Moc02g12390 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc02g12390
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	zf-RVT domain-containing protein
Location	chr2: 9009828 .. 9010667 (+)
RNA-Seq Expression	Moc02g12390
Synteny	Moc02g12390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAGCAGATTCTACGTTCTTTCCTGTGGAAAGGTTGTGAGAGTGGGCGATCGGGGGCTAAGGTGGCTTGATCTGAGGTGTGTATTACTTTGCGGGAGGGTGGTTTAGGTGTGCGTCATTTAGCTTTGTGGAATTTTGCCGCTATAATGAAGTTGCTCTGGCTTTTTTTACGAGGGCTGGCTCTCTTTTGGTGGCTTGGGTGGGGGCCTATATTCTTCGTGGGGATTGTTTGTGGACCGTTCGTGCCTCACCTCAATTCTTTTGGTGTTGGCTGGATATTCTTTCTGTTCAGGATGTTTTTCGACCTCTGGTTCGATTTGCTATTGGAGATGGGTAGCGTTGTTTTGTGTCGCATGATGCTTGGCTCCCCATGGGCCTGATTTATCTGAGATCTGGTGATCAAATTATCTATGATACTATAAGCTCATCTTGAGTGAAGGTTGCCTATTTCTATTTCCTGATGGTTCGTGGCGCTGGCCTCGGGGGTCGGCTGATCTTCGCCAGCTGGTCATTGAGGTTTCATCTGTGTTGGTTTTAGTTGGGAGTGTTGATATGCCTTTTTGGATTCGTGCGCCATCGGGTCTTTTCTCGGTGTCGAGTGCGTGGGGGTGTTGCGGCCGACCCGACCTCCTGTTCCTTGGTTTTCTCTGCTTTGGTTCGGTGGGAACATTCCGAAGCATTCTTTCATTGCTTGGTTGCCAGTGCGTGATCGTCTTGGTAATGAGGGATCGATTATGTCGTTGGGATTCTTTTGTTCTTGCTTCCTGTGTGTTTTGTGCTGGCTTGGAGTCCCGGGATCATTTATTCTTTGAGTGCCCCTTTAGTTCGGAGGTCTGA

mRNA sequence

ATGTTGAGCAGATTCTACGTTCTTTCCTGTGGAAAGGTTGTGAGAGTGGGCGATCGGGGGCTAAGGTGGCTTGATCTGAGGATGTTTTTCGACCTCTGGTTCGATTTGCTATTGGAGATGGGTAGCGTTCTCATCTTGAGTGAAGGTTGCCTATTTCTATTTCCTGATGGTTCGTGGCGCTGGCCTCGGGGGTCGGCTGATCTTCGCCAGCTGGTCATTGAGGTTTCATCTGTGTTGGTTTTAGTTGGGAGTGTTGATATGCCTTTTTGGATTCGTGCGCCATCGGGTCTTTTCTCGGTGTCGAGTGCGTGGGGGTGTTGCGGCCGACCCGACCTCCTGTTCCTTGGTTTTCTCTGCTTTGGTTCGGTGGGAACATTCCGAAGCATTCTTTCATTGCTTGGTTGCCAGTGCGTGATCGTCTTGGTAATGAGGGATCGATTATGTCGTTGGGATTCTTTTGTTCTTGCTTCCTGTGTGTTTTGTGCTGGCTTGGAGTCCCGGGATCATTTATTCTTTGAGTGCCCCTTTAGTTCGGAGGTCTGA

Coding sequence (CDS)

ATGTTGAGCAGATTCTACGTTCTTTCCTGTGGAAAGGTTGTGAGAGTGGGCGATCGGGGGCTAAGGTGGCTTGATCTGAGGATGTTTTTCGACCTCTGGTTCGATTTGCTATTGGAGATGGGTAGCGTTCTCATCTTGAGTGAAGGTTGCCTATTTCTATTTCCTGATGGTTCGTGGCGCTGGCCTCGGGGGTCGGCTGATCTTCGCCAGCTGGTCATTGAGGTTTCATCTGTGTTGGTTTTAGTTGGGAGTGTTGATATGCCTTTTTGGATTCGTGCGCCATCGGGTCTTTTCTCGGTGTCGAGTGCGTGGGGGTGTTGCGGCCGACCCGACCTCCTGTTCCTTGGTTTTCTCTGCTTTGGTTCGGTGGGAACATTCCGAAGCATTCTTTCATTGCTTGGTTGCCAGTGCGTGATCGTCTTGGTAATGAGGGATCGATTATGTCGTTGGGATTCTTTTGTTCTTGCTTCCTGTGTGTTTTGTGCTGGCTTGGAGTCCCGGGATCATTTATTCTTTGAGTGCCCCTTTAGTTCGGAGGTCTGA

Protein sequence

MLSRFYVLSCGKVVRVGDRGLRWLDLRMFFDLWFDLLLEMGSVLILSEGCLFLFPDGSWRWPRGSADLRQLVIEVSSVLVLVGSVDMPFWIRAPSGLFSVSSAWGCCGRPDLLFLGFLCFGSVGTFRSILSLLGCQCVIVLVMRDRLCRWDSFVLASCVFCAGLESRDHLFFECPFSSEV

Homology

[Close]

BLAST of Moc02g12390 vs. NCBI nr
Match: XP_022158861.1 (uncharacterized protein LOC111025324 [Momordica charantia])

HSP 1 Score: 121.3 bits (303), Expect = 8.4e-24
Identity = 67/131 (51.15%), Postives = 81/131 (61.83%), Query Frame = 0


Query: 52  FLFPDGSWRWPRGSADLRQLVIEVSSVLVLVGSVDMPFWIRAPSGLFSVSSAWGCC--GR 111
           FL PDGSWRWPR S DL +L+ EV SV  +VG  D   W  A SGLFSVSS WG     R
Sbjct: 175 FLLPDGSWRWPRVSVDLLELLPEVMSVRTVVGKEDRFVWTPAVSGLFSVSSVWGILRPRR 234

Query: 112 PDLLFLGFLCFGSVGTFRSILSLLGCQCVIVLVMRDRLCRWDSFVLASCVFCAGLESRDH 171
           P + +   L FG      S +S L  +    L  R+RL +W++ V A+CVFCAGLESRDH
Sbjct: 235 PPVSYFYLLWFGGNIPKHSFISWLAIR--DRLFTRERLRQWNALVPATCVFCAGLESRDH 294

Query: 172 LFFECPFSSEV 181
           LF +CP+S  V
Sbjct: 295 LFLDCPYSRAV 303

[Close]

BLAST of Moc02g12390 vs. NCBI nr
Match: KAA0046851.1 (uncharacterized protein E6C27_scaffold19358G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 82.8 bits (203), Expect = 3.3e-12
Identity = 53/132 (40.15%), Postives = 68/132 (51.52%), Query Frame = 0


Query: 52   FLFPDGSWRWPRGSADLRQLVIEVSSVLVLVGSVDMPFWIRAPSGLFSVSSAW-GCCGRP 111
            F+ P+G W WPR S +L  L   V  V   +   D   W+    G FS++SAW   C R 
Sbjct: 907  FIDPNGEWLWPRVSLELIDLWERVQEVSPCLSVSDSWVWVPGRQGGFSIASAWEAICPRG 966

Query: 112  D-LLFLGFLCFGSVGTFRSILSLLGCQCVIVLVMRDRLCRWDSFVLASCVFC-AGLESRD 171
              +L+ G L  G      S  + L  +    L  RDRL RWDS +  SC+ C  G+ESRD
Sbjct: 967  GRVLWDGLLWGGGNIPKHSFCAWLAIK--DRLDTRDRLHRWDSSIPLSCILCQGGVESRD 1026

Query: 172  HLFFECPFSSEV 181
            HLFF CPF  +V
Sbjct: 1027 HLFFSCPFGGDV 1036

[Close]

BLAST of Moc02g12390 vs. NCBI nr
Match: KAA0042317.1 (non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa] >TYK15441.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 75.5 bits (184), Expect = 5.3e-10
Identity = 52/133 (39.10%), Postives = 68/133 (51.13%), Query Frame = 0


Query: 52   FLFPDGSWRWPRGSADLRQLVIEVSSVLVLVGSVDMPFWIRAPSGLFSVSSAWGCCGRP- 111
            F+ PDG W+WPR S +L  L   V +V   +   D   W+    G FS++SA     RP 
Sbjct: 958  FIGPDGEWQWPRVSIELIDLWDRVQAVRPCLSVRDRWVWVPGHQGGFSIASALDTI-RPR 1017

Query: 112  --DLLFLGFLCFGSVGTFRSILSLLGCQCVIVLVMRDRLCRWDSFVLASCVFC-AGLESR 171
               + ++G L  G      S  + L  +    L  RDRL RWDS V  S + C  G+ESR
Sbjct: 1018 GGRVRWVGLLWGGGNVPKHSFCAWLTIK--NKLGTRDRLHRWDSSVPMSFILCQGGVESR 1077

Query: 172  DHLFFECPFSSEV 181
            DHLFF CPF  +V
Sbjct: 1078 DHLFFSCPFGRDV 1087

[Close]

BLAST of Moc02g12390 vs. NCBI nr
Match: XP_031745548.1 (uncharacterized protein LOC116405965 [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 4.5e-09
Identity = 48/133 (36.09%), Postives = 63/133 (47.37%), Query Frame = 0


Query: 52  FLFPDGSWRWPRGSADLRQLVIEVSSVLVLVGSVDMPFWIRAPSGLFSVSSAWGCCGRPD 111
           F+  DG WRWP  S DL  +   V  V       D   W+      FS++SAW    RP 
Sbjct: 39  FMGRDGDWRWPLVSLDLMDIWDRVQGVRPSPSVEDRWVWVSGSHDSFSITSAWETI-RPH 98

Query: 112 LLFLGFLCFGSVGTFRSILSLLGCQCVIV---LVMRDRLCRWDSFVLASCVFCAG-LESR 171
            + +G+   G +    +I     C  + +   L  RDRL RWD  +  SC+ C G  ESR
Sbjct: 99  SIRVGW--SGLLWGGGNIPKHSFCAWLAIRDRLGTRDRLSRWDRSIPLSCLLCGGNYESR 158

Query: 172 DHLFFECPFSSEV 181
           DHLFF C F  E+
Sbjct: 159 DHLFFSCHFGWEI 168

[Close]

BLAST of Moc02g12390 vs. NCBI nr
Match: XP_022157473.1 (uncharacterized protein LOC111024165 [Momordica charantia])

HSP 1 Score: 72.0 bits (175), Expect = 5.9e-09
Identity = 44/92 (47.83%), Postives = 53/92 (57.61%), Query Frame = 0


Query: 91  IRAPSGLFSVSSAWGCCG--RPDLLFLGFLCFGSVGTFRSILSLLGCQCVIVLVMRDRLC 150
           I   SGLFSVS+A       RP + +   + FG      S ++ L  +    L  RDRLC
Sbjct: 185 ISTSSGLFSVSNALDVLRPVRPPVPWFSLVWFGGNIPKHSFIAWLAMR--DRLATRDRLC 244

Query: 151 RWDSFVLASCVFCAGLESRDHLFFECPFSSEV 181
           RWD  V+ SCVFC G ES D+LFFECPFS EV
Sbjct: 245 RWDYSVMVSCVFCTGQESWDNLFFECPFSWEV 274

[Close]

BLAST of Moc02g12390 vs. ExPASy TrEMBL
Match: A0A6J1E271 (uncharacterized protein LOC111025324 OS=Momordica charantia OX=3673 GN=LOC111025324 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 4.1e-24
Identity = 67/131 (51.15%), Postives = 81/131 (61.83%), Query Frame = 0


Query: 52  FLFPDGSWRWPRGSADLRQLVIEVSSVLVLVGSVDMPFWIRAPSGLFSVSSAWGCC--GR 111
           FL PDGSWRWPR S DL +L+ EV SV  +VG  D   W  A SGLFSVSS WG     R
Sbjct: 175 FLLPDGSWRWPRVSVDLLELLPEVMSVRTVVGKEDRFVWTPAVSGLFSVSSVWGILRPRR 234

Query: 112 PDLLFLGFLCFGSVGTFRSILSLLGCQCVIVLVMRDRLCRWDSFVLASCVFCAGLESRDH 171
           P + +   L FG      S +S L  +    L  R+RL +W++ V A+CVFCAGLESRDH
Sbjct: 235 PPVSYFYLLWFGGNIPKHSFISWLAIR--DRLFTRERLRQWNALVPATCVFCAGLESRDH 294

Query: 172 LFFECPFSSEV 181
           LF +CP+S  V
Sbjct: 295 LFLDCPYSRAV 303

[Close]

BLAST of Moc02g12390 vs. ExPASy TrEMBL
Match: A0A5A7TZS0 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19358G00020 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.6e-12
Identity = 53/132 (40.15%), Postives = 68/132 (51.52%), Query Frame = 0


Query: 52   FLFPDGSWRWPRGSADLRQLVIEVSSVLVLVGSVDMPFWIRAPSGLFSVSSAW-GCCGRP 111
            F+ P+G W WPR S +L  L   V  V   +   D   W+    G FS++SAW   C R 
Sbjct: 907  FIDPNGEWLWPRVSLELIDLWERVQEVSPCLSVSDSWVWVPGRQGGFSIASAWEAICPRG 966

Query: 112  D-LLFLGFLCFGSVGTFRSILSLLGCQCVIVLVMRDRLCRWDSFVLASCVFC-AGLESRD 171
              +L+ G L  G      S  + L  +    L  RDRL RWDS +  SC+ C  G+ESRD
Sbjct: 967  GRVLWDGLLWGGGNIPKHSFCAWLAIK--DRLDTRDRLHRWDSSIPLSCILCQGGVESRD 1026

Query: 172  HLFFECPFSSEV 181
            HLFF CPF  +V
Sbjct: 1027 HLFFSCPFGGDV 1036

[Close]

BLAST of Moc02g12390 vs. ExPASy TrEMBL
Match: A0A5A7TKU4 (Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00080 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.6e-10
Identity = 52/133 (39.10%), Postives = 68/133 (51.13%), Query Frame = 0


Query: 52   FLFPDGSWRWPRGSADLRQLVIEVSSVLVLVGSVDMPFWIRAPSGLFSVSSAWGCCGRP- 111
            F+ PDG W+WPR S +L  L   V +V   +   D   W+    G FS++SA     RP 
Sbjct: 958  FIGPDGEWQWPRVSIELIDLWDRVQAVRPCLSVRDRWVWVPGHQGGFSIASALDTI-RPR 1017

Query: 112  --DLLFLGFLCFGSVGTFRSILSLLGCQCVIVLVMRDRLCRWDSFVLASCVFC-AGLESR 171
               + ++G L  G      S  + L  +    L  RDRL RWDS V  S + C  G+ESR
Sbjct: 1018 GGRVRWVGLLWGGGNVPKHSFCAWLTIK--NKLGTRDRLHRWDSSVPMSFILCQGGVESR 1077

Query: 172  DHLFFECPFSSEV 181
            DHLFF CPF  +V
Sbjct: 1078 DHLFFSCPFGRDV 1087

[Close]

BLAST of Moc02g12390 vs. ExPASy TrEMBL
Match: A0A6J1DTG0 (uncharacterized protein LOC111024165 OS=Momordica charantia OX=3673 GN=LOC111024165 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.8e-09
Identity = 44/92 (47.83%), Postives = 53/92 (57.61%), Query Frame = 0


Query: 91  IRAPSGLFSVSSAWGCCG--RPDLLFLGFLCFGSVGTFRSILSLLGCQCVIVLVMRDRLC 150
           I   SGLFSVS+A       RP + +   + FG      S ++ L  +    L  RDRLC
Sbjct: 185 ISTSSGLFSVSNALDVLRPVRPPVPWFSLVWFGGNIPKHSFIAWLAMR--DRLATRDRLC 244

Query: 151 RWDSFVLASCVFCAGLESRDHLFFECPFSSEV 181
           RWD  V+ SCVFC G ES D+LFFECPFS EV
Sbjct: 245 RWDYSVMVSCVFCTGQESWDNLFFECPFSWEV 274

[Close]

BLAST of Moc02g12390 vs. ExPASy TrEMBL
Match: A0A5D3CLU1 (Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00420 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 4.8e-09
Identity = 51/136 (37.50%), Postives = 66/136 (48.53%), Query Frame = 0


Query: 52  FLFPDGSWRWPRGSADLRQLVIEVSSVLVLVGSVDMPFWIRAPSGLFSVSSAWGCCGRP- 111
           F+  +G W W R   +L  L   V  V   +   D   W+    G FS++SAW    RP 
Sbjct: 608 FIGSNGEWLWSRVFLELINLWDRVQEVSPCLSVSDSWVWVPGRQGGFSIASAWKAI-RPR 667

Query: 112 --DLLFLGFLCFGSVGTFRSILSLLGCQCVIV---LVMRDRLCRWDSFVLASCVFC-AGL 171
              +L+ G L  G     R+I     C  + +   L  RDRL RWDS V   C+ C  G+
Sbjct: 668 GGRVLWDGLLWGG-----RNIPKHSFCAWLAIKDRLGTRDRLHRWDSSVPMWCILCRGGV 727

Query: 172 ESRDHLFFECPFSSEV 181
           ESRDHLFF CPF  +V
Sbjct: 728 ESRDHLFFSCPFGGDV 737

[Close]

BLAST of Moc02g12390 vs. TAIR 10
Match: AT3G24255.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 46.2 bits (108), Expect = 3.2e-05
Identity = 21/41 (51.22%), Postives = 28/41 (68.29%), Query Frame = 0


Query: 141 LVMRDRLCRWDSFVLASCVFCAGL-ESRDHLFFECPFSSEV 181
           L   DR+  W++   +SCV C  L E+RDHLFF CP+S+EV
Sbjct: 309 LTTGDRMLSWNAGADSSCVLCHHLVETRDHLFFTCPYSAEV 349

The following BLAST results are available for this feature:

BLAST of Moc02g12390 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158861.1	8.4e-24	51.15	uncharacterized protein LOC111025324 [Momordica charantia]	[more]
KAA0046851.1	3.3e-12	40.15	uncharacterized protein E6C27_scaffold19358G00020 [Cucumis melo var. makuwa]	[more]
KAA0042317.1	5.3e-10	39.10	non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuw...	[more]
XP_031745548.1	4.5e-09	36.09	uncharacterized protein LOC116405965 [Cucumis sativus]	[more]
XP_022157473.1	5.9e-09	47.83	uncharacterized protein LOC111024165 [Momordica charantia]	[more]

BLAST of Moc02g12390 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc02g12390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E271	4.1e-24	51.15	uncharacterized protein LOC111025324 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A5A7TZS0	1.6e-12	40.15	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5A7TKU4	2.6e-10	39.10	Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. mak...	[more]
A0A6J1DTG0	2.8e-09	47.83	uncharacterized protein LOC111024165 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A5D3CLU1	4.8e-09	37.50	Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. mak...	[more]

BLAST of Moc02g12390 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G24255.1	3.2e-05	51.22	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc02g12390.1	Moc02g12390.1	mRNA