Moc02g12000 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc02g12000
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionUnknown protein
Locationchr2: 8671378 .. 8672585 (-)
RNA-Seq ExpressionMoc02g12000
SyntenyMoc02g12000
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTTCAGATAGCGATGCTGATGGAGAACCAGAAGTTCGTAGAGGATCGCGAGGAGTGGTATTAGATAAGTTGATAGCTCCAGATGGAGGTAATCCGATACCAATTTCATGGATTGCAGAAGCAGGCAAACCTATTGGGTATCTAGCCAATCTATTCAATAGCGAAATTGGTTGTTTGATACATTGGAATGTTCCTTTAGAAATAAAGAAGAATAAGGACATCTCAGACAATGTTTATAATGAAATTATTCAACATTTGTTGGTAAGATAGTAATAATAGCATTATTCTATTTATCGTATAGTTGTTTAACATGGATATGATATTTCCTTAATTTTATTTGTTTACATGTGTAGAATAAATTTGAGGTCATCGATGTCACTATTTTTCATCATGTGGATTATATCAAGTATGAGATAGAGACGCGCTTCAAAGACTATCGGTGTCTTTTACATAGATACTATCGTGGATTTAAAGATCCAACAATGGCTCGACGACGCCCATATGGAAGAATTGAACAGAATGATTGGGACATGCTATGTAATAAATAGGAGACTATTGCATGGAAGGTAACTAATAATTGAATATTATTATTATTCATGTATAGAATTAATGATAAATCTTGAGGCAAAATCAGCGAAAAACAAAGCAAGTAGAAGTAAACTCTCATTTAATCATCGGGCTGGACCGAAATCATTTCTCTAGCATTAGGAAGATAAGGTATGAACTTCTGATTTGTAGTAGTATGTTATATGTTTTGCCTCTCATTATTGTTAATAATATGATGCTATAGAAAAAAGAAGATGGGACATATTTGAGCCCCTTTGAACTTTTTTACGCGACACATTGTCATCCGACAAAGGCTTGGACCAACGAAGCTGCTCAAACTTCATATGTAAGTACTAATCTGATGATATAAATTTAGTGGTAATATCTATTCAGAATTCTAGGTAATATATCTGTTTGTGTAGGAAAAAATGGTGGCATTAGTAGAACAGGCAAAAGAAGAAGGTCGAGAATTAAGTGAAGAAGATGCTATGGAAATAGCCCTCAGGAAAAGATCATCATACACTAAAGGGATGGGATATAGTCCGAAGCCACCCAGTAAAAAAGCGTCGGCAGGATGCTCACAAGAATACGTTCTGACATTGGAGGCCAGAGTTGCAAGAAATGAAGAATTATTACGGAGCCAACGAGAGGAATTATAA

mRNA sequence

ATGCCTTCAGATAGCGATGCTGATGGAGAACCAGAAGTTCGTAGAGGATCGCGAGGAGTGGTATTAGATAAGTTGATAGCTCCAGATGGAGGTAATCCGATACCAATTTCATGGATTGCAGAAGCAGGCAAACCTATTGGGTATCTAGCCAATCTATTCAATAGCGAAATTGGTTGTTTGATACATTGGAATGTTCCTTTAGAAATAAAGAAGAATAAGGACATCTCAGACAATGTTTATAATGAAATTATTCAACATTTGTTGGAAAAAATGGTGGCATTAGTAGAACAGGCAAAAGAAGAAGGTCGAGAATTAAGTGAAGAAGATGCTATGGAAATAGCCCTCAGGAAAAGATCATCATACACTAAAGGGATGGGATATAGTCCGAAGCCACCCAGTAAAAAAGCGTCGGCAGGATGCTCACAAGAATACGTTCTGACATTGGAGGCCAGAGTTGCAAGAAATGAAGAATTATTACGGAGCCAACGAGAGGAATTATAA

Coding sequence (CDS)

ATGCCTTCAGATAGCGATGCTGATGGAGAACCAGAAGTTCGTAGAGGATCGCGAGGAGTGGTATTAGATAAGTTGATAGCTCCAGATGGAGGTAATCCGATACCAATTTCATGGATTGCAGAAGCAGGCAAACCTATTGGGTATCTAGCCAATCTATTCAATAGCGAAATTGGTTGTTTGATACATTGGAATGTTCCTTTAGAAATAAAGAAGAATAAGGACATCTCAGACAATGTTTATAATGAAATTATTCAACATTTGTTGGAAAAAATGGTGGCATTAGTAGAACAGGCAAAAGAAGAAGGTCGAGAATTAAGTGAAGAAGATGCTATGGAAATAGCCCTCAGGAAAAGATCATCATACACTAAAGGGATGGGATATAGTCCGAAGCCACCCAGTAAAAAAGCGTCGGCAGGATGCTCACAAGAATACGTTCTGACATTGGAGGCCAGAGTTGCAAGAAATGAAGAATTATTACGGAGCCAACGAGAGGAATTATAA

Protein sequence

MPSDSDADGEPEVRRGSRGVVLDKLIAPDGGNPIPISWIAEAGKPIGYLANLFNSEIGCLIHWNVPLEIKKNKDISDNVYNEIIQHLLEKMVALVEQAKEEGRELSEEDAMEIALRKRSSYTKGMGYSPKPPSKKASAGCSQEYVLTLEARVARNEELLRSQREEL
Homology
BLAST of Moc02g12000 vs. NCBI nr
Match: XP_038895321.1 (uncharacterized protein LOC120083572 isoform X3 [Benincasa hispida])

HSP 1 Score: 66.2 bits (160), Expect = 3.0e-07
Identity = 36/88 (40.91%), Postives = 52/88 (59.09%), Query Frame = 0

Query: 10  EPEVRRGSRGVVLDKLIAPDGGNPIPISWIAEAGKPIGYLANLFNSEIGCLIHWNVPLEI 69
           E  VR  SRGV L+K  A  G   I ++W    GKPIG +A+LFN EIG L+   +PL+ 
Sbjct: 134 ERRVRGASRGVRLNKTTATMG--RIKVTWTPTQGKPIGDMASLFNGEIGVLVRKFIPLKY 193

Query: 70  KKNKDISDNVYNEIIQHLLEKMVALVEQ 98
           +K KDI + +Y+ + + LL +    + Q
Sbjct: 194 EKQKDIPNELYDILTEQLLNQFDVDISQ 219

BLAST of Moc02g12000 vs. NCBI nr
Match: XP_038895320.1 (uncharacterized protein LOC120083572 isoform X2 [Benincasa hispida])

HSP 1 Score: 66.2 bits (160), Expect = 3.0e-07
Identity = 36/88 (40.91%), Postives = 52/88 (59.09%), Query Frame = 0

Query: 10  EPEVRRGSRGVVLDKLIAPDGGNPIPISWIAEAGKPIGYLANLFNSEIGCLIHWNVPLEI 69
           E  VR  SRGV L+K  A  G   I ++W    GKPIG +A+LFN EIG L+   +PL+ 
Sbjct: 134 ERRVRGASRGVRLNKTTATMG--RIKVTWTPTQGKPIGDMASLFNGEIGVLVRKFIPLKY 193

Query: 70  KKNKDISDNVYNEIIQHLLEKMVALVEQ 98
           +K KDI + +Y+ + + LL +    + Q
Sbjct: 194 EKQKDIPNELYDILTEQLLNQFDVDISQ 219

BLAST of Moc02g12000 vs. NCBI nr
Match: XP_038895319.1 (uncharacterized protein LOC120083572 isoform X1 [Benincasa hispida])

HSP 1 Score: 66.2 bits (160), Expect = 3.0e-07
Identity = 36/88 (40.91%), Postives = 52/88 (59.09%), Query Frame = 0

Query: 10  EPEVRRGSRGVVLDKLIAPDGGNPIPISWIAEAGKPIGYLANLFNSEIGCLIHWNVPLEI 69
           E  VR  SRGV L+K  A  G   I ++W    GKPIG +A+LFN EIG L+   +PL+ 
Sbjct: 134 ERRVRGASRGVRLNKTTATMG--RIKVTWTPTQGKPIGDMASLFNGEIGVLVRKFIPLKY 193

Query: 70  KKNKDISDNVYNEIIQHLLEKMVALVEQ 98
           +K KDI + +Y+ + + LL +    + Q
Sbjct: 194 EKQKDIPNELYDILTEQLLNQFDVDISQ 219

BLAST of Moc02g12000 vs. NCBI nr
Match: RVW92791.1 (hypothetical protein CK203_042549 [Vitis vinifera])

HSP 1 Score: 57.0 bits (136), Expect = 1.8e-04
Identity = 57/240 (23.75%), Postives = 90/240 (37.50%), Query Frame = 0

Query: 7   ADGEPEVRRGSRGVVLDKLIAPDGGNPIPISWIAEAGKPIGYLANLFNSEIGCLIHWNVP 66
           A  +  VR  +RGV+LDKLI  +GG P+PI+     GK  G      ++EIG  +  + P
Sbjct: 3   APNKRNVRGKTRGVILDKLIEANGGKPLPITIKPSDGKQTGKYCEKLSNEIGLTVRQHAP 62

Query: 67  LEIKK-----------------------------------------NKDISDNVYN---E 126
           + ++K                                          K +SD   N   +
Sbjct: 63  VRVEKWKQMPRAEINTMLDRIKFFPCLTMKEKFALDLTQEHVKKILEKQLSDRFRNWRCD 122

Query: 127 IIQH-----------------------------------LLEKMVALVEQAKEEGR-ELS 167
           + +H                                     EKM+ L  Q   EG   ++
Sbjct: 123 LHKHFKKFPTVVEAKRNPHESVSNQEDWDYLCDRFSSEEFKEKMLELQRQPIAEGAVAMT 182

BLAST of Moc02g12000 vs. NCBI nr
Match: XP_022148911.1 (uncharacterized protein LOC111017461 [Momordica charantia])

HSP 1 Score: 56.6 bits (135), Expect = 2.3e-04
Identity = 35/80 (43.75%), Postives = 51/80 (63.75%), Query Frame = 0

Query: 89  EKMVALVEQAKEEGRELSEEDAMEIALRKRSSYTKGMGYSPKPPSKKASAG-CSQEYVLT 148
           E+M+ L      +G E +EE+ ME  L KRS+Y  GMGY PKP   K S+   S EYV +
Sbjct: 110 EEMITLKAYHASQGDEKTEEEIMETVLGKRSNYVIGMGYGPKPTRNKGSSSKYSDEYVES 169

Query: 149 LEARVARN-EELLRSQREEL 167
           LEAR+ ++ EE+ R+ +E++
Sbjct: 170 LEARLQKHEEEMARTTQEQI 189

BLAST of Moc02g12000 vs. ExPASy TrEMBL
Match: A0A438I7V1 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_042549 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 8.7e-05
Identity = 57/240 (23.75%), Postives = 90/240 (37.50%), Query Frame = 0

Query: 7   ADGEPEVRRGSRGVVLDKLIAPDGGNPIPISWIAEAGKPIGYLANLFNSEIGCLIHWNVP 66
           A  +  VR  +RGV+LDKLI  +GG P+PI+     GK  G      ++EIG  +  + P
Sbjct: 3   APNKRNVRGKTRGVILDKLIEANGGKPLPITIKPSDGKQTGKYCEKLSNEIGLTVRQHAP 62

Query: 67  LEIKK-----------------------------------------NKDISDNVYN---E 126
           + ++K                                          K +SD   N   +
Sbjct: 63  VRVEKWKQMPRAEINTMLDRIKFFPCLTMKEKFALDLTQEHVKKILEKQLSDRFRNWRCD 122

Query: 127 IIQH-----------------------------------LLEKMVALVEQAKEEGR-ELS 167
           + +H                                     EKM+ L  Q   EG   ++
Sbjct: 123 LHKHFKKFPTVVEAKRNPHESVSNQEDWDYLCDRFSSEEFKEKMLELQRQPIAEGAVAMT 182

BLAST of Moc02g12000 vs. ExPASy TrEMBL
Match: A0A6J1CQT5 (uncharacterized protein LOC111013476 OS=Momordica charantia OX=3673 GN=LOC111013476 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-04
Identity = 35/80 (43.75%), Postives = 51/80 (63.75%), Query Frame = 0

Query: 89  EKMVALVEQAKEEGRELSEEDAMEIALRKRSSYTKGMGYSPKPPSKKASAG-CSQEYVLT 148
           E+M+ L      +G E +EE+ ME  L KRS+Y  GMGY PKP   K S+   S EYV +
Sbjct: 105 EEMITLKAYHASQGDEKTEEEIMETVLGKRSNYVIGMGYGPKPTRNKGSSSKYSDEYVES 164

Query: 149 LEARVARN-EELLRSQREEL 167
           LEAR+ ++ EE+ R+ +E++
Sbjct: 165 LEARLQKHEEEMARTTQEQI 184

BLAST of Moc02g12000 vs. ExPASy TrEMBL
Match: A0A6J1D6S9 (uncharacterized protein LOC111017461 OS=Momordica charantia OX=3673 GN=LOC111017461 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-04
Identity = 35/80 (43.75%), Postives = 51/80 (63.75%), Query Frame = 0

Query: 89  EKMVALVEQAKEEGRELSEEDAMEIALRKRSSYTKGMGYSPKPPSKKASAG-CSQEYVLT 148
           E+M+ L      +G E +EE+ ME  L KRS+Y  GMGY PKP   K S+   S EYV +
Sbjct: 110 EEMITLKAYHASQGDEKTEEEIMETVLGKRSNYVIGMGYGPKPTRNKGSSSKYSDEYVES 169

Query: 149 LEARVARN-EELLRSQREEL 167
           LEAR+ ++ EE+ R+ +E++
Sbjct: 170 LEARLQKHEEEMARTTQEQI 189

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038895321.13.0e-0740.91uncharacterized protein LOC120083572 isoform X3 [Benincasa hispida][more]
XP_038895320.13.0e-0740.91uncharacterized protein LOC120083572 isoform X2 [Benincasa hispida][more]
XP_038895319.13.0e-0740.91uncharacterized protein LOC120083572 isoform X1 [Benincasa hispida][more]
RVW92791.11.8e-0423.75hypothetical protein CK203_042549 [Vitis vinifera][more]
XP_022148911.12.3e-0443.75uncharacterized protein LOC111017461 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A438I7V18.7e-0523.75Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_042549 PE=4 SV=1[more]
A0A6J1CQT51.1e-0443.75uncharacterized protein LOC111013476 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A6J1D6S91.1e-0443.75uncharacterized protein LOC111017461 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 145..165
NoneNo IPR availableCOILSCoilCoilcoord: 81..108

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc02g12000.1Moc02g12000.1mRNA