Moc02g14060 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc02g14060
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Ribonuclease H
Location	chr2: 10374460 .. 10375703 (+)
RNA-Seq Expression	Moc02g14060
Synteny	Moc02g14060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATCGGCGCTCCAGAACCCTCATGGATGGACCCGATCGCGGACTTCATTAGGGGCGACTCACCACAAGACCCCAAGGAGCGCAGAAAGTTGGCAAGGCGGGCAGCTCGGTTCGTGGTCCGAGATGGGGCATTGTACCGACGTGGCTTTTCCCTGCCTCTGTTGAGATGCCTAACCCCTGAAGAGGGCCTGTACGTCCTCAGAGAGATCCACGAAGAAGTGTGCGGCAATCACTCAGGCGCCCGGTCGCTGTCAGCCAAAGTGATCCGACAAGGATATTATTGGCCGACCCTCAGCCAGGACGCCAAGAAGTTCGTTAGAACTTGCGACAATTGCCAACGCTACGGAACCATAATCCACCAACCTCCCGAGCTGCTCACCCCCATCTCGGCCCCGTGGCCATTCGCGCAGTGGGGGGTAGATATCATTGGTCCTTTCCCTTTGGGCAAGGGCCAGACCTAGTTCGCTGTGGTTGCTGTGGATTACTTCACCAAGTGGGCCGAGGCCGAAGCGCTCTCCCACATAATGGAATCCAGGGTCACGTCCTTCGTATGGACGAATATCATATGTCGCTGTGGTATACCATAGGCCATAGTGACAGACAATGGGAAGCAGTTTGACAACGCCAAGTTCAAAGACTTTTGCAGCAAACTTGGCATAAGTCATCTCAGCTCGTCCCCCGCACATCCGCAAGCAAATGGGTAGGTGGAGGCGGTCGACAAGATCATCAAGCGAGGCATCAAACTTAGACCGGACTCCAAGAAAGGCAGGTGGGCCGAGGAGCTACCAGAAGTTCTATGGTCGTACCGGACCACCCAACGGGGGTCGACGGGTGAGACCCCGTTCTCCCTGGCCTTTGGCTCCGAAGCTGTAGTCCCGGTTGAGATCGGCATGCCATCTGACAGAGTAGAGCATTACGAGCCTTCGACAAATGAGGAAGAGCTGCTCCTCAACCTCGACTTGTTGGAAGAAAGAAGAGCAATGGCCCAGCTACGCCTGGCGGAATATCAGGGCAGAATGGCCAGACATTACAATGCCCGCGTTCGACCTCGGGCCTTTCAGGTCGGACATCTGGTCTTAAGGAGGTCCAAACGCATGTGGGTGCCCTTGATCCGGCCTGGGAAGGCCCATTTGAGATCAAGGGCATAGTCCGACCTGGGACGTACGTATTGGCCGATCTGAAAGGAGATGTCCTCGCGCACCCGTGGAACGCGGAACACCTGAAGCGTTATTATCCTTGA

mRNA sequence

ATGGAGATCGGCGCTCCAGAACCCTCATGGATGGACCCGATCGCGGACTTCATTAGGGGCGACTCACCACAAGACCCCAAGGAGCGCAGAAAGTTGGCAAGGCGGGCAGCTCGGTTCGTGGTCCGAGATGGGGCATTGTACCGACGTGGCTTTTCCCTGCCTCTGTTGAGATGCCTAACCCCTGAAGAGGGCCTGTACGAGGTCCAAACGCATGTGGGTGCCCTTGATCCGGCCTGGGAAGGCCCATTTGAGATCAAGGGCATAGTCCGACCTGGGACGTACGTATTGGCCGATCTGAAAGGAGATGTCCTCGCGCACCCGTGGAACGCGGAACACCTGAAGCGTTATTATCCTTGA

Coding sequence (CDS)

ATGGAGATCGGCGCTCCAGAACCCTCATGGATGGACCCGATCGCGGACTTCATTAGGGGCGACTCACCACAAGACCCCAAGGAGCGCAGAAAGTTGGCAAGGCGGGCAGCTCGGTTCGTGGTCCGAGATGGGGCATTGTACCGACGTGGCTTTTCCCTGCCTCTGTTGAGATGCCTAACCCCTGAAGAGGGCCTGTACGAGGTCCAAACGCATGTGGGTGCCCTTGATCCGGCCTGGGAAGGCCCATTTGAGATCAAGGGCATAGTCCGACCTGGGACGTACGTATTGGCCGATCTGAAAGGAGATGTCCTCGCGCACCCGTGGAACGCGGAACACCTGAAGCGTTATTATCCTTGA

Protein sequence

MEIGAPEPSWMDPIADFIRGDSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLTPEEGLYEVQTHVGALDPAWEGPFEIKGIVRPGTYVLADLKGDVLAHPWNAEHLKRYYP

Homology

[Close]

BLAST of Moc02g14060 vs. NCBI nr
Match: XP_022143486.1 (uncharacterized protein LOC111013362 [Momordica charantia])

HSP 1 Score: 134.4 bits (337), Expect = 6.3e-28
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 1   MEIGAPEPSWMDPIADFIRGDSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLT 60
           MEIGAPE SWMDPIADFIRG+SPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLT
Sbjct: 250 MEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLT 309

Query: 61  PEEGLY 67
           PEEGLY
Sbjct: 310 PEEGLY 315

[Close]

BLAST of Moc02g14060 vs. NCBI nr
Match: XP_022136647.1 (uncharacterized protein LOC111008302 [Momordica charantia])

HSP 1 Score: 132.5 bits (332), Expect = 2.4e-27
Identity = 72/117 (61.54%), Postives = 80/117 (68.38%), Query Frame = 0


Query: 1   MEIGAPEPSWMDPIADFIRGDSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLT 60
           MEIGAPE SWMDPIADFIRG+SPQDPKERRKLARRAARFVVR  ALYRRGFSLPLLRCLT
Sbjct: 292 MEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRGEALYRRGFSLPLLRCLT 351

Query: 61  PEEGLYEV-QTHVGALDPAWEGPFEIKGIVRPGTYVLADLKGDVLAHPWNAEHLKRY 117
           PEEGLY + + H G              ++R G Y    L  DV       ++ +RY
Sbjct: 352 PEEGLYVLREIHEGVCGNHSGARSLSAKVIRQG-YYWPTLSQDVKKFVRTCDNCQRY 407

[Close]

BLAST of Moc02g14060 vs. NCBI nr
Match: XP_022142324.1 (uncharacterized protein LOC111012466 [Momordica charantia])

HSP 1 Score: 131.3 bits (329), Expect = 5.3e-27
Identity = 68/116 (58.62%), Postives = 77/116 (66.38%), Query Frame = 0


Query: 1   MEIGAPEPSWMDPIADFIRGDSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLT 60
           MEIGAPE SWMDPIADFIRG+SPQDP E RKLARRAARFVVR GALYRRGFSLPLLRCLT
Sbjct: 250 MEIGAPESSWMDPIADFIRGNSPQDPNEHRKLARRAARFVVRGGALYRRGFSLPLLRCLT 309

Query: 61  PEEGLYEVQTHVGALDPAWEGPFEIKGIVRPGTYVLADLKGDVLAHPWNAEHLKRY 117
           P+EGLY ++     +     G   +   V P  Y    L  D        ++ +RY
Sbjct: 310 PKEGLYVLREIHEGVCGNHSGARSLSAKVIPQGYYWPTLSQDANKFVRTCDNCQRY 365

[Close]

BLAST of Moc02g14060 vs. NCBI nr
Match: XP_022158219.1 (protein NYNRIN-like [Momordica charantia])

HSP 1 Score: 131.0 bits (328), Expect = 7.0e-27
Identity = 64/74 (86.49%), Postives = 67/74 (90.54%), Query Frame = 0


Query: 1   MEIGAPEPSWMDPIADFIRGDSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLT 60
           MEIGAPE SWMDPIADFIRG+SPQDPKERRKLA R ARFVVRDGALYRRGFSLPLLRCLT
Sbjct: 196 MEIGAPESSWMDPIADFIRGNSPQDPKERRKLAWRVARFVVRDGALYRRGFSLPLLRCLT 255

Query: 61  PEEGLYEV-QTHVG 74
           PEEGLY + + H G
Sbjct: 256 PEEGLYVLREVHEG 269

[Close]

BLAST of Moc02g14060 vs. NCBI nr
Match: XP_022158520.1 (uncharacterized protein LOC111024991 [Momordica charantia])

HSP 1 Score: 129.4 bits (324), Expect = 2.0e-26
Identity = 60/76 (78.95%), Postives = 67/76 (88.16%), Query Frame = 0


Query: 1   MEIGAPEPSWMDPIADFIRGDSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLT 60
           MEIGAPE SWM+PI DFI+G+SPQDPKERRKLARRAARFV+RDGALYRRGFSLPLL+CLT
Sbjct: 240 MEIGAPESSWMEPITDFIKGNSPQDPKERRKLARRAARFVIRDGALYRRGFSLPLLKCLT 299

Query: 61  PEEGLYEVQTHVGALD 77
           PEEGL + +  V   D
Sbjct: 300 PEEGLQDAKKFVRICD 315

[Close]

BLAST of Moc02g14060 vs. ExPASy TrEMBL
Match: A0A6J1CQD7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013362 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 3.0e-28
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 1   MEIGAPEPSWMDPIADFIRGDSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLT 60
           MEIGAPE SWMDPIADFIRG+SPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLT
Sbjct: 250 MEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLT 309

Query: 61  PEEGLY 67
           PEEGLY
Sbjct: 310 PEEGLY 315

[Close]

BLAST of Moc02g14060 vs. ExPASy TrEMBL
Match: A0A6J1C617 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111008302 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.2e-27
Identity = 72/117 (61.54%), Postives = 80/117 (68.38%), Query Frame = 0


Query: 1   MEIGAPEPSWMDPIADFIRGDSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLT 60
           MEIGAPE SWMDPIADFIRG+SPQDPKERRKLARRAARFVVR  ALYRRGFSLPLLRCLT
Sbjct: 292 MEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRGEALYRRGFSLPLLRCLT 351

Query: 61  PEEGLYEV-QTHVGALDPAWEGPFEIKGIVRPGTYVLADLKGDVLAHPWNAEHLKRY 117
           PEEGLY + + H G              ++R G Y    L  DV       ++ +RY
Sbjct: 352 PEEGLYVLREIHEGVCGNHSGARSLSAKVIRQG-YYWPTLSQDVKKFVRTCDNCQRY 407

[Close]

BLAST of Moc02g14060 vs. ExPASy TrEMBL
Match: A0A6J1CL97 (uncharacterized protein LOC111012466 OS=Momordica charantia OX=3673 GN=LOC111012466 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 2.6e-27
Identity = 68/116 (58.62%), Postives = 77/116 (66.38%), Query Frame = 0


Query: 1   MEIGAPEPSWMDPIADFIRGDSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLT 60
           MEIGAPE SWMDPIADFIRG+SPQDP E RKLARRAARFVVR GALYRRGFSLPLLRCLT
Sbjct: 250 MEIGAPESSWMDPIADFIRGNSPQDPNEHRKLARRAARFVVRGGALYRRGFSLPLLRCLT 309

Query: 61  PEEGLYEVQTHVGALDPAWEGPFEIKGIVRPGTYVLADLKGDVLAHPWNAEHLKRY 117
           P+EGLY ++     +     G   +   V P  Y    L  D        ++ +RY
Sbjct: 310 PKEGLYVLREIHEGVCGNHSGARSLSAKVIPQGYYWPTLSQDANKFVRTCDNCQRY 365

[Close]

BLAST of Moc02g14060 vs. ExPASy TrEMBL
Match: A0A6J1DYS0 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024755 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 3.4e-27
Identity = 64/74 (86.49%), Postives = 67/74 (90.54%), Query Frame = 0


Query: 1   MEIGAPEPSWMDPIADFIRGDSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLT 60
           MEIGAPE SWMDPIADFIRG+SPQDPKERRKLA R ARFVVRDGALYRRGFSLPLLRCLT
Sbjct: 196 MEIGAPESSWMDPIADFIRGNSPQDPKERRKLAWRVARFVVRDGALYRRGFSLPLLRCLT 255

Query: 61  PEEGLYEV-QTHVG 74
           PEEGLY + + H G
Sbjct: 256 PEEGLYVLREVHEG 269

[Close]

BLAST of Moc02g14060 vs. ExPASy TrEMBL
Match: A0A6J1DW30 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024991 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 9.8e-27
Identity = 60/76 (78.95%), Postives = 67/76 (88.16%), Query Frame = 0


Query: 1   MEIGAPEPSWMDPIADFIRGDSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLT 60
           MEIGAPE SWM+PI DFI+G+SPQDPKERRKLARRAARFV+RDGALYRRGFSLPLL+CLT
Sbjct: 240 MEIGAPESSWMEPITDFIKGNSPQDPKERRKLARRAARFVIRDGALYRRGFSLPLLKCLT 299

Query: 61  PEEGLYEVQTHVGALD 77
           PEEGL + +  V   D
Sbjct: 300 PEEGLQDAKKFVRICD 315

The following BLAST results are available for this feature:

BLAST of Moc02g14060 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143486.1	6.3e-28	96.97	uncharacterized protein LOC111013362 [Momordica charantia]	[more]
XP_022136647.1	2.4e-27	61.54	uncharacterized protein LOC111008302 [Momordica charantia]	[more]
XP_022142324.1	5.3e-27	58.62	uncharacterized protein LOC111012466 [Momordica charantia]	[more]
XP_022158219.1	7.0e-27	86.49	protein NYNRIN-like [Momordica charantia]	[more]
XP_022158520.1	2.0e-26	78.95	uncharacterized protein LOC111024991 [Momordica charantia]	[more]

BLAST of Moc02g14060 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc02g14060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CQD7	3.0e-28	96.97	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013362 PE=4 SV=1	[more]
A0A6J1C617	1.2e-27	61.54	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111008302 PE=4 SV=1	[more]
A0A6J1CL97	2.6e-27	58.62	uncharacterized protein LOC111012466 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]
A0A6J1DYS0	3.4e-27	86.49	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024755 PE=4 SV=1	[more]
A0A6J1DW30	9.8e-27	78.95	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024991 PE=4 SV=1	[more]

BLAST of Moc02g14060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc02g14060.1	Moc02g14060.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0030430	host cell cytoplasm
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity