Moc02g10410 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc02g10410
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrotran_gag_3 domain-containing protein
Locationchr2: 7397018 .. 7398637 (-)
RNA-Seq ExpressionMoc02g10410
SyntenyMoc02g10410
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGTTTCTCATGGGATTGAACGACTCCTTCAGTCAATTGCCCGCCCAATTACTCTTAATGGAGCCCGAGCCCTCCATTAATCGCGCGTTTGCCCTAGTCGCTCAGGAATCTCAACAGCGGGTCATTTCGTCTCCGACTGTGATTTCTCCAACTGCTCTCTTAACAAGAGCTTCTTCTCAATCGGCCGTGTCTGGCAATTCTAGTTCTTTGGCTTCTACTGGCAAGAATAAAGAGCGCTCTATTTGCACTCATTGTGGTTTACAAGGTCACACAGTTGATAGGTGCTATAAGCTTCACGGTTATCCCCTTGGGTACCGCACACGCAGTGCTTCACAGAGTTCTTCTTCATTTTTGACTTTTGTGAATGATTCTTCTTCCAAAGGTTCTGTTGTTTTCAATGATTCACTCGCTTCTTTGAATGCCGAACAGTGTCAGGGGCTATTGAATCTTCTACACAGCCATCTCTCCAAAGCCAAAGATCCTTCTGCTACAACCATGTGGCAAGTACTTGTTCTAAATTTTCTACGAGTGCCTTAGTTGATAATTGGATAATTGATTCAGGAGCTTCGGCTCATATATGCTTTTCGAAGGATAAGTTTTTGTCTTTGCAACCAGTTTGTGGTGTTTCTGTTACTCTTCTACATTAGTCTCTGTTTAGAGTCAAGTTTGCTGGGGATATTTTGGTGAATTATGCACTTACTATCCACAATGTCTTGTTTGTGCCTAAGTTTAGATTCAATCTATTATCTGTCAGTGCTCTCACGCGCAGTAACTTATGTTTGGTGAATTTTGTTGGTAATTCTTGCCTCATTCAGAACAAGCTCTCATTGAAGATGATTGGCAATGGTGAATTTTGGAATGGCCTTTACATGCTTGTGATGGTCGAGTCTCTTTTGGTTGTTATACTCCAACTAATACTGTTTGTGATTCTATTAGTATGTCTTCCCTTTCTACTTGGCGTAATAGAATGGGACACCCCTCTGATAAGCATTTGGTTGCATTAAAAGATCTCTTGCATATCAATAAAGATGTTTGTTTCTTTGAATCCATGTCTCATATGTCCTTTGTCCAGACAACGACGTTTGTCTTTTATTTCCCATTATCATCTTGCGAGTGCTTGCTTTGATCTTATTCACTACGATATTTGGGGACCATTTAAGTCATCAACTCATGTTGGTTTTAGATATTTTCTGACTTTAGTTGATGATTTTTCGCAATATACTTGGGTGTTTTTGCTTCGCCATAAGTCTGATGCATTGATTGTTGTTCCTCGTTTTTTTCGGCTTATTGAGACACAATTTGAGAAGACTGTCAAACAGTTTAGGCCAGATAATGCACCCGAGTTATCTTTTGCTGATGTTTTTCATAGCAAAGACGTATTGCATCAATTTTCTTGCGTGGGGCGTCTTGAACAAAATTCGATGGTTAAGAGAAAACATCAGCATTTGTTGAATGTGGCACAATCTCTTTATTTTCAGTCTCGGTTGCCTATTAAATTTTGGGGAGAATGCGTACTCACAGCATGTTATCTGATTAATCGAACACCTTCTCCTATTTTGTCTTAGGAAACACCATACTTTCGTCTTCATGGCCAACATGTTGATTGTTCCCACTTGA

mRNA sequence

ATGATGTTTCTCATGGGATTGAACGACTCCTTCAGTCAATTGCCCGCCCAATTACTCTTAATGGAGCCCGAGCCCTCCATTAATCGCGCGTTTGCCCTAGTCGCTCAGGAATCTCAACAGCGGGTCATTTCGTCTCCGACTGTGATTTCTCCAACTGCTCTCTTAACAAGAGCTTCTTCTCAATCGGCCGTGTCTGGCAATTCTAGTTCTTTGGCTTCTACTGGCAAGAATAAAGAGCGCTCTATTTGCACTCATTGTGGTTTACAAGGTCACACAGTTGATAGGTGCTATAAGCTTCACGGTTATCCCCTTGGGTACCGCACACGCAGTGCTTCACAGAGTTCTTCTTCATTTTTGACTTTTGTGAATGATTCTTCTTCCAAAGGTTCTGTTGTTTTCAATGATTCACTCGCTTCTTTGAATGCCGAACAGTGTCAGGGGCTATTGAATCTTCTACACAGCCATCTCTCCAAAGCCAAAGATCCTTCTGCTACAACCATGTGGAAACACCATACTTTCGTCTTCATGGCCAACATGTTGATTGTTCCCACTTGA

Coding sequence (CDS)

ATGATGTTTCTCATGGGATTGAACGACTCCTTCAGTCAATTGCCCGCCCAATTACTCTTAATGGAGCCCGAGCCCTCCATTAATCGCGCGTTTGCCCTAGTCGCTCAGGAATCTCAACAGCGGGTCATTTCGTCTCCGACTGTGATTTCTCCAACTGCTCTCTTAACAAGAGCTTCTTCTCAATCGGCCGTGTCTGGCAATTCTAGTTCTTTGGCTTCTACTGGCAAGAATAAAGAGCGCTCTATTTGCACTCATTGTGGTTTACAAGGTCACACAGTTGATAGGTGCTATAAGCTTCACGGTTATCCCCTTGGGTACCGCACACGCAGTGCTTCACAGAGTTCTTCTTCATTTTTGACTTTTGTGAATGATTCTTCTTCCAAAGGTTCTGTTGTTTTCAATGATTCACTCGCTTCTTTGAATGCCGAACAGTGTCAGGGGCTATTGAATCTTCTACACAGCCATCTCTCCAAAGCCAAAGATCCTTCTGCTACAACCATGTGGAAACACCATACTTTCGTCTTCATGGCCAACATGTTGATTGTTCCCACTTGA

Protein sequence

MMFLMGLNDSFSQLPAQLLLMEPEPSINRAFALVAQESQQRVISSPTVISPTALLTRASSQSAVSGNSSSLASTGKNKERSICTHCGLQGHTVDRCYKLHGYPLGYRTRSASQSSSSFLTFVNDSSSKGSVVFNDSLASLNAEQCQGLLNLLHSHLSKAKDPSATTMWKHHTFVFMANMLIVPT
Homology
BLAST of Moc02g10410 vs. NCBI nr
Match: XP_022154919.1 (uncharacterized protein LOC111022065 [Momordica charantia])

HSP 1 Score: 161.0 bits (406), Expect = 9.8e-36
Identity = 97/168 (57.74%), Postives = 117/168 (69.64%), Query Frame = 0

Query: 1   MMFLMGLNDSFSQLPAQLLLMEPEPSINRAFALVAQESQQRVISSPTVISPTALLTRASS 60
           M FLMGLN SFSQ+ AQLLLMEP P+INRAFALVAQE QQR IS P+V SPTA   RA+S
Sbjct: 195 MAFLMGLNVSFSQIRAQLLLMEPAPTINRAFALVAQEMQQRSISLPSVTSPTASAVRATS 254

Query: 61  QSAVSGNSSSLASTGKNKERSICTHCGLQGHTVDRCYKLHGYPLGYR-----TRSASQSS 120
            S+ S  +SS AS  K K++S+CTHCG+ GHTVD+CYKLH YP GYR     T S++ +S
Sbjct: 255 NSSNSRLNSSSASHMKRKDKSLCTHCGIYGHTVDKCYKLHEYPPGYRSSVHKTTSSNATS 314

Query: 121 SSFLTFVNDSSSKGSVVFNDSLASLNAEQCQGLLNLLHSHLSKAKDPS 164
           S      + S S      ++SLA+L A+QCQ LL LL SHL+  K  S
Sbjct: 315 SRSAEAPSKSVSATPSGISNSLATLTADQCQRLLTLLQSHLTTTKTAS 362

BLAST of Moc02g10410 vs. NCBI nr
Match: XP_022158788.1 (uncharacterized protein LOC111025254 [Momordica charantia])

HSP 1 Score: 144.1 bits (362), Expect = 1.2e-30
Identity = 93/180 (51.67%), Postives = 113/180 (62.78%), Query Frame = 0

Query: 1   MMFLMGLNDSFSQLPAQLLLMEPEPSINRAFALVAQESQQRVISSPTVISPTALLTR--- 60
           M FLMGLNDSFSQ  AQLLLMEPEPSINR  +LVAQE+QQR I+S    SP  LL R   
Sbjct: 33  MCFLMGLNDSFSQFCAQLLLMEPEPSINRTLSLVAQEAQQRAITSLVPPSPATLLVRNNS 92

Query: 61  -ASSQSAVSGNSSSLASTGKNKERSICTHCGLQGHTVDRCYKLHGYPLGYR---TRSASQ 120
             SS+S  S  SS   S    K++ +CTHCG+ GHT D+CY+LHGYP G+R    +S+  
Sbjct: 93  VGSSRSPTSTTSS--GSQANKKDKPVCTHCGIIGHTTDKCYQLHGYPPGHRFYGQKSSFS 152

Query: 121 SSSSFLTFVNDSSSKGSVVFN--DSLASLNAEQCQGLLNLLHSHLSKAKDPSATTMWKHH 172
           +SS+  +      S  S+  N  DSLAS  A+QCQGLL LL SHLS  +  + T     H
Sbjct: 153 NSSNSRSNSESVKSASSLSSNSLDSLASFTADQCQGLLTLLLSHLSTVQRHTDTDSHTPH 210

BLAST of Moc02g10410 vs. NCBI nr
Match: XP_022148562.1 (uncharacterized protein LOC111017196 [Momordica charantia])

HSP 1 Score: 139.4 bits (350), Expect = 3.1e-29
Identity = 87/183 (47.54%), Postives = 110/183 (60.11%), Query Frame = 0

Query: 1   MMFLMGLNDSFSQLPAQLLLMEPEPSINRAFALVAQESQQRVISSPTVISPTALLTRASS 60
           M FLMGLNDSFSQ+ A LLLM P P+IN AF L+AQE QQR IS  +  + +A  T    
Sbjct: 138 MCFLMGLNDSFSQIRAXLLLMXPPPTINXAFXLIAQEVQQRXISXISXANSSASSTAFXV 197

Query: 61  QSAVSGNSS-----------SLASTGKNKERSICTHCGLQGHTVDRCYKLHGYPLGYRTR 120
               + NSS           SL++ GK KE+S+CTHC L  HTVDRCYKLHGYP GYR  
Sbjct: 198 XGTQNXNSSNLSNSSTSSNRSLSNQGKRKEKSMCTHCXLLXHTVDRCYKLHGYPPGYRNS 257

Query: 121 SASQSSSSFLTFVN-DSSSKGSVVFNDSLASLNAEQCQGLLNLLHSHLSKAKDPSATTMW 172
           +A  +  S     + D++SK +    DSL+ +NA+QC GL  +L SHL+K K  S +   
Sbjct: 258 NARGTHPSPAPAKSADATSKNTAAIPDSLSHINADQCXGLXAILQSHLAKVKTGSESESG 317

BLAST of Moc02g10410 vs. NCBI nr
Match: XP_022141216.1 (uncharacterized protein LOC111011669 [Momordica charantia])

HSP 1 Score: 138.3 bits (347), Expect = 6.8e-29
Identity = 91/173 (52.60%), Postives = 112/173 (64.74%), Query Frame = 0

Query: 1   MMFLMGLNDSFSQLPAQLLLMEPEPSINRAFALVAQESQQR----VISSPTVIS-PTALL 60
           M FLMGLN+SF+Q+ AQLLLMEPE +INRAF+LVAQE +QR      SS    S P A L
Sbjct: 1   MAFLMGLNESFNQVRAQLLLMEPEXTINRAFSLVAQEVEQRTSLATASSAFASSIPAAFL 60

Query: 61  TRASSQSAVSGNSSSLASTGKNKERSICTHCGLQGHTVDRCYKLHGYPLGYRTRSASQSS 120
            R S+    S N++  +S  + KER  CTHC LQGHTVDRCYKLHGYP G+R+ S S +S
Sbjct: 61  ARTSA----SSNNTRASSQPRRKERPYCTHCHLQGHTVDRCYKLHGYPPGFRSTSKSXNS 120

Query: 121 SSF--LTFVNDSSSKGSVVFN---DSLASLNAEQCQGLLNLLHSHLSKAKDPS 164
           SS   +   N S+   SV  +   DSL++  A+Q QGLL  L SHL+  K  S
Sbjct: 121 SSKSPIDATNQSAXTSSVASSSNADSLSNYXADQFQGLLTFLQSHLASMKPTS 169

BLAST of Moc02g10410 vs. NCBI nr
Match: XP_022158736.1 (uncharacterized protein LOC111025199 [Momordica charantia])

HSP 1 Score: 127.9 bits (320), Expect = 9.2e-26
Identity = 72/110 (65.45%), Postives = 83/110 (75.45%), Query Frame = 0

Query: 1   MMFLMGLNDSFSQLPAQLLLMEPEPSINRAFALVAQESQQRVISSPTVISPTALLTRASS 60
           M FLMGLNDSFSQ+ AQLLLMEP PSIN AFAL+AQE QQ  ISSP++ + TA L RASS
Sbjct: 96  MCFLMGLNDSFSQIRAQLLLMEPAPSINWAFALIAQEVQQCAISSPSLANATAFLARASS 155

Query: 61  QSAVSGNSSSLASTGKNKERSICTHCGLQGHTVDRCYKLHGYPLGYRTRS 111
             A   +SSS +S  K KE+++CTHCG+ GH VDRCYKLHGYP     RS
Sbjct: 156 -PAHGPHSSSSSSQYKKKEKTVCTHCGIVGHMVDRCYKLHGYPQDIVPRS 204

BLAST of Moc02g10410 vs. ExPASy TrEMBL
Match: A0A6J1DNP7 (uncharacterized protein LOC111022065 OS=Momordica charantia OX=3673 GN=LOC111022065 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 4.7e-36
Identity = 97/168 (57.74%), Postives = 117/168 (69.64%), Query Frame = 0

Query: 1   MMFLMGLNDSFSQLPAQLLLMEPEPSINRAFALVAQESQQRVISSPTVISPTALLTRASS 60
           M FLMGLN SFSQ+ AQLLLMEP P+INRAFALVAQE QQR IS P+V SPTA   RA+S
Sbjct: 195 MAFLMGLNVSFSQIRAQLLLMEPAPTINRAFALVAQEMQQRSISLPSVTSPTASAVRATS 254

Query: 61  QSAVSGNSSSLASTGKNKERSICTHCGLQGHTVDRCYKLHGYPLGYR-----TRSASQSS 120
            S+ S  +SS AS  K K++S+CTHCG+ GHTVD+CYKLH YP GYR     T S++ +S
Sbjct: 255 NSSNSRLNSSSASHMKRKDKSLCTHCGIYGHTVDKCYKLHEYPPGYRSSVHKTTSSNATS 314

Query: 121 SSFLTFVNDSSSKGSVVFNDSLASLNAEQCQGLLNLLHSHLSKAKDPS 164
           S      + S S      ++SLA+L A+QCQ LL LL SHL+  K  S
Sbjct: 315 SRSAEAPSKSVSATPSGISNSLATLTADQCQRLLTLLQSHLTTTKTAS 362

BLAST of Moc02g10410 vs. ExPASy TrEMBL
Match: A0A6J1DX32 (uncharacterized protein LOC111025254 OS=Momordica charantia OX=3673 GN=LOC111025254 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 6.0e-31
Identity = 93/180 (51.67%), Postives = 113/180 (62.78%), Query Frame = 0

Query: 1   MMFLMGLNDSFSQLPAQLLLMEPEPSINRAFALVAQESQQRVISSPTVISPTALLTR--- 60
           M FLMGLNDSFSQ  AQLLLMEPEPSINR  +LVAQE+QQR I+S    SP  LL R   
Sbjct: 33  MCFLMGLNDSFSQFCAQLLLMEPEPSINRTLSLVAQEAQQRAITSLVPPSPATLLVRNNS 92

Query: 61  -ASSQSAVSGNSSSLASTGKNKERSICTHCGLQGHTVDRCYKLHGYPLGYR---TRSASQ 120
             SS+S  S  SS   S    K++ +CTHCG+ GHT D+CY+LHGYP G+R    +S+  
Sbjct: 93  VGSSRSPTSTTSS--GSQANKKDKPVCTHCGIIGHTTDKCYQLHGYPPGHRFYGQKSSFS 152

Query: 121 SSSSFLTFVNDSSSKGSVVFN--DSLASLNAEQCQGLLNLLHSHLSKAKDPSATTMWKHH 172
           +SS+  +      S  S+  N  DSLAS  A+QCQGLL LL SHLS  +  + T     H
Sbjct: 153 NSSNSRSNSESVKSASSLSSNSLDSLASFTADQCQGLLTLLLSHLSTVQRHTDTDSHTPH 210

BLAST of Moc02g10410 vs. ExPASy TrEMBL
Match: A0A6J1D5E3 (uncharacterized protein LOC111017196 OS=Momordica charantia OX=3673 GN=LOC111017196 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.5e-29
Identity = 87/183 (47.54%), Postives = 110/183 (60.11%), Query Frame = 0

Query: 1   MMFLMGLNDSFSQLPAQLLLMEPEPSINRAFALVAQESQQRVISSPTVISPTALLTRASS 60
           M FLMGLNDSFSQ+ A LLLM P P+IN AF L+AQE QQR IS  +  + +A  T    
Sbjct: 138 MCFLMGLNDSFSQIRAXLLLMXPPPTINXAFXLIAQEVQQRXISXISXANSSASSTAFXV 197

Query: 61  QSAVSGNSS-----------SLASTGKNKERSICTHCGLQGHTVDRCYKLHGYPLGYRTR 120
               + NSS           SL++ GK KE+S+CTHC L  HTVDRCYKLHGYP GYR  
Sbjct: 198 XGTQNXNSSNLSNSSTSSNRSLSNQGKRKEKSMCTHCXLLXHTVDRCYKLHGYPPGYRNS 257

Query: 121 SASQSSSSFLTFVN-DSSSKGSVVFNDSLASLNAEQCQGLLNLLHSHLSKAKDPSATTMW 172
           +A  +  S     + D++SK +    DSL+ +NA+QC GL  +L SHL+K K  S +   
Sbjct: 258 NARGTHPSPAPAKSADATSKNTAAIPDSLSHINADQCXGLXAILQSHLAKVKTGSESESG 317

BLAST of Moc02g10410 vs. ExPASy TrEMBL
Match: A0A6J1CIG1 (uncharacterized protein LOC111011669 OS=Momordica charantia OX=3673 GN=LOC111011669 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 3.3e-29
Identity = 91/173 (52.60%), Postives = 112/173 (64.74%), Query Frame = 0

Query: 1   MMFLMGLNDSFSQLPAQLLLMEPEPSINRAFALVAQESQQR----VISSPTVIS-PTALL 60
           M FLMGLN+SF+Q+ AQLLLMEPE +INRAF+LVAQE +QR      SS    S P A L
Sbjct: 1   MAFLMGLNESFNQVRAQLLLMEPEXTINRAFSLVAQEVEQRTSLATASSAFASSIPAAFL 60

Query: 61  TRASSQSAVSGNSSSLASTGKNKERSICTHCGLQGHTVDRCYKLHGYPLGYRTRSASQSS 120
            R S+    S N++  +S  + KER  CTHC LQGHTVDRCYKLHGYP G+R+ S S +S
Sbjct: 61  ARTSA----SSNNTRASSQPRRKERPYCTHCHLQGHTVDRCYKLHGYPPGFRSTSKSXNS 120

Query: 121 SSF--LTFVNDSSSKGSVVFN---DSLASLNAEQCQGLLNLLHSHLSKAKDPS 164
           SS   +   N S+   SV  +   DSL++  A+Q QGLL  L SHL+  K  S
Sbjct: 121 SSKSPIDATNQSAXTSSVASSSNADSLSNYXADQFQGLLTFLQSHLASMKPTS 169

BLAST of Moc02g10410 vs. ExPASy TrEMBL
Match: A0A6J1E1U3 (uncharacterized protein LOC111025199 OS=Momordica charantia OX=3673 GN=LOC111025199 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 4.4e-26
Identity = 72/110 (65.45%), Postives = 83/110 (75.45%), Query Frame = 0

Query: 1   MMFLMGLNDSFSQLPAQLLLMEPEPSINRAFALVAQESQQRVISSPTVISPTALLTRASS 60
           M FLMGLNDSFSQ+ AQLLLMEP PSIN AFAL+AQE QQ  ISSP++ + TA L RASS
Sbjct: 96  MCFLMGLNDSFSQIRAQLLLMEPAPSINWAFALIAQEVQQCAISSPSLANATAFLARASS 155

Query: 61  QSAVSGNSSSLASTGKNKERSICTHCGLQGHTVDRCYKLHGYPLGYRTRS 111
             A   +SSS +S  K KE+++CTHCG+ GH VDRCYKLHGYP     RS
Sbjct: 156 -PAHGPHSSSSSSQYKKKEKTVCTHCGIVGHMVDRCYKLHGYPQDIVPRS 204

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022154919.19.8e-3657.74uncharacterized protein LOC111022065 [Momordica charantia][more]
XP_022158788.11.2e-3051.67uncharacterized protein LOC111025254 [Momordica charantia][more]
XP_022148562.13.1e-2947.54uncharacterized protein LOC111017196 [Momordica charantia][more]
XP_022141216.16.8e-2952.60uncharacterized protein LOC111011669 [Momordica charantia][more]
XP_022158736.19.2e-2665.45uncharacterized protein LOC111025199 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DNP74.7e-3657.74uncharacterized protein LOC111022065 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J1DX326.0e-3151.67uncharacterized protein LOC111025254 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1D5E31.5e-2947.54uncharacterized protein LOC111017196 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
A0A6J1CIG13.3e-2952.60uncharacterized protein LOC111011669 OS=Momordica charantia OX=3673 GN=LOC111011... [more]
A0A6J1E1U34.4e-2665.45uncharacterized protein LOC111025199 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34222:SF6OS02G0671800 PROTEINcoord: 1..156
NoneNo IPR availablePANTHERPTHR34222FAMILY NOT NAMEDcoord: 1..156

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc02g10410.1Moc02g10410.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding