Moc02g10340 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc02g10340
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Unknown protein
Location	chr2: 7341070 .. 7341655 (-)
RNA-Seq Expression	Moc02g10340
Synteny	Moc02g10340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTCCAACGTCAGCTCCGCATCGGAGAACAACAATTGCCAATTGGAGTCTGGACACGGTAGGACTGAAATTAAATATTGATGTTGCGTGTGGAGTTAATTCGACTGGGTTAGGCTTCCTTCTTTGTGATGAATCTGGCCGTTTATTGGCAGCATGATGTCGGTCGGTACCTCTTCCTTACACACCTTTACTTGTTGAGCTTCTGGCCATTCGTGAAGGTCTCTACTTCGCAATTTCTCTGGGCTATTCGCATTTAACAGTTGAATCGGACTATCTCACAGCCATTTCTCTTCTTCGAGGTGATTTGGAAACCCTCAGTCCTGAACGGATTTGGATTCACGACATCGGTGCTCTTGCTCTCGATTTAGATGCCTGCGACTTCATGCATGTTCTCTGGGAAAGCAACCGTTCGGCTGACATCTTGGTTAAACAGAGTCTTCATGCCTCTAGTTCTTCTTTGTGGACTTGTAACTTTTCCTTTTGGCTTATTCCTATCTTTGAAAGGGAAAGTCCTACCCCTCTTGTTGCTTCATGGCCGTTGATTCTTAATGAAAGCACTATTTACTTAAAAAAACAAAAATAA

mRNA sequence

ATGTTCTCCAACGTCAGCTCCGCATCGGAGAACAACAATTGCCAATTGGAGTCTGGACACGGTCTCTACTTCGCAATTTCTCTGGGCTATTCGCATTTAACAGTTGAATCGGACTATCTCACAGCCATTTCTCTTCTTCGAGGTGATTTGGAAACCCTCAGTCCTGAACGGATTTGGATTCACGACATCGGTGCTCTTGCTCTCGATTTAGATGCCTGCGACTTCATGCATGTTCTCTGGGAAAGCAACCGTTCGGCTGACATCTTGGTTAAACAGAGTCTTCATGCCTCTAGTTCTTCTTTGTGGACTTGTAACTTTTCCTTTTGGCTTATTCCTATCTTTGAAAGGGAAAGTCCTACCCCTCTTGTTGCTTCATGGCCGTTGATTCTTAATGAAAGCACTATTTACTTAAAAAAACAAAAATAA

Coding sequence (CDS)

ATGTTCTCCAACGTCAGCTCCGCATCGGAGAACAACAATTGCCAATTGGAGTCTGGACACGGTCTCTACTTCGCAATTTCTCTGGGCTATTCGCATTTAACAGTTGAATCGGACTATCTCACAGCCATTTCTCTTCTTCGAGGTGATTTGGAAACCCTCAGTCCTGAACGGATTTGGATTCACGACATCGGTGCTCTTGCTCTCGATTTAGATGCCTGCGACTTCATGCATGTTCTCTGGGAAAGCAACCGTTCGGCTGACATCTTGGTTAAACAGAGTCTTCATGCCTCTAGTTCTTCTTTGTGGACTTGTAACTTTTCCTTTTGGCTTATTCCTATCTTTGAAAGGGAAAGTCCTACCCCTCTTGTTGCTTCATGGCCGTTGATTCTTAATGAAAGCACTATTTACTTAAAAAAACAAAAATAA

Protein sequence

MFSNVSSASENNNCQLESGHGLYFAISLGYSHLTVESDYLTAISLLRGDLETLSPERIWIHDIGALALDLDACDFMHVLWESNRSADILVKQSLHASSSSLWTCNFSFWLIPIFERESPTPLVASWPLILNESTIYLKKQK

Homology

[Close]

BLAST of Moc02g10340 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 68.2 bits (165), Expect = 6.6e-08
Identity = 39/108 (36.11%), Postives = 59/108 (54.63%), Query Frame = 0


Query: 14   CQLESGHGLYFAISLGYSHLTVESDYLTAISLLRGDLETLSPERIWIHDIGALALDLDAC 73
            C LE   GL FA +  ++HL VESD L AI L+R ++ T   E+ W+ +I AL       
Sbjct: 1349 CILE---GLKFAAASNFTHLEVESDSLLAIQLIRNEIHTRGDEQNWVMEIQALTCCFAFI 1408

Query: 74   DFMHVLWESNRSADILVKQSLHASSSS-LWTCNFSFWLIPIFERESPT 121
             F H   + NR+A  L K  + + S++  W  NF  WL+ + +R+ P+
Sbjct: 1409 SFSHSSRQCNRAAHGLAKWGITSPSATYAWLFNFPTWLLDLVQRDFPS 1453

[Close]

BLAST of Moc02g10340 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.2e-08
Identity = 39/108 (36.11%), Postives = 59/108 (54.63%), Query Frame = 0


Query: 14   CQLESGHGLYFAISLGYSHLTVESDYLTAISLLRGDLETLSPERIWIHDIGALALDLDAC 73
            C LE   GL FA +  ++HL VESD L AI L+R ++ T   E+ W+ +I AL       
Sbjct: 1349 CILE---GLKFAAASNFTHLEVESDSLLAIQLIRNEIHTRGDEQNWVMEIQALTCCFAFI 1408

Query: 74   DFMHVLWESNRSADILVKQSLHASSSS-LWTCNFSFWLIPIFERESPT 121
             F H   + NR+A  L K  + + S++  W  NF  WL+ + +R+ P+
Sbjct: 1409 SFSHSSRQCNRAAHGLAKWGITSPSATYAWLFNFPTWLLDLVQRDFPS 1453

[Close]

BLAST of Moc02g10340 vs. ExPASy TrEMBL
Match: A0A6J1DZK3 (uncharacterized protein LOC111024968 OS=Momordica charantia OX=3673 GN=LOC111024968 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 8.2e-04
Identity = 33/91 (36.26%), Postives = 45/91 (49.45%), Query Frame = 0


Query: 21  GLYFAISLGYSHLTVESDYLTAISLLRGDLETLSPERI-WIHDIGALALDLDACDFMHVL 80
           GL  A  LG   + VE+D L A++L+ GD      E + W+ DI A A D     F HV 
Sbjct: 125 GLSLATRLGVHRVVVETDSLEALNLI-GDKSPWKGEAVSWVEDIRAFARDFQEICFQHVF 184

Query: 81  WESNRSADILVKQSLHASSSSLWTCNFSFWL 111
            ESN  A  L ++++      LW  +F  WL
Sbjct: 185 RESNAVAYHLGRETISLRCGFLWRLDFPIWL 214

The following BLAST results are available for this feature:

BLAST of Moc02g10340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158377.1	6.6e-08	36.11	uncharacterized protein LOC111024874 [Momordica charantia]	[more]

BLAST of Moc02g10340 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc02g10340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DX30	3.2e-08	36.11	uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1DZK3	8.2e-04	36.26	uncharacterized protein LOC111024968 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]

BLAST of Moc02g10340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 20..92 e-value: 4.4E-10 score: 39.4
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 20..91 e-value: 7.66811E-13 score: 59.25

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc02g10340.1	Moc02g10340.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity