Moc02g13940 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc02g13940
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Locationchr2: 10290776 .. 10291000 (+)
RNA-Seq ExpressionMoc02g13940
SyntenyMoc02g13940
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCAGACACTACAACGCCCGCGTTCGACCTCGGACCTTCCAAGTCGGACATATGGTCTTAAGGAAGGTCCAAACCCATGTGAGTGCCCTTGACCCGACCTGGGAGGGGCCGTTTGAGGTCAAGGGAATAGTCCGACCTGGGACGTACATATTGGCCGATCTGAAAGGAGACGTCCTCGCGCACCCGTGGAACGCGGAGCACCTGAAGCGTTATTATCCTTGA

mRNA sequence

ATGACCAGACACTACAACGCCCGCGTTCGACCTCGGACCTTCCAAGTCGGACATATGGTCTTAAGGAAGGTCCAAACCCATGTGAGTGCCCTTGACCCGACCTGGGAGGGGCCGTTTGAGGTCAAGGGAATAGTCCGACCTGGGACGTACATATTGGCCGATCTGAAAGGAGACGTCCTCGCGCACCCGTGGAACGCGGAGCACCTGAAGCGTTATTATCCTTGA

Coding sequence (CDS)

ATGACCAGACACTACAACGCCCGCGTTCGACCTCGGACCTTCCAAGTCGGACATATGGTCTTAAGGAAGGTCCAAACCCATGTGAGTGCCCTTGACCCGACCTGGGAGGGGCCGTTTGAGGTCAAGGGAATAGTCCGACCTGGGACGTACATATTGGCCGATCTGAAAGGAGACGTCCTCGCGCACCCGTGGAACGCGGAGCACCTGAAGCGTTATTATCCTTGA

Protein sequence

MTRHYNARVRPRTFQVGHMVLRKVQTHVSALDPTWEGPFEVKGIVRPGTYILADLKGDVLAHPWNAEHLKRYYP
Homology
[Close]
BLAST of Moc02g13940 vs. NCBI nr
Match: XP_022159003.1 (uncharacterized protein LOC111025448 [Momordica charantia])

HSP 1 Score: 130.2 bits (326), Expect = 7.4e-27
Identity = 55/74 (74.32%), Postives = 64/74 (86.49%), Query Frame = 0 

Query: 1   MTRHYNARVRPRTFQVGHMVLRKVQTHVSALDPTWEGPFEVKGIVRPGTYILADLKGDVL 60
           M RHYN R++PR+FQVGH+V  K+Q+HV  LDP+WE  FEVKGIVRPGTY+LADL+  VL
Sbjct: 556 MARHYNTRIQPRSFQVGHLVSSKIQSHVGTLDPSWEELFEVKGIVRPGTYMLADLERSVL 615

Query: 61  AHPWNAEHLKRYYP 75
           AHPWNAEHLKRYYP
Sbjct: 616 AHPWNAEHLKRYYP 629

[Close]
BLAST of Moc02g13940 vs. NCBI nr
Match: XP_022156070.1 (uncharacterized protein K02A2.6-like [Momordica charantia])

HSP 1 Score: 109.4 bits (272), Expect = 1.4e-20
Identity = 46/63 (73.02%), Postives = 57/63 (90.48%), Query Frame = 0 

Query: 1   MTRHYNARVRPRTFQVGHMVLRKVQTHVSALDPTWEGPFEVKGIVRPGTYILADLKGDVL 60
           M RHYN+RVR R+FQ+G++VLRKVQ HV  L+P+WEGPFEVKGIVRPGTY+LADL+G +L
Sbjct: 288 MARHYNSRVRSRSFQIGYLVLRKVQKHVEVLEPSWEGPFEVKGIVRPGTYMLADLEGKLL 347

Query: 61  AHP 64
           +HP
Sbjct: 348 SHP 350

[Close]
BLAST of Moc02g13940 vs. NCBI nr
Match: XP_022144032.1 (uncharacterized protein LOC111013824 [Momordica charantia])

HSP 1 Score: 104.8 bits (260), Expect = 3.3e-19
Identity = 43/55 (78.18%), Postives = 51/55 (92.73%), Query Frame = 0 

Query: 20  VLRKVQTHVSALDPTWEGPFEVKGIVRPGTYILADLKGDVLAHPWNAEHLKRYYP 75
           V +K+Q+HV  LDP+WEGPFEVKGI+R GTY+LADL+G+VLAHPWNAEHLKRYYP
Sbjct: 414 VEQKIQSHVGTLDPSWEGPFEVKGIIRFGTYMLADLEGNVLAHPWNAEHLKRYYP 468

[Close]
BLAST of Moc02g13940 vs. NCBI nr
Match: XP_022156986.1 (uncharacterized protein LOC111023816 [Momordica charantia])

HSP 1 Score: 101.3 bits (251), Expect = 3.7e-18
Identity = 43/73 (58.90%), Postives = 54/73 (73.97%), Query Frame = 0 

Query: 1   MTRHYNARVRPRTFQVGHMVLRKVQTHVSALDPTWEGPFEVKGIVRPGTYILADLKGDVL 60
           M R+YNARV+ RTF+   +VL+KV  HV AL+P WEGP+ V  I+RP  Y+L+DL G  L
Sbjct: 772 MARYYNARVKVRTFKPSDLVLKKVMQHVGALEPNWEGPYRVLKILRPRAYLLSDLNGRQL 831

Query: 61  AHPWNAEHLKRYY 74
            HPWNAEHL+ YY
Sbjct: 832 PHPWNAEHLRVYY 844

[Close]
BLAST of Moc02g13940 vs. NCBI nr
Match: XP_022156049.1 (uncharacterized protein LOC111023017 [Momordica charantia])

HSP 1 Score: 95.1 bits (235), Expect = 2.7e-16
Identity = 41/73 (56.16%), Postives = 51/73 (69.86%), Query Frame = 0 

Query: 1   MTRHYNARVRPRTFQVGHMVLRKVQTHVSALDPTWEGPFEVKGIVRPGTYILADLKGDVL 60
           M R+YN R R RTF+ G + L+KV  HV AL+P WEGP+ V  +VRP  Y+L+DL G  L
Sbjct: 118 MARYYNTRERVRTFKPGDLNLKKVMQHVEALEPNWEGPYRVLKVVRPRAYLLSDLNGRQL 177

Query: 61  AHPWNAEHLKRYY 74
            HPWNAE L+ YY
Sbjct: 178 PHPWNAEPLRVYY 190

[Close]
BLAST of Moc02g13940 vs. ExPASy TrEMBL
Match: A0A6J1DXL9 (uncharacterized protein LOC111025448 OS=Momordica charantia OX=3673 GN=LOC111025448 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 3.6e-27
Identity = 55/74 (74.32%), Postives = 64/74 (86.49%), Query Frame = 0 

Query: 1   MTRHYNARVRPRTFQVGHMVLRKVQTHVSALDPTWEGPFEVKGIVRPGTYILADLKGDVL 60
           M RHYN R++PR+FQVGH+V  K+Q+HV  LDP+WE  FEVKGIVRPGTY+LADL+  VL
Sbjct: 556 MARHYNTRIQPRSFQVGHLVSSKIQSHVGTLDPSWEELFEVKGIVRPGTYMLADLERSVL 615

Query: 61  AHPWNAEHLKRYYP 75
           AHPWNAEHLKRYYP
Sbjct: 616 AHPWNAEHLKRYYP 629

[Close]
BLAST of Moc02g13940 vs. ExPASy TrEMBL
Match: A0A6J1DP99 (uncharacterized protein K02A2.6-like OS=Momordica charantia OX=3673 GN=LOC111023037 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 6.6e-21
Identity = 46/63 (73.02%), Postives = 57/63 (90.48%), Query Frame = 0 

Query: 1   MTRHYNARVRPRTFQVGHMVLRKVQTHVSALDPTWEGPFEVKGIVRPGTYILADLKGDVL 60
           M RHYN+RVR R+FQ+G++VLRKVQ HV  L+P+WEGPFEVKGIVRPGTY+LADL+G +L
Sbjct: 288 MARHYNSRVRSRSFQIGYLVLRKVQKHVEVLEPSWEGPFEVKGIVRPGTYMLADLEGKLL 347

Query: 61  AHP 64
           +HP
Sbjct: 348 SHP 350

[Close]
BLAST of Moc02g13940 vs. ExPASy TrEMBL
Match: A0A6J1CSJ1 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013824 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.6e-19
Identity = 43/55 (78.18%), Postives = 51/55 (92.73%), Query Frame = 0 

Query: 20  VLRKVQTHVSALDPTWEGPFEVKGIVRPGTYILADLKGDVLAHPWNAEHLKRYYP 75
           V +K+Q+HV  LDP+WEGPFEVKGI+R GTY+LADL+G+VLAHPWNAEHLKRYYP
Sbjct: 414 VEQKIQSHVGTLDPSWEGPFEVKGIIRFGTYMLADLEGNVLAHPWNAEHLKRYYP 468

[Close]
BLAST of Moc02g13940 vs. ExPASy TrEMBL
Match: A0A6J1DWM2 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111023816 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.8e-18
Identity = 43/73 (58.90%), Postives = 54/73 (73.97%), Query Frame = 0 

Query: 1   MTRHYNARVRPRTFQVGHMVLRKVQTHVSALDPTWEGPFEVKGIVRPGTYILADLKGDVL 60
           M R+YNARV+ RTF+   +VL+KV  HV AL+P WEGP+ V  I+RP  Y+L+DL G  L
Sbjct: 772 MARYYNARVKVRTFKPSDLVLKKVMQHVGALEPNWEGPYRVLKILRPRAYLLSDLNGRQL 831

Query: 61  AHPWNAEHLKRYY 74
            HPWNAEHL+ YY
Sbjct: 832 PHPWNAEHLRVYY 844

[Close]
BLAST of Moc02g13940 vs. ExPASy TrEMBL
Match: A0A2N9FYD5 (Ribonuclease H OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19666 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.6e-17
Identity = 43/79 (54.43%), Postives = 53/79 (67.09%), Query Frame = 0 

Query: 1    MTRHYNARVRPRTFQVGHMVLRKV-----QTHVSALDPTWEGPFEVKGIVRPGTYILADL 60
            M RHYN+RV+PR   +G +VLRKV           L P WEGP++V  + RPGTY L D+
Sbjct: 1443 MARHYNSRVKPRQLSIGDLVLRKVTLATRNPSEGKLGPNWEGPYKVVEVRRPGTYHLEDM 1502

Query: 61   KGDVLAHPWNAEHLKRYYP 75
             G  L+HPWNAEHL+RYYP
Sbjct: 1503 NGRRLSHPWNAEHLRRYYP 1521

The following BLAST results are available for this feature:
BLAST of Moc02g13940 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022159003.17.4e-2774.32uncharacterized protein LOC111025448 [Momordica charantia][more]
XP_022156070.11.4e-2073.02uncharacterized protein K02A2.6-like [Momordica charantia][more]
XP_022144032.13.3e-1978.18uncharacterized protein LOC111013824 [Momordica charantia][more]
XP_022156986.13.7e-1858.90uncharacterized protein LOC111023816 [Momordica charantia][more]
XP_022156049.12.7e-1656.16uncharacterized protein LOC111023017 [Momordica charantia][more]
BLAST of Moc02g13940 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc02g13940 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DXL93.6e-2774.32uncharacterized protein LOC111025448 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1DP996.6e-2173.02uncharacterized protein K02A2.6-like OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6J1CSJ11.6e-1978.18Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013824 PE=4 SV=1[more]
A0A6J1DWM21.8e-1858.90Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111023816 PE=4 SV=1[more]
A0A2N9FYD52.6e-1754.43Ribonuclease H OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19666 PE=4 SV=1[more]
BLAST of Moc02g13940 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc02g13940.1Moc02g13940.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component GO:0030430 host cell cytoplasm
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity