPRLGGKNEKLSIQE 71
           GSSKLELAQYREVAAFAQFGSDLDAA   +  R  RL E P + +   L  + + + I  
Sbjct: 391 GSSKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVPKQPQYSPLPIEKQIVVIYA 450

Query: 72  NANRAEPTRVREVVGFCELFQPRLDVIPRAE 101
             N           GFC+  Q  LD+I + E
Sbjct: 451 AVN-----------GFCDRMQ--LDIISKYE 468

[Close]

BLAST of Moc02g14220 vs. NCBI nr
Match: QXE45560.1 (ATPase subunit 1 [Ceratonia siliqua])

HSP 1 Score: 56.6 bits (135), Expect = 1.4e-04
Identity = 43/91 (47.25%), Postives = 50/91 (54.95%), Query Frame = 0


Query: 12  GSSKLELAQYREVAAFAQFGSDLDAAQAKIGTR--RLEEQPAKGKAPRLGGKNEKLSIQE 71
           GSSKLELAQYREVAAFAQFGSDLDAA   +  R  RL E P + +   L  + + L I  
Sbjct: 391 GSSKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVPKQPQYEPLPIEKQILVIYA 450

Query: 72  NANRAEPTRVREVVGFCELFQPRLDVIPRAE 101
             N           GFC+  Q  LD I + E
Sbjct: 451 AVN-----------GFCDKMQ--LDSISKYE 468

[Close]

BLAST of Moc02g14220 vs. ExPASy Swiss-Prot
Match: P12862 (ATP synthase subunit alpha, mitochondrial OS=Triticum aestivum OX=4565 GN=ATPA PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 7.0e-07
Identity = 31/41 (75.61%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 12  GSSKLELAQYREVAAFAQFGSDLDAAQAKIGTR--RLEEQP 51
           GSSKLELAQYREVAAFAQFGSDLDAA   +  R  RL E P
Sbjct: 391 GSSKLELAQYREVAAFAQFGSDLDAASQALLNRGARLTEVP 431

[Close]

BLAST of Moc02g14220 vs. ExPASy Swiss-Prot
Match: P05494 (ATP synthase subunit alpha, mitochondrial OS=Zea mays OX=4577 GN=ATPA PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 9.2e-07
Identity = 31/41 (75.61%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 12  GSSKLELAQYREVAAFAQFGSDLDAAQAKIGTR--RLEEQP 51
           GSSKLELAQYREVAAFAQFGSDLDAA   +  R  RL E P
Sbjct: 391 GSSKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVP 431

[Close]

BLAST of Moc02g14220 vs. ExPASy Swiss-Prot
Match: P68542 (ATP synthase subunit alpha, mitochondrial OS=Brassica campestris OX=3711 GN=ATPA PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.6e-06
Identity = 38/78 (48.72%), Postives = 44/78 (56.41%), Query Frame = 0


Query: 12  GSSKLELAQYREVAAFAQFGSDLDAAQAKIGTR--RLEEQPAKGKAPRLGGKNEKLSIQE 71
           GSSKLELAQYREVAAFAQFGSDLDAA   +  R  RL E P + +   L  + + L I  
Sbjct: 391 GSSKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVPKQPQYAPLPIEKQILVIYA 450

Query: 72  NANRAEPTRVREVVGFCE 88
             N           GFC+
Sbjct: 451 AVN-----------GFCD 457

[Close]

BLAST of Moc02g14220 vs. ExPASy Swiss-Prot
Match: P22201 (ATP synthase subunit alpha, mitochondrial OS=Brassica napus OX=3708 GN=ATPA PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.6e-06
Identity = 38/78 (48.72%), Postives = 44/78 (56.41%), Query Frame = 0


Query: 12  GSSKLELAQYREVAAFAQFGSDLDAAQAKIGTR--RLEEQPAKGKAPRLGGKNEKLSIQE 71
           GSSKLELAQYREVAAFAQFGSDLDAA   +  R  RL E P + +   L  + + L I  
Sbjct: 391 GSSKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVPKQPQYAPLPIEKQILVIYA 450

Query: 72  NANRAEPTRVREVVGFCE 88
             N           GFC+
Sbjct: 451 AVN-----------GFCD 457

[Close]

BLAST of Moc02g14220 vs. ExPASy Swiss-Prot
Match: P68541 (ATP synthase subunit alpha, mitochondrial OS=Raphanus sativus OX=3726 GN=ATPA PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.6e-06
Identity = 38/78 (48.72%), Postives = 44/78 (56.41%), Query Frame = 0


Query: 12  GSSKLELAQYREVAAFAQFGSDLDAAQAKIGTR--RLEEQPAKGKAPRLGGKNEKLSIQE 71
           GSSKLELAQYREVAAFAQFGSDLDAA   +  R  RL E P + +   L  + + L I  
Sbjct: 391 GSSKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVPKQPQYAPLPIEKQILVIYA 450

Query: 72  NANRAEPTRVREVVGFCE 88
             N           GFC+
Sbjct: 451 AVN-----------GFCD 457

[Close]

BLAST of Moc02g14220 vs. ExPASy TrEMBL
Match: A0A368SNK4 (ATP synthase subunit alpha OS=Setaria italica OX=4555 GN=SETIT_9G334000v2 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.1e-05
Identity = 37/62 (59.68%), Postives = 42/62 (67.74%), Query Frame = 0


Query: 12  GSSKLELAQYREVAAFAQFGSDLDAAQAKIGTR--RLEEQPAKGKAPRLGGKNEKLSIQE 71
           GSSKLELAQYREVAAFAQFGSDLDAA   +  R  RL E P + +   L  KN+ +S  E
Sbjct: 393 GSSKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVPKQPQYEPLPIKNKLISQYE 452

[Close]

BLAST of Moc02g14220 vs. ExPASy TrEMBL
Match: M8D862 (ATP synthase subunit alpha OS=Aegilops tauschii OX=37682 GN=F775_32375 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 5.2e-05
Identity = 42/91 (46.15%), Postives = 51/91 (56.04%), Query Frame = 0


Query: 12  GSSKLELAQYREVAAFAQFGSDLDAAQAKIGTR--RLEEQPAKGKAPRLGGKNEKLSIQE 71
           GSSKLELAQYREVAAFAQFGSDLDAA   +  R  RL E P + +   L  + + + I  
Sbjct: 381 GSSKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVPKQPQYEPLPIEKQIVVIYA 440

Query: 72  NANRAEPTRVREVVGFCELFQPRLDVIPRAE 101
             N           GFC+  Q  LD+I + E
Sbjct: 441 AVN-----------GFCDRMQ--LDIISQYE 458

[Close]

BLAST of Moc02g14220 vs. ExPASy TrEMBL
Match: A0A2H4WZ99 (ATP synthase subunit alpha OS=Mostuea sp. NW-2017 OX=2057172 GN=atp1 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.2e-04
Identity = 43/91 (47.25%), Postives = 51/91 (56.04%), Query Frame = 0


Query: 12  GSSKLELAQYREVAAFAQFGSDLDAAQAKIGTR--RLEEQPAKGKAPRLGGKNEKLSIQE 71
           GSSKLELAQYREVAAFAQFGSDLDAA   +  R  RL E P + +   L  + E L I  
Sbjct: 391 GSSKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVPKQPQYAPLPIEKEILVIYA 450

Query: 72  NANRAEPTRVREVVGFCELFQPRLDVIPRAE 101
             N           GFC+  +  LD+I + E
Sbjct: 451 AVN-----------GFCD--RMPLDLISQYE 468

[Close]

BLAST of Moc02g14220 vs. ExPASy TrEMBL
Match: A0A7L7SQC2 (ATP synthase subunit alpha OS=Passiflora edulis OX=78168 GN=atp1 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.5e-04
Identity = 42/91 (46.15%), Postives = 51/91 (56.04%), Query Frame = 0


Query: 12  GSSKLELAQYREVAAFAQFGSDLDAAQAKIGTR--RLEEQPAKGKAPRLGGKNEKLSIQE 71
           GSSKLELAQYREVAAFAQFGSDLDAA   +  R  RL E P + +   L  + + L +  
Sbjct: 391 GSSKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVPKQPQYTPLPIEKQILVLYA 450

Query: 72  NANRAEPTRVREVVGFCELFQPRLDVIPRAE 101
             N           GFC+  +  LD IP+ E
Sbjct: 451 AVN-----------GFCD--RMPLDRIPQYE 468

[Close]

BLAST of Moc02g14220 vs. ExPASy TrEMBL
Match: D2XT90 (ATP synthase subunit alpha OS=Allium cepa OX=4679 GN=atpA PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.0e-04
Identity = 31/41 (75.61%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 12  GSSKLELAQYREVAAFAQFGSDLDAAQAKIGTR--RLEEQP 51
           GSSKLELAQYREVAAFAQFGSDLDAA   +  R  RL E P
Sbjct: 389 GSSKLELAQYREVAAFAQFGSDLDAATQALPNRGARLTEVP 429

[Close]

BLAST of Moc02g14220 vs. TAIR 10
Match: AT2G07698.1 (ATPase, F1 complex, alpha subunit protein )

HSP 1 Score: 53.5 bits (127), Expect = 1.1e-07
Identity = 38/78 (48.72%), Postives = 44/78 (56.41%), Query Frame = 0


Query: 12  GSSKLELAQYREVAAFAQFGSDLDAAQAKIGTR--RLEEQPAKGKAPRLGGKNEKLSIQE 71
           GSSKLELAQYREVAAFAQFGSDLDAA   +  R  RL E P + +   L  + + L I  
Sbjct: 661 GSSKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVPKQPQYAPLPIEKQILVIYA 720

Query: 72  NANRAEPTRVREVVGFCE 88
             N           GFC+
Sbjct: 721 AVN-----------GFCD 727

[Close]

BLAST of Moc02g14220 vs. TAIR 10
Match: ATMG01190.1 (ATP synthase subunit 1 )

HSP 1 Score: 53.5 bits (127), Expect = 1.1e-07
Identity = 38/78 (48.72%), Postives = 44/78 (56.41%), Query Frame = 0


Query: 12  GSSKLELAQYREVAAFAQFGSDLDAAQAKIGTR--RLEEQPAKGKAPRLGGKNEKLSIQE 71
           GSSKLELAQYREVAAFAQFGSDLDAA   +  R  RL E P + +   L  + + L I  
Sbjct: 391 GSSKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVPKQPQYAPLPIEKQILVIYA 450

Query: 72  NANRAEPTRVREVVGFCE 88
             N           GFC+
Sbjct: 451 AVN-----------GFCD 457

The following BLAST results are available for this feature:

BLAST of Moc02g14220 vs. NCBI nr


Match Name	E-value	Identity	Description
RCV43934.1	6.3e-05	59.68	hypothetical protein SETIT_9G334000v2 [Setaria italica]	[more]
QYK19258.1	8.3e-05	46.15	ATP synthase subunit 1 [Stelis grandiflora]	[more]
QYK19125.1	8.3e-05	46.15	ATP synthase subunit 1 [Myoxanthus exasperatus]	[more]
QYK19040.1	8.3e-05	46.15	ATP synthase subunit 1 [Stelis montserratii]	[more]
QXE45560.1	1.4e-04	47.25	ATPase subunit 1 [Ceratonia siliqua]	[more]

BLAST of Moc02g14220 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P12862	7.0e-07	75.61	ATP synthase subunit alpha, mitochondrial OS=Triticum aestivum OX=4565 GN=ATPA P...	[more]
P05494	9.2e-07	75.61	ATP synthase subunit alpha, mitochondrial OS=Zea mays OX=4577 GN=ATPA PE=3 SV=1	[more]
P68542	1.6e-06	48.72	ATP synthase subunit alpha, mitochondrial OS=Brassica campestris OX=3711 GN=ATPA...	[more]
P22201	1.6e-06	48.72	ATP synthase subunit alpha, mitochondrial OS=Brassica napus OX=3708 GN=ATPA PE=3...	[more]
P68541	1.6e-06	48.72	ATP synthase subunit alpha, mitochondrial OS=Raphanus sativus OX=3726 GN=ATPA PE...	[more]

BLAST of Moc02g14220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A368SNK4	3.1e-05	59.68	ATP synthase subunit alpha OS=Setaria italica OX=4555 GN=SETIT_9G334000v2 PE=3 S...	[more]
M8D862	5.2e-05	46.15	ATP synthase subunit alpha OS=Aegilops tauschii OX=37682 GN=F775_32375 PE=3 SV=1	[more]
A0A2H4WZ99	1.2e-04	47.25	ATP synthase subunit alpha OS=Mostuea sp. NW-2017 OX=2057172 GN=atp1 PE=3 SV=1	[more]
A0A7L7SQC2	1.5e-04	46.15	ATP synthase subunit alpha OS=Passiflora edulis OX=78168 GN=atp1 PE=3 SV=1	[more]
D2XT90	2.0e-04	75.61	ATP synthase subunit alpha OS=Allium cepa OX=4679 GN=atpA PE=3 SV=1	[more]

BLAST of Moc02g14220 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G07698.1	1.1e-07	48.72	ATPase, F1 complex, alpha subunit protein	[more]
ATMG01190.1	1.1e-07	48.72	ATP synthase subunit 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000793	ATP synthase, alpha subunit, C-terminal	PFAM	PF00306	ATP-synt_ab_C	coord: 12..39 e-value: 3.2E-9 score: 37.2
IPR038376	ATP synthase, alpha subunit, C-terminal domain superfamily	GENE3D	1.20.150.20		coord: 10..83 e-value: 1.3E-10 score: 43.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..73
None	No IPR available	SUPERFAMILY	47917	C-terminal domain of alpha and beta subunits of F1 ATP synthase	coord: 12..39

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc02g14220.1	Moc02g14220.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0043231	intracellular membrane-bounded organelle
cellular_component	GO:0016020	membrane
molecular_function	GO:0032559	adenyl ribonucleotide binding
molecular_function	GO:0043168	anion binding
molecular_function	GO:0003824	catalytic activity