Moc02g09970 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc02g09970
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	40S ribosomal protein S12
Location	chr2: 7036598 .. 7041279 (+)
RNA-Seq Expression	Moc02g09970
Synteny	Moc02g09970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGGGTAAGTGAAATTTTGTATATTGAACAAGCTTTCAACTTCCCTGATAATTCCCATTTCTTTTGTGAAAATTATCGAAGTGGTTGTTTATATTTTCTGAGTTATTGAACAGTTGCCTCTTCTTTCGTTTTTGTTTGCTTCCTTTTCAGTATTTAGTTATCGACGATGCCCTGGTTTTTTGTTTTATTTTAAAGTTGAATCTGCAGCTTGTAATCAACTATTCGAGTGCTCACTGTTCTAGAGTGTGGATAAGTAAGAAGTTGTAAGTGGAAACTTCATTGACGAAGGTGACGAAACAATAAATCTTTTTCCCTTGAGATGAAAATTATATGCTTTGGGCTTTTGGGTCATATATAATATTGAACTTTGAAGTTCAATATGTGATTCGTAACATCATTTCATTGGGGATTGAAAAATAGTTACTGAGCAGCCAAGATCCCTGTGTGATTTGTAACATCCTAGAAGTGAAAAGCTATTGAGGCTTCTTCTGTTAGTGGCTTAATATTTGCTGCAATGTTTATATAATTTTCTTCAATTGCTTCAAAGAATTATGCCATAGAGTAATATTATATTCCCTCTCAACCTTATTTCGTTTGCAGTGATGAAGGTGCAGTTGTGGCTGAGGCTCCCGCCCCAGCTCTTGGTGAGCCTATGGACATCGAGACGGCTTTGCAACTTGTTCTTAGGAAATCATTAGCCCATGGTGGACTTGTTAGAGGCCTACATGAGAGCGCTAAAGCAATTGAGAAGCATGCTGCTCAGCTATGCGTCTTGGGAGAAGACTGCAACCAGCCAGATTATGTAAAATTAGTGAAGGCACTTTGTGGGGAGCATCACGTCAGCTTGATGACAGTTCCAAGTGCAAAGACTCTTGGCGAGTGGGCCGGTGTAAGTGATTTTTTTAACAAGATATAGAGCTTTTCATTGATAAATGATAATAAACAAAAATGTTTAAAAGATATGAACTCCGGGAGGAGTAAAAAGAGGAAAAAAACGGAAAGCATAGTAAAGCTAGGCTGGACTAGAGATATAAAAACATCCCAATTAATACAAATACCATTGTAGATAGCAAACTAACTCCAATGTAAATTTTAAGCATGTTTATTGAGATTAAATGGTTTATCTTATCTTTTGCTTTTTTCCCATCATCTCTGGCATCACTATATAAATATACCATAGTTATTCTACCATGATTGAACCTATGACTTTTGACGTTTAGTTAGTGTTTTACATGCTCGAGATCATATAAAGATGTTCTCGAGCATGTAAAATGCATAGAAATCTTCATTTTCCTCCTAACATGTCTTGCTATCAATACCATTGTGAAAGTTTGTTATTGCCTCTAATATTTGCATTCTACACCATCTGTTGAGTTCGATAACAAGGTGTGATTAATATACATATAACAATATTACTTGCAAAAGATTGCTCATATGGAGTTCAAAGTTAAGTAATTTTCTTTGTATTCGGTATAATGCAGCTATGCAAGATTGATTCTGAAGGAAAGGCTAGGAAGGTTGTTGGGTGTTCTTGTGTTGTAGTTAAGGTACGCTTATGATCACTTCGAGAGAAAATGTTCTATTCCTTTTTTGTTTGCAAAATGTCGTTTTTGTTTACTTTAATTTTGAATGTGTTATTCCCAGGACTTTGGGGAGGATCACGAGGCACTTCACATTGTCCAGAAGCATGTTAGTTCAAGTTGATTATCTCAATCGTGTTTGTTGGTCTCACTAAGAAAGTTTTTGATCTTTAGTTTTGTTTAGGTTGGTTCCCTGTTGCTCTGCTGAACACGTTTACCCTACAATGTTTTTCTTTGTTTATTTATTGGAAAGATTTCTGGCAAACAGAACAATTTATTCATCAAGAGTCTCCTTGCCAAGGGTAAGAGGGAATTGAATTTTAACATCTCCTTATGCTGAGTTATTATGGTTTACCTCTTTTCATTCTCTTTGGAGATTAATGCAACAGTCTCGTGGTTTTTTTTTTTTTAATCATAAAACACACTAGGTGATCATCCTGGATCATTGTTCTGACTTCTGTGTGGATAACTTCTAGACTTGAATGAGTTTCAAATGCCGAGATCATATTTAATGGAAAAATTAAACGTGTTGATTTATACTTGGGGTTAGCCAACTTTAGAGAGGGCAAAGAGTGTTTTTAGCCTATTAAAAGTATTTCAGTCTTTAATTATCTGAAATAATTGTTTTTTTTACTAAGAGTTTTTCATTTCAAACATTTTAAATTCATCCTCGGCATACTACAATCTCTTATAATAGAAATTCAATAATTTATGGACAAATTTATTGATGTGGAAACTTTCAAACTAACCTTTTGTATTAGTTGATGGTGGTGAGATCAATTGAACTTTTTACAGCAGTTAATTTCAAGTTGAGGGAGAATGCATCATTTTTACTGGGCTAGTTGGTACTCGCTCTTTTCCTAAACGTATGAGATTCAAATTTTCATACCTTCATGTACTAAAAAAATTCAAGGAGAGAGAGAATACTTCATTGATTTGTTTTTAATATTGTGTGACAATATCAGTCCTACTTTATTTAACTTGGTTTGCTGTCGCTGAAGAACTAGTAAGGCTGCCTTGCTCAAATCATAACGAAAACTTAAGCAAAATGCCAATTTGTAGAGGTAATGACACTAAAATTTCAGAAGACTTGGTGACAAATAAATGATGCGATTTAGTGTGGATTTTATATACAAGAGATCTATGAAGACTGTAAGTGAAATATAAACCAAACCCAAGATTTCAGGGGAACAAGTTCGATGTAACATCGTAAAAATCTTTTTCATAGAAAAGAAAACATTCCTTCATGTATAAGGTTTTATTTCTTATCCATCTTTTATTTAAAAGAGGGATTTTAAAGCAAGACAAGATCTCTGAATTCCTGACCTGGTTGTGGTAGAATCAACTAGAGGAGGAATCAATAGTAAAAAAACATTTGAGTTTACTTCGTGGTTTGAAGACTTGTCTGTCTGATGGTTAATTTTAAAGAGTATTTGGGTCCGAGTGCGGTGCCCTTGTGTATAGGAGAGTAAAGATTCGACTCCCGTTGTAAAAAAAAGAAAAAAGAAAAAAAGAGAGTATTTGGGGCAGGGATTGGTAAGTGGGGGCTTTGGGGACTGTTAGTTTGGTGTTTGAGTACACTTCTTTCACCCCATGCCCATTGGTCAAGTTCCATTCAAGTCATAGTAGCCCAAGCTGTTGCACTGAGACACACTGCATCACAGGGAAACTGAAGAAAATAAAACCTCCATGTGAATCTGCTCATAATGAAAGAGCCAATTCCTGCATCCCTGGACCCCAAATGTCTCAGTCGGTGAATACCATCGGCCCTTGCCTGTTCATGGACCCTGTCAGTTTTGGAACCATGACGGTGGCTTGGACCATTTTTTACTTGCTTAATGCCGTAACATTGTCGGTTCGGTTGTCTTCTTCTTCATGATATTCTGACCAAATGCTGTTAGGTCATATGGTTGTTTTGAAAGAATGTCAAGTTTTCCTCGAGGTAATGGCTGGAGGGCTTATTTTACTGTTATGGCATATGATTTAGTGATTCCCAATTTAAAGTCATCAAATTCCAACTTGAGATTCGTTCATAGCCACATTGTGTGAAAGATTTTAACTTAGAAGGGCAAGTTTGGACACAGAGAAAAGAAAGAACATAAAATCATCTTGGAGCATGCGAAGTTTTTCTAAGAGAATGTTTGGTTGGTATTGCTCTAATATGTTTACAGAAAATCGATATGCAATGATGTTCTATTCTACTTCGATTCTCTTCTAACAAAAATGAAAAGAGAAGTCGGTGAAAATTTTCGACTATCTTTTGGTTTTGTGGCATTGTAGTTTTTGTTCTTTCTTTCATGAGGAATGCAACCTTGAAGTGAGATCAATGAACGCATCTTCCCTGCAGGGGATTGTCAAACCCCCAGTTGGATGTTTGAATCCAAACTCTTCTTCAGCTCTGTTGAGTAATCTTACAAATGAAGGATGGTTCAAGAACGATATTGGCACCACGAATCGCTTCCTTTGTAACTCTCCCACATAGACTGCATGTGGCCTTTGGGAACGTTGGACCGACATCTTGATGAAATAGATTGCATTGTGAGAATTTTCTTGGTGTTAAGGAGAATCGAAGGCAGACGAACTCCCATGTTTGAACTTGATTTAGGCGATGGAAGAACGAGCGAGTTTAGTGAGAAGTTCCGGAACTTGAATGAGAATTTGTTGATATCTGGTGTGGATTTATAGAATGAAAATAGAGAGGATATGAGCACAAAAGAGTAGGAGATGGGTGTCAGAGGGGACCCATTTTCATCAAATGCTCACATGGGATTGCTCTATTGGTTGAAGCACCCTCTTGTCTATATGGACCAACTTTACTTCTATATGCCCCATATTTTGGTGGGTAGACCCCTCTTGCACCAGAAAAGAAAGTCCAAACAAGTGGCCAAGAAAATTTAAAAACTTTCTTGGCAGATCCATTTGACAAGCTTTCCAAATTATCAACAAGTTACTGTTTCAATGGGGCCAATGCAATGGATGAGAATAGACTAGCAAATAGTGAAGCTAGGCCCGAATTTGAGTCGAAAAATGAGACAGCTCCACAGCTCGTCAGCGTGCAAGTCATAAAAGATGTTGTAATTTCATCAGCATATGGGTAG

mRNA sequence

ATGTCAGGTGATGAAGGTGCAGTTGTGGCTGAGGCTCCCGCCCCAGCTCTTGGTGAGCCTATGGACATCGAGACGGCTTTGCAACTTGTTCTTAGGAAATCATTAGCCCATGGTGGACTTGTTAGAGGCCTACATGAGAGCGCTAAAGCAATTGAGAAGCATGCTGCTCAGCTATGCGTCTTGGGAGAAGACTGCAACCAGCCAGATTATGTAAAATTAGTGAAGGCACTTTGTGGGGAGCATCACGTCAGCTTGATGACAGTTCCAAGTGCAAAGACTCTTGGCGAGTGGGCCGGTCTATGCAAGATTGATTCTGAAGGAAAGGCTAGGAAGGTTGTTGGGTGTTCTTGTGTTGTAGTTAAGGACTTTGGGGAGGATCACGAGGCACTTCACATTGTCCAGAAGCATGGGATTGTCAAACCCCCAGTTGGATGTTTGAATCCAAACTCTTCTTCAGCTCTGTTGAGTAATCTTACAAATGAAGGATGGAGAATCGAAGGCAGACGAACTCCCATGTTTGAACTTGATTTAGGCGATGGAAGAACGAGCGAGTTTAGTGAGAAGTTCCGGAACTTGAATGAGAATTTGTTGATATCTGATCCATTTGACAAGCTTTCCAAATTATCAACAAGTTACTGTTTCAATGGGGCCAATGCAATGGATGAGAATAGACTAGCAAATAGTGAAGCTAGGCCCGAATTTGAGTCGAAAAATGAGACAGCTCCACAGCTCGTCAGCGTGCAAGTCATAAAAGATGTTGTAATTTCATCAGCATATGGGTAG

Coding sequence (CDS)

ATGTCAGGTGATGAAGGTGCAGTTGTGGCTGAGGCTCCCGCCCCAGCTCTTGGTGAGCCTATGGACATCGAGACGGCTTTGCAACTTGTTCTTAGGAAATCATTAGCCCATGGTGGACTTGTTAGAGGCCTACATGAGAGCGCTAAAGCAATTGAGAAGCATGCTGCTCAGCTATGCGTCTTGGGAGAAGACTGCAACCAGCCAGATTATGTAAAATTAGTGAAGGCACTTTGTGGGGAGCATCACGTCAGCTTGATGACAGTTCCAAGTGCAAAGACTCTTGGCGAGTGGGCCGGTCTATGCAAGATTGATTCTGAAGGAAAGGCTAGGAAGGTTGTTGGGTGTTCTTGTGTTGTAGTTAAGGACTTTGGGGAGGATCACGAGGCACTTCACATTGTCCAGAAGCATGGGATTGTCAAACCCCCAGTTGGATGTTTGAATCCAAACTCTTCTTCAGCTCTGTTGAGTAATCTTACAAATGAAGGATGGAGAATCGAAGGCAGACGAACTCCCATGTTTGAACTTGATTTAGGCGATGGAAGAACGAGCGAGTTTAGTGAGAAGTTCCGGAACTTGAATGAGAATTTGTTGATATCTGATCCATTTGACAAGCTTTCCAAATTATCAACAAGTTACTGTTTCAATGGGGCCAATGCAATGGATGAGAATAGACTAGCAAATAGTGAAGCTAGGCCCGAATTTGAGTCGAAAAATGAGACAGCTCCACAGCTCGTCAGCGTGCAAGTCATAAAAGATGTTGTAATTTCATCAGCATATGGGTAG

Protein sequence

MSGDEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCGEHHVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHGIVKPPVGCLNPNSSSALLSNLTNEGWRIEGRRTPMFELDLGDGRTSEFSEKFRNLNENLLISDPFDKLSKLSTSYCFNGANAMDENRLANSEARPEFESKNETAPQLVSVQVIKDVVISSAYG

Homology

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BLAST of Moc02g09970 vs. NCBI nr
Match: XP_022146157.1 (40S ribosomal protein S12-like [Momordica charantia])

HSP 1 Score: 278.5 bits (711), Expect = 5.9e-71
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MSGDEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSGDEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSGDEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCGEHHVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCGEHHVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCGEHHVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKH 137
           KDFGEDHEALHIVQKH
Sbjct: 121 KDFGEDHEALHIVQKH 136

[Close]

BLAST of Moc02g09970 vs. NCBI nr
Match: XP_022152391.1 (40S ribosomal protein S12-like [Momordica charantia])

HSP 1 Score: 271.9 bits (694), Expect = 5.6e-69
Identity = 133/136 (97.79%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 1   MSGDEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSGDEGAVV EAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSGDEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCGEHHVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALC EH+VSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKH 137
           KDFGEDHEALHIVQKH
Sbjct: 121 KDFGEDHEALHIVQKH 136

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BLAST of Moc02g09970 vs. NCBI nr
Match: XP_004147008.1 (40S ribosomal protein S12 [Cucumis sativus] >XP_008457630.1 PREDICTED: 40S ribosomal protein S12-like [Cucumis melo] >XP_031736838.1 40S ribosomal protein S12 [Cucumis sativus] >KAA0045670.1 40S ribosomal protein S12 [Cucumis melo var. makuwa] >KGN61872.1 hypothetical protein Csa_006022 [Cucumis sativus] >TYJ99613.1 40S ribosomal protein S12 [Cucumis melo var. makuwa])

HSP 1 Score: 270.0 bits (689), Expect = 2.1e-68
Identity = 132/136 (97.06%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 1   MSGDEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MS DEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCGEHHVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALC EH+V+LMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKH 137
           KDFGEDHEALHIVQKH
Sbjct: 121 KDFGEDHEALHIVQKH 136

[Close]

BLAST of Moc02g09970 vs. NCBI nr
Match: XP_023512603.1 (40S ribosomal protein S12-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 268.5 bits (685), Expect = 6.2e-68
Identity = 131/136 (96.32%), Postives = 133/136 (97.79%), Query Frame = 0


Query: 1   MSGDEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MS DEGAVV EAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCGEHHVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALC EH+V+LMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKH 137
           KDFGEDHEALHIVQKH
Sbjct: 121 KDFGEDHEALHIVQKH 136

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BLAST of Moc02g09970 vs. NCBI nr
Match: KAG6571063.1 (40S ribosomal protein S12, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 268.5 bits (685), Expect = 6.2e-68
Identity = 131/136 (96.32%), Postives = 133/136 (97.79%), Query Frame = 0


Query: 1   MSGDEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MS DEGAVV EAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 48  MSADEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 107

Query: 61  LGEDCNQPDYVKLVKALCGEHHVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALC EH+V+LMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 108 LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 167

Query: 121 KDFGEDHEALHIVQKH 137
           KDFGEDHEALHIVQKH
Sbjct: 168 KDFGEDHEALHIVQKH 183

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BLAST of Moc02g09970 vs. ExPASy Swiss-Prot
Match: Q9XHS0 (40S ribosomal protein S12 OS=Hordeum vulgare OX=4513 GN=RPS12 PE=2 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 9.0e-54
Identity = 99/126 (78.57%), Postives = 115/126 (91.27%), Query Frame = 0


Query: 11  EAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDY 70
           EAP P LGEPMD+ TALQLV++KS AH GLV+GL E+AK+IEKHAAQLCVL EDC+QPDY
Sbjct: 14  EAPTPILGEPMDLMTALQLVMKKSSAHDGLVKGLREAAKSIEKHAAQLCVLAEDCDQPDY 73

Query: 71  VKLVKALCGEHHVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEAL 130
           VKLVKALC EH+V L+TVPSAKTLGEWAGLCKID+EGKARKVVGCSC+VVKD+GE+ E L
Sbjct: 74  VKLVKALCAEHNVHLVTVPSAKTLGEWAGLCKIDTEGKARKVVGCSCIVVKDYGEESEGL 133

Query: 131 HIVQKH 137
           +IVQ++
Sbjct: 134 NIVQQY 139

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BLAST of Moc02g09970 vs. ExPASy Swiss-Prot
Match: Q9SKZ3 (40S ribosomal protein S12-2 OS=Arabidopsis thaliana OX=3702 GN=RPS12C PE=1 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 1.6e-50
Identity = 98/140 (70.00%), Postives = 112/140 (80.00%), Query Frame = 0


Query: 1   MSGDEGAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MSGDE       P    A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  A
Sbjct: 1   MSGDEAVAAPVVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCGEHHVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QLCVL EDCNQPDYVKLVKALC +H + L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKH 137
           C+V+KDFGE+  AL+IV+KH
Sbjct: 121 CLVIKDFGEETTALNIVKKH 140

[Close]

BLAST of Moc02g09970 vs. ExPASy Swiss-Prot
Match: Q9S9P1 (40S ribosomal protein S12-1 OS=Arabidopsis thaliana OX=3702 GN=RPS12A PE=2 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 3.9e-49
Identity = 100/140 (71.43%), Postives = 110/140 (78.57%), Query Frame = 0


Query: 1   MSGDEGAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MSGDE A V   P      A+ E MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  A
Sbjct: 1   MSGDEAAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCGEHHVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QL VL EDCNQPDYVKLVKALC +H V L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKH 137
           C+VVKDFGE+  AL IV KH
Sbjct: 121 CLVVKDFGEETTALSIVNKH 140

[Close]

BLAST of Moc02g09970 vs. ExPASy Swiss-Prot
Match: Q76I81 (40S ribosomal protein S12 OS=Bos taurus OX=9913 GN=RPS12 PE=2 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 3.8e-36
Identity = 69/121 (57.02%), Postives = 92/121 (76.03%), Query Frame = 0


Query: 16  ALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVK 75
           A G  MD+ TALQ VL+ +L H GL RG+ E+AKA++K  A LCVL  +C++P YVKLV+
Sbjct: 7   AAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVE 66

Query: 76  ALCGEHHVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQK 135
           ALC EH ++L+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G++ +A  ++++
Sbjct: 67  ALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEE 126

Query: 136 H 137
           +
Sbjct: 127 Y 127

[Close]

BLAST of Moc02g09970 vs. ExPASy Swiss-Prot
Match: P25398 (40S ribosomal protein S12 OS=Homo sapiens OX=9606 GN=RPS12 PE=1 SV=3)

HSP 1 Score: 153.3 bits (386), Expect = 3.8e-36
Identity = 69/121 (57.02%), Postives = 92/121 (76.03%), Query Frame = 0


Query: 16  ALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVK 75
           A G  MD+ TALQ VL+ +L H GL RG+ E+AKA++K  A LCVL  +C++P YVKLV+
Sbjct: 7   AAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVE 66

Query: 76  ALCGEHHVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQK 135
           ALC EH ++L+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G++ +A  ++++
Sbjct: 67  ALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEE 126

Query: 136 H 137
           +
Sbjct: 127 Y 127

[Close]

BLAST of Moc02g09970 vs. ExPASy TrEMBL
Match: A0A6J1CYT4 (40S ribosomal protein S12 OS=Momordica charantia OX=3673 GN=LOC111015439 PE=3 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 2.9e-71
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MSGDEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSGDEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSGDEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCGEHHVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCGEHHVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCGEHHVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKH 137
           KDFGEDHEALHIVQKH
Sbjct: 121 KDFGEDHEALHIVQKH 136

[Close]

BLAST of Moc02g09970 vs. ExPASy TrEMBL
Match: A0A6J1DHK5 (40S ribosomal protein S12 OS=Momordica charantia OX=3673 GN=LOC111020127 PE=3 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 2.7e-69
Identity = 133/136 (97.79%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 1   MSGDEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSGDEGAVV EAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSGDEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCGEHHVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALC EH+VSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKH 137
           KDFGEDHEALHIVQKH
Sbjct: 121 KDFGEDHEALHIVQKH 136

[Close]

BLAST of Moc02g09970 vs. ExPASy TrEMBL
Match: A0A5D3BJY5 (40S ribosomal protein S12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G001870 PE=3 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 1.0e-68
Identity = 132/136 (97.06%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 1   MSGDEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MS DEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCGEHHVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALC EH+V+LMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKH 137
           KDFGEDHEALHIVQKH
Sbjct: 121 KDFGEDHEALHIVQKH 136

[Close]

BLAST of Moc02g09970 vs. ExPASy TrEMBL
Match: A0A0A0LM61 (40S ribosomal protein S12 OS=Cucumis sativus OX=3659 GN=Csa_2G258680 PE=3 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 1.0e-68
Identity = 132/136 (97.06%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 1   MSGDEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MS DEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCGEHHVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALC EH+V+LMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKH 137
           KDFGEDHEALHIVQKH
Sbjct: 121 KDFGEDHEALHIVQKH 136

[Close]

BLAST of Moc02g09970 vs. ExPASy TrEMBL
Match: A0A1S3C6L3 (40S ribosomal protein S12 OS=Cucumis melo OX=3656 GN=LOC103497279 PE=3 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 1.0e-68
Identity = 132/136 (97.06%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 1   MSGDEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MS DEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCGEHHVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALC EH+V+LMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKH 137
           KDFGEDHEALHIVQKH
Sbjct: 121 KDFGEDHEALHIVQKH 136

[Close]

BLAST of Moc02g09970 vs. TAIR 10
Match: AT2G32060.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 201.1 bits (510), Expect = 1.1e-51
Identity = 98/140 (70.00%), Postives = 112/140 (80.00%), Query Frame = 0


Query: 1   MSGDEGAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MSGDE       P    A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  A
Sbjct: 1   MSGDEAVAAPVVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCGEHHVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QLCVL EDCNQPDYVKLVKALC +H + L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKH 137
           C+V+KDFGE+  AL+IV+KH
Sbjct: 121 CLVIKDFGEETTALNIVKKH 140

[Close]

BLAST of Moc02g09970 vs. TAIR 10
Match: AT2G32060.3 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 201.1 bits (510), Expect = 1.1e-51
Identity = 98/140 (70.00%), Postives = 112/140 (80.00%), Query Frame = 0


Query: 1   MSGDEGAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MSGDE       P    A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  A
Sbjct: 1   MSGDEAVAAPVVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCGEHHVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QLCVL EDCNQPDYVKLVKALC +H + L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKH 137
           C+V+KDFGE+  AL+IV+KH
Sbjct: 121 CLVIKDFGEETTALNIVKKH 140

[Close]

BLAST of Moc02g09970 vs. TAIR 10
Match: AT2G32060.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 201.1 bits (510), Expect = 1.1e-51
Identity = 98/140 (70.00%), Postives = 112/140 (80.00%), Query Frame = 0


Query: 1   MSGDEGAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MSGDE       P    A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  A
Sbjct: 1   MSGDEAVAAPVVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCGEHHVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QLCVL EDCNQPDYVKLVKALC +H + L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKH 137
           C+V+KDFGE+  AL+IV+KH
Sbjct: 121 CLVIKDFGEETTALNIVKKH 140

[Close]

BLAST of Moc02g09970 vs. TAIR 10
Match: AT1G15930.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 196.4 bits (498), Expect = 2.8e-50
Identity = 100/140 (71.43%), Postives = 110/140 (78.57%), Query Frame = 0


Query: 1   MSGDEGAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MSGDE A V   P      A+ E MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  A
Sbjct: 1   MSGDEAAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCGEHHVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QL VL EDCNQPDYVKLVKALC +H V L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKH 137
           C+VVKDFGE+  AL IV KH
Sbjct: 121 CLVVKDFGEETTALSIVNKH 140

[Close]

BLAST of Moc02g09970 vs. TAIR 10
Match: AT1G15930.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 196.4 bits (498), Expect = 2.8e-50
Identity = 100/140 (71.43%), Postives = 110/140 (78.57%), Query Frame = 0


Query: 1   MSGDEGAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MSGDE A V   P      A+ E MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  A
Sbjct: 1   MSGDEAAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCGEHHVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QL VL EDCNQPDYVKLVKALC +H V L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKH 137
           C+VVKDFGE+  AL IV KH
Sbjct: 121 CLVVKDFGEETTALSIVNKH 140

The following BLAST results are available for this feature:

BLAST of Moc02g09970 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022146157.1	5.9e-71	100.00	40S ribosomal protein S12-like [Momordica charantia]	[more]
XP_022152391.1	5.6e-69	97.79	40S ribosomal protein S12-like [Momordica charantia]	[more]
XP_004147008.1	2.1e-68	97.06	40S ribosomal protein S12 [Cucumis sativus] >XP_008457630.1 PREDICTED: 40S ribos...	[more]
XP_023512603.1	6.2e-68	96.32	40S ribosomal protein S12-like [Cucurbita pepo subsp. pepo]	[more]
KAG6571063.1	6.2e-68	96.32	40S ribosomal protein S12, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Moc02g09970 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XHS0	9.0e-54	78.57	40S ribosomal protein S12 OS=Hordeum vulgare OX=4513 GN=RPS12 PE=2 SV=1	[more]
Q9SKZ3	1.6e-50	70.00	40S ribosomal protein S12-2 OS=Arabidopsis thaliana OX=3702 GN=RPS12C PE=1 SV=1	[more]
Q9S9P1	3.9e-49	71.43	40S ribosomal protein S12-1 OS=Arabidopsis thaliana OX=3702 GN=RPS12A PE=2 SV=1	[more]
Q76I81	3.8e-36	57.02	40S ribosomal protein S12 OS=Bos taurus OX=9913 GN=RPS12 PE=2 SV=1	[more]
P25398	3.8e-36	57.02	40S ribosomal protein S12 OS=Homo sapiens OX=9606 GN=RPS12 PE=1 SV=3	[more]

BLAST of Moc02g09970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CYT4	2.9e-71	100.00	40S ribosomal protein S12 OS=Momordica charantia OX=3673 GN=LOC111015439 PE=3 SV...	[more]
A0A6J1DHK5	2.7e-69	97.79	40S ribosomal protein S12 OS=Momordica charantia OX=3673 GN=LOC111020127 PE=3 SV...	[more]
A0A5D3BJY5	1.0e-68	97.06	40S ribosomal protein S12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A0A0LM61	1.0e-68	97.06	40S ribosomal protein S12 OS=Cucumis sativus OX=3659 GN=Csa_2G258680 PE=3 SV=1	[more]
A0A1S3C6L3	1.0e-68	97.06	40S ribosomal protein S12 OS=Cucumis melo OX=3656 GN=LOC103497279 PE=3 SV=1	[more]

BLAST of Moc02g09970 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G32060.1	1.1e-51	70.00	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT2G32060.3	1.1e-51	70.00	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT2G32060.2	1.1e-51	70.00	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT1G15930.2	2.8e-50	71.43	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT1G15930.1	2.8e-50	71.43	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000530	Ribosomal protein S12e	PRINTS	PR00972	RIBSOMALS12E	coord: 110..123 score: 81.17 coord: 85..106 score: 57.85 coord: 44..60 score: 48.13 coord: 30..43 score: 54.55
IPR000530	Ribosomal protein S12e	PANTHER	PTHR11843	40S RIBOSOMAL PROTEIN S12	coord: 8..136
IPR000530	Ribosomal protein S12e	PROSITE	PS01189	RIBOSOMAL_S12E	coord: 26..44
IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45	PFAM	PF01248	Ribosomal_L7Ae	coord: 26..119 e-value: 1.4E-25 score: 88.8
IPR029064	50S ribosomal protein L30e-like	GENE3D	3.30.1330.30		coord: 8..138 e-value: 9.3E-52 score: 175.9
IPR029064	50S ribosomal protein L30e-like	SUPERFAMILY	55315	L30e-like	coord: 20..135
None	No IPR available	PANTHER	PTHR11843:SF20	40S RIBOSOMAL PROTEIN S12	coord: 8..136

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc02g09970.1	Moc02g09970.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome