Moc02g12920 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc02g12920
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionReverse transcriptase domain-containing protein
Locationchr2: 9421042 .. 9424825 (+)
RNA-Seq ExpressionMoc02g12920
SyntenyMoc02g12920
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATCCAGTGGAAAGTCACATCACTACTTCGAGGGAGTTTTAAGATTTGACGGGAAAAATTTCGGGTTTTGGAAAATGCAAGTGACAGATCTTCTTACATACAAGAAGATACACAAAACCTTGAAGGAACGACAGGCTGGGATGACAGATAAAGATTGGGCGGAGATGGATGAACAGGCCGTAGCGATTATCAGGTTGTGTTTGTCAATGAGTGTGGCGAGTCTTGTGGTGAGCCAAAAAATAGCAATTGATGGGATGTGAATCTCAGAGCGAAAGTGGATCCTCGTTCATGATTTTTTGAGAAAACAAAACAAATGTTCTAAGATGAAAAATACAGGAGAAACTTACATTTGAAGAACTTTTCTTCAACGATTTCCACCCGAACACCACCAAATGATCTTCCGTGCTATCCTTTTGGGTCTCGAGATTGCGCTTGTGGGAGCAATTCTTTGGAACGAGAGGGAGAGTTTCTTTAGAATTTGCCACAACACCACTGTTATCACAATAAAGTGTGATGGGCAAATTCATGTTTGGAACGACTTCCAAATATGTCAAGAACTTTCTAAGCTAAACCGCCTCTTTTGCTGCTTCACAAGCTGCAACGTACTCAGCCTCCATGGTGGAGTCAGCGATGCATCCTTGTTTGATGCTTCGCCAAACTACCGCTCCTCCGTTAAGAGTGAATACTGACCTCGACGTGGATGGTAGCTGGAAGCTAGTGAGGGGATCCAAGGTAGTGGCAGTTGGCCACAAAGAAGCTTTAGTATATGTGTCTAGATTTGAAGTTGTTAGAGGATCAAAAAGGCAGAGGATGCACAGGACTGCAGATGGTTCAAGGCGAGATTTGAAAGAATCAGTAGCATTGACAACCAGAACAGATCAGAAGAATCTGTCATCAGTTCAAAGTACAACAACTAGGAAGTAAAGAGAGGGGAAAAAGGAACAGCTCAGTGAGGTGTTCAACATGTTGTCAGTTTCTAGCACCAGTTGTCAGACGGTTTGGCGAGCTGATGAAATCGCATAGGCGACAAAGTGCATCAAGGGAGAAGATTACAGTTGGTGCTGAGGTCGAGTGTAATGTCTTTAGAGTGGCAACATAATTGGGTGGGTGTGCCAAGTTATCAAAAGGGAAGTCTTTCTTTAGAGGTCGTTGGGTTCGATTGAGGAAGGAAGCATCGGGGACCACTTAGATCGAGTGGGAGCACGTGACTGTGTCTCTAGCGTCTGGGAGACTAGACCACGTAGGATTGCTCAGTCTCGGAGCAATCACAGACGGAGCTTGGATAGGTCCAAGCAAATGAGAGTCAGTTACTGTTGGTGCAGTTAAAACTGAGCCTTGGCGGGATTGCCAAGATGATGGGTTTGCAGTACAAGATTGTTGTTTTGTCTCCAAGTAGGAGATTGTTAGTTGTGGAGACAAAAAAGATTACAAAAGAGAGGCGACGGCTCGAAGTTGGCAACATATAGAGGGGCAAATCGAGATCGACATATTTGGGTAATTAGTTCTCGATTTTATTGTGAGTGTTTTTCATTCCTTGTACATAAGTATATTGGGGTTAAATACTTAGAAGTTAGGGGACTTTTATTGAGATCTCAAAATCTGTGGGGAGATATATATTCGAGAGTGCCTTGTAATCCAATTTCATATTATGGTGGAACCCGCATCTGAGCGTAGCCCATAAATCGTTGAGGTGAACCAGTATAAATCTTGTGTCACTTTATTGTTTTCCCTATTTTTCTCTTGTATTATGTGATTGTATTAGGTAATTGGATAAAACTCTGGAAAGGGAAATTGTGTTGGAGTATCAAATTTCCCAACACGTACCTCCAAAAGGATCGAAAACTAAAAGTATAGAGATGAAAATAGTATTTTAATTTTAATTTTATGAAAATTTTCTTGAATGAAATATCCAGTTTATTGTATCTCACCGAAAATATACTTTAATGTTGTACTAAAAAAAGGAAAAAAAAAAGCGAAAAATACTTTAATAAAAAGTTGTATTGTCCCTACATTTTTTTTTTTTTATGAAATAAAAACACACCACACATGGTGTTTTTTTTTCCCTTTTTTATAATATTCATCGAGTAATTATGTTAATTATTTTTTATAAAATTAAGTATAAACCGCATGTGGTTCAGTAGCCTGAAATGACAAAAATTGGAAAAAAAATTTAGTATTACTTGGAGTATCATTCTCTCTTACACGTACTATTTGTCATATCAGAATCGATTCGTTCCATCTATTTTGTGTATGGAAGGGAGTATGGTATTCCCATATATGATTAGTAAAGATCTTAATTACATAAAAGATGGAATGTATAGAATTTACACTTTTGAAAAAATTTATTTAAGATGGTACTCATCGCCTAAATTACAAAACTATCCTTTTGTATCTACACATTAATATTAATTGATTTTTAAATTCTAGAATTCATTAATTGGAAGGTTATATTTTGAATCTCATAATAATATTTGTTTAATGATACTTTCCAAAAGAAACTAAAATACTAAAATATCCAAAAATATCTCCAAATCCTCGAATTCGAAAACCTCCAAAAATATCCTCAAATTCCTCAATTTTAAAAACCCCCAAATTCGAAAATAGTGACGGTTCGTGTCTTCTTCTCCGTTGGTCGGGATTGTTCTTCCGACTGCTTGCTCCTTCTCCGACGATTCACCTCAATTTCGCCTGCTTCATCCGTATCCGACGTTTCACCTCCATTCGTCTGCTTCATCTGTCTCAGAGGTTTAGTATCCATCGCAGAGGTTTCTTATTCGTGTCCTCCATTTCGTCCTCTCGTCTTTCACTGTTTCCGGTGCCGAGGAGTGCGTTCCCTCATCTCCGGTCCCCACGTCCGTTTATCCCAAAATTAAGGTATGCATCCCAATATATCCTAGTATTTAATAGGTATATATATTATATTCACTATATCTATAATAAAATTTCATTTCAAAATTGTTCACAGTGTATACATTATATCCTAGAAATATACCGATGAATACTTAATTATTAATATTCTATAATAATACGCAATAGGTAAGTTATATCCTACGTTAACGGTGTATATACATAATGTTATTTACCTTACGAATCTTAGTAGATTTCAGAAGTACAAGTAGAATATATATTATAACCTATATATAACATAAACATAAAAATCAAATAACGAAACAACATGAACGTAATTGAATGCATAATAAGAAATATATATACAAAGAAATTGGGATGTCTTGGTTGGCCTTATGCAAAGAAATTGGGAAATAAAAAAAATTATTAGAATAATCGTGGTGGCTCAAATGTAATCAAACATTTTAACCAAACTTGTTTTAACAAAATTGGAAATTGGAAGGGGTTAATTGAGTGGGTAGAACAAATCCGAATCATTCTAACAAAATTGGATATTGGAAATTGAAAGTGGTTAATTGCGTGGGAGGAAAAAAATCATACGGACAGAGGCAAAAACCTTGTTTTAACGGAATTGGATATTTTTTGAATTAATAATAATGGTTGCGTCGATCAGTGAGCTATTACGCACTCTTTCAAGGGTGGCTGCTTCTAGGCAAACCTCTTGGCTGCACCCCTATCTCCTTTATCAGTCATTTAGGGGCCTTAGCTGGTGATCCACGCTATTTCCCTCTCGACGATGAAGCTTATCCCTCATCGTCTCACTCGCTGATCTTGACTCTTGTTATTTTGAGATCATATCTAGTATTCAGAGTTTGCCTCGATTTGGTATCGCTCTCGCGGCCCGCACCGAAACAGTGCTTTACCCCTAGATAA

mRNA sequence

ATGGGATCCAGTGGAAAGTCACATCACTACTTCGAGGGAGTTTTAAGATTTGACGGGAAAAATTTCGGGTTTTGGAAAATGCAAGTGACAGATCTTCTTACATACAAGAAGATACACAAAACCTTGAAGGAACGACAGGCTGGGATGACAGATAAAGATTGGGCGGAGATGGATGAACAGGCCGTAGCGATTATCAGCTGGAAGCTAGTGAGGGGATCCAAGGTAGTGGCAGTTGGCCACAAAGAAGCTTTAGTATATGTGTCTAGATTTGAAGTTGTTAGAGGATCAAAAAGGCAGAGGATGCACAGGACTGCAGATGGTTCAAGGCGAGATTTGAAAGAATCAGTAGCATTGACAACCAGAACAGATCAGAAGAATCTGTCATCAGTTCAAACACCAGTTGTCAGACGGTTTGGCGAGCTGATGAAATCGCATAGGCGACAAAGTGCATCAAGGGAGAAGATTACAGTTGGTGCTGAGAGGTCGTTGGGTTCGATTGAGGAAGGAAGCATCGGGGACCACTTAGATCGAGTGGGAGCACGTGACTGTGTCTCTAGCGTCTGGGAGACTAGACCACGTAGGATTGCTCAGTCTCGGAGCAATCACAGACGGAGCTTGGATAGTCATTTAGGGGCCTTAGCTGGTGATCCACGCTATTTCCCTCTCGACGATGAAGCTTATCCCTCATCGTCTCACTCGCTGATCTTGACTCTTGTTATTTTGAGATCATATCTAGTATTCAGAGTTTGCCTCGATTTGGTATCGCTCTCGCGGCCCGCACCGAAACAGTGCTTTACCCCTAGATAA

Coding sequence (CDS)

ATGGGATCCAGTGGAAAGTCACATCACTACTTCGAGGGAGTTTTAAGATTTGACGGGAAAAATTTCGGGTTTTGGAAAATGCAAGTGACAGATCTTCTTACATACAAGAAGATACACAAAACCTTGAAGGAACGACAGGCTGGGATGACAGATAAAGATTGGGCGGAGATGGATGAACAGGCCGTAGCGATTATCAGCTGGAAGCTAGTGAGGGGATCCAAGGTAGTGGCAGTTGGCCACAAAGAAGCTTTAGTATATGTGTCTAGATTTGAAGTTGTTAGAGGATCAAAAAGGCAGAGGATGCACAGGACTGCAGATGGTTCAAGGCGAGATTTGAAAGAATCAGTAGCATTGACAACCAGAACAGATCAGAAGAATCTGTCATCAGTTCAAACACCAGTTGTCAGACGGTTTGGCGAGCTGATGAAATCGCATAGGCGACAAAGTGCATCAAGGGAGAAGATTACAGTTGGTGCTGAGAGGTCGTTGGGTTCGATTGAGGAAGGAAGCATCGGGGACCACTTAGATCGAGTGGGAGCACGTGACTGTGTCTCTAGCGTCTGGGAGACTAGACCACGTAGGATTGCTCAGTCTCGGAGCAATCACAGACGGAGCTTGGATAGTCATTTAGGGGCCTTAGCTGGTGATCCACGCTATTTCCCTCTCGACGATGAAGCTTATCCCTCATCGTCTCACTCGCTGATCTTGACTCTTGTTATTTTGAGATCATATCTAGTATTCAGAGTTTGCCTCGATTTGGTATCGCTCTCGCGGCCCGCACCGAAACAGTGCTTTACCCCTAGATAA

Protein sequence

MGSSGKSHHYFEGVLRFDGKNFGFWKMQVTDLLTYKKIHKTLKERQAGMTDKDWAEMDEQAVAIISWKLVRGSKVVAVGHKEALVYVSRFEVVRGSKRQRMHRTADGSRRDLKESVALTTRTDQKNLSSVQTPVVRRFGELMKSHRRQSASREKITVGAERSLGSIEEGSIGDHLDRVGARDCVSSVWETRPRRIAQSRSNHRRSLDSHLGALAGDPRYFPLDDEAYPSSSHSLILTLVILRSYLVFRVCLDLVSLSRPAPKQCFTPR
Homology
[Close]
BLAST of Moc02g12920 vs. NCBI nr
Match: KAA0046291.1 (putative endo-1,3(4)-beta-glucanase 2 [Cucumis melo var. makuwa])

HSP 1 Score: 111.7 bits (278), Expect = 9.9e-21
Identity = 55/64 (85.94%), Postives = 57/64 (89.06%), Query Frame = 0 

Query: 205 SLDSHLGALAGDPRYFPLDDEAYPSSSHSLILTLVILRSYLVFRVCLDLVSLSRPAPKQC 264
           SL SHLGALAGDP  FPLDDEAYPSSSHS  LTLVILRSYL+FRVCL+LV LS PAPKQC
Sbjct: 53  SLSSHLGALAGDPSCFPLDDEAYPSSSHSPTLTLVILRSYLIFRVCLNLVLLSLPAPKQC 112

Query: 265 FTPR 269
           FTPR
Sbjct: 113 FTPR 116

[Close]
BLAST of Moc02g12920 vs. NCBI nr
Match: KAA0058983.1 (putative endo-1,3(4)-beta-glucanase 2 [Cucumis melo var. makuwa])

HSP 1 Score: 109.0 bits (271), Expect = 6.4e-20
Identity = 54/64 (84.38%), Postives = 56/64 (87.50%), Query Frame = 0 

Query: 205 SLDSHLGALAGDPRYFPLDDEAYPSSSHSLILTLVILRSYLVFRVCLDLVSLSRPAPKQC 264
           SL SHLGALAGDP  FPLDDEAYPS SHS  LTLVILRSYL+FRVCL+LV LS PAPKQC
Sbjct: 53  SLSSHLGALAGDPGCFPLDDEAYPSLSHSPTLTLVILRSYLIFRVCLNLVLLSLPAPKQC 112

Query: 265 FTPR 269
           FTPR
Sbjct: 113 FTPR 116

[Close]
BLAST of Moc02g12920 vs. NCBI nr
Match: GEU30309.1 (reverse transcriptase domain-containing protein [Tanacetum cinerariifolium])

HSP 1 Score: 107.8 bits (268), Expect = 1.4e-19
Identity = 54/64 (84.38%), Postives = 54/64 (84.38%), Query Frame = 0 

Query: 205 SLDSHLGALAGDPRYFPLDDEAYPSSSHSLILTLVILRSYLVFRVCLDLVSLSRPAPKQC 264
           SL  HLGALAGDP  FPLDDEAYP SSH   LT VILRSYLVFRVCLDLV LSRPAPKQC
Sbjct: 317 SLSGHLGALAGDPGCFPLDDEAYPPSSHWPTLTPVILRSYLVFRVCLDLVPLSRPAPKQC 376

Query: 265 FTPR 269
           FTPR
Sbjct: 377 FTPR 380

[Close]
BLAST of Moc02g12920 vs. NCBI nr
Match: PLY86165.1 (hypothetical protein LSAT_6X94260 [Lactuca sativa])

HSP 1 Score: 107.8 bits (268), Expect = 1.4e-19
Identity = 54/64 (84.38%), Postives = 54/64 (84.38%), Query Frame = 0 

Query: 205 SLDSHLGALAGDPRYFPLDDEAYPSSSHSLILTLVILRSYLVFRVCLDLVSLSRPAPKQC 264
           SL  HLGALAGDP  FPLDDEAYP SSH   LT VILRSYLVFRVCLDLV LSRPAPKQC
Sbjct: 46  SLSDHLGALAGDPGCFPLDDEAYPPSSHWPTLTPVILRSYLVFRVCLDLVPLSRPAPKQC 105

Query: 265 FTPR 269
           FTPR
Sbjct: 106 FTPR 109

[Close]
BLAST of Moc02g12920 vs. NCBI nr
Match: KAG8363221.1 (hypothetical protein BUALT_BualtPtG0005500 [Buddleja alternifolia])

HSP 1 Score: 106.3 bits (264), Expect = 4.2e-19
Identity = 53/64 (82.81%), Postives = 53/64 (82.81%), Query Frame = 0 

Query: 205 SLDSHLGALAGDPRYFPLDDEAYPSSSHSLILTLVILRSYLVFRVCLDLVSLSRPAPKQC 264
           SL  HLGALAGDP  FPLDDEAYP SSH   LT VI RSYLVFRVCLDLV LSRPAPKQC
Sbjct: 46  SLSDHLGALAGDPGCFPLDDEAYPPSSHWPTLTPVIFRSYLVFRVCLDLVPLSRPAPKQC 105

Query: 265 FTPR 269
           FTPR
Sbjct: 106 FTPR 109

[Close]
BLAST of Moc02g12920 vs. ExPASy TrEMBL
Match: A0A5A7TY58 (Putative endo-1,3(4)-beta-glucanase 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1457G00020 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 4.8e-21
Identity = 55/64 (85.94%), Postives = 57/64 (89.06%), Query Frame = 0 

Query: 205 SLDSHLGALAGDPRYFPLDDEAYPSSSHSLILTLVILRSYLVFRVCLDLVSLSRPAPKQC 264
           SL SHLGALAGDP  FPLDDEAYPSSSHS  LTLVILRSYL+FRVCL+LV LS PAPKQC
Sbjct: 53  SLSSHLGALAGDPSCFPLDDEAYPSSSHSPTLTLVILRSYLIFRVCLNLVLLSLPAPKQC 112

Query: 265 FTPR 269
           FTPR
Sbjct: 113 FTPR 116

[Close]
BLAST of Moc02g12920 vs. ExPASy TrEMBL
Match: A0A5A7USR7 (Putative endo-1,3(4)-beta-glucanase 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1268G00020 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 3.1e-20
Identity = 54/64 (84.38%), Postives = 56/64 (87.50%), Query Frame = 0 

Query: 205 SLDSHLGALAGDPRYFPLDDEAYPSSSHSLILTLVILRSYLVFRVCLDLVSLSRPAPKQC 264
           SL SHLGALAGDP  FPLDDEAYPS SHS  LTLVILRSYL+FRVCL+LV LS PAPKQC
Sbjct: 53  SLSSHLGALAGDPGCFPLDDEAYPSLSHSPTLTLVILRSYLIFRVCLNLVLLSLPAPKQC 112

Query: 265 FTPR 269
           FTPR
Sbjct: 113 FTPR 116

[Close]
BLAST of Moc02g12920 vs. ExPASy TrEMBL
Match: A0A6L2J018 (Reverse transcriptase domain-containing protein OS=Tanacetum cinerariifolium OX=118510 GN=Tci_002287 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 6.9e-20
Identity = 54/64 (84.38%), Postives = 54/64 (84.38%), Query Frame = 0 

Query: 205 SLDSHLGALAGDPRYFPLDDEAYPSSSHSLILTLVILRSYLVFRVCLDLVSLSRPAPKQC 264
           SL  HLGALAGDP  FPLDDEAYP SSH   LT VILRSYLVFRVCLDLV LSRPAPKQC
Sbjct: 317 SLSGHLGALAGDPGCFPLDDEAYPPSSHWPTLTPVILRSYLVFRVCLDLVPLSRPAPKQC 376

Query: 265 FTPR 269
           FTPR
Sbjct: 377 FTPR 380

[Close]
BLAST of Moc02g12920 vs. ExPASy TrEMBL
Match: A0A2J6LFT8 (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_6X94260 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 6.9e-20
Identity = 54/64 (84.38%), Postives = 54/64 (84.38%), Query Frame = 0 

Query: 205 SLDSHLGALAGDPRYFPLDDEAYPSSSHSLILTLVILRSYLVFRVCLDLVSLSRPAPKQC 264
           SL  HLGALAGDP  FPLDDEAYP SSH   LT VILRSYLVFRVCLDLV LSRPAPKQC
Sbjct: 46  SLSDHLGALAGDPGCFPLDDEAYPPSSHWPTLTPVILRSYLVFRVCLDLVPLSRPAPKQC 105

Query: 265 FTPR 269
           FTPR
Sbjct: 106 FTPR 109

[Close]
BLAST of Moc02g12920 vs. ExPASy TrEMBL
Match: A0A2N9I7K2 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26797 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.0e-19
Identity = 55/66 (83.33%), Postives = 56/66 (84.85%), Query Frame = 0 

Query: 204 RSLD-SHLGALAGDPRYFPLDDEAYPSSSHSLILTLVILRSYLVFRVCLDLVSLSRPAPK 263
           R+LD  HLGALAGDP  FPLDDEAYP SSH   LT VILRSYLVFRVCLDLV LSRPAPK
Sbjct: 420 RALDHGHLGALAGDPGCFPLDDEAYPPSSHWPTLTPVILRSYLVFRVCLDLVPLSRPAPK 479

Query: 264 QCFTPR 269
           QCFTPR
Sbjct: 480 QCFTPR 485

The following BLAST results are available for this feature:
BLAST of Moc02g12920 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0046291.19.9e-2185.94putative endo-1,3(4)-beta-glucanase 2 [Cucumis melo var. makuwa][more]
KAA0058983.16.4e-2084.38putative endo-1,3(4)-beta-glucanase 2 [Cucumis melo var. makuwa][more]
GEU30309.11.4e-1984.38reverse transcriptase domain-containing protein [Tanacetum cinerariifolium][more]
PLY86165.11.4e-1984.38hypothetical protein LSAT_6X94260 [Lactuca sativa][more]
KAG8363221.14.2e-1982.81hypothetical protein BUALT_BualtPtG0005500 [Buddleja alternifolia][more]
BLAST of Moc02g12920 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc02g12920 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TY584.8e-2185.94Putative endo-1,3(4)-beta-glucanase 2 OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A5A7USR73.1e-2084.38Putative endo-1,3(4)-beta-glucanase 2 OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A6L2J0186.9e-2084.38Reverse transcriptase domain-containing protein OS=Tanacetum cinerariifolium OX=... [more]
A0A2J6LFT86.9e-2084.38Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_6X94260 PE=4 SV=1[more]
A0A2N9I7K22.0e-1983.33Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26797 PE=4 SV=1[more]
BLAST of Moc02g12920 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc02g12920.1Moc02g12920.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003964 RNA-directed DNA polymerase activity