Moc02g08860 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc02g08860
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	THO complex subunit 4A-like
Location	chr2: 6265031 .. 6267464 (-)
RNA-Seq Expression	Moc02g08860
Synteny	Moc02g08860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCTCCTCTGGATATGAGCCTCGACGATATCATAAAGAACAACAAAAAATCCAGATCCGGAAATTCCAGAGGTGGTCGCGGCCGACCTTCCGGACCCGGTCCCGTCCGCCGATTTCCCAATCGTGCCGCTAATCGCACGCCTTATGCCGCACCCAAGGTATGGCTTCGAGTTCTAGGTCGCTGTATCTCCTCTTTTCCCTTTCGAATTTTTTTTAATTTTTGTTTTGATTTGTGAATCTTGCGATAGGCACCGGAAACGGCTTGGCAGCATGATATGTTTATCGATCAGACTTCTGGATTCGCTGTGCAAGCGGGGCGAGCCTCTGCCATTCAGACTGGGACTAAGCTTTACATATCTAATTTGGATTACGGCGTTTCCAATGAAGATATCAAGGTATTTATTACTCTTGTGAATGAATAAAAAGAGAGGAGAGATAGATAGTTTCTTTTTGCCTACTGAAAGTGGTGGTGCTTACAGGAACTTTTTTCAGAAGTTGGTGATATGAAACACTACTCAATCCATTATGATAAGAGTGGAAGATCCAAGGTATCCTACGAAGCCTGGCATAATACTGGTTCTTGTGAATTCATTATATTGGTCGAAGTTTAGAAGTCCTCTTTTCCATAGGGAACGGCAGAAGTAGTTTTCTCACGACGAGTAGATGCTGTTGCGGCTGTCAAGAAGTACAACAACGTGCAGCTTGATGGAAAACCAATGAAGATAGAGATTGTTGGAACTAATATTGCGACCCCTGCTGCTGTTCCTACTGCCGCTGTAGCCCCCTTCGAAAATTTAAACGGGTTTCCTAGAAGGTACTGGATCTTATTCTAAGTGGCAGAAAATAGGGCATGAGTGATCTGCTTGATGAATATAATTGGCTGCAAGCACTAACACAATGTTCCAAAACTTATTATGAATCGCAAGTTGTGTTCGTATGTCATGTGATATTTGCTGTTTTTAGTTTCTATAAAGCCTTTGTTGATATAACTATTAATATTTTCCTTGTATTCACGAGCTTTTGTTCTGCTTTTATAACTATTAATATTTGCTGTTTTTAGTTTCTATAAAGCCTTTGTTCCTATAACTATTAATATTTTCCTTGTATTCACGAGCTTTTGTTCTGTTTTTAAGAATCTCCACTGCAGCCTGCCCATGGCTGCTACTTAATGTATCTAGTACATTTTAGGTTGTAATATGCTATTGTATTTCTAGTCTTGAAATCTGCCTCTAGGCTCATTATGCACTTGTATATATTTATAAACTTTATTCTGGTTCTTTTTTATTTTCAGCTGTGTTTGCTTGATTCTGGTGGCATTCATTTTATAATTAGCAGTACCATTGGCTATGGCATTGTATATCGTATGAACATTGTTTTTGACGTGGAACAGGCAGCAAGGTAGGGGTGGTCTGCCATCACGTCAACGTGGCGGAGGCGGAGGAGGTCGTGGTTTTGGAAGAGGGCGTGGGAGAGGAAGAGGTCCCAGTGAAAAAGTTTCTGCCGAAGATCTTGATGCGGACTTAGAGAAGTATCATGCCGAATCTATGCAAATAAATTAGTGGATGCTTATATGCTTTGATGCAGCCACCCCCCATCTGTTTGCTGTATCGCTACCATTGTCTTACCTTCGCAGAAATGGGCTATAGTGTTCCTTAGAATTGGTTTGAATTTCTTTACAACTTTTTGGGCTTTTGTTGTTTAGCTTTCATATGACTTCAGCATGGTAATGTAATTGACGAACAGAAGTCAGTGTGTACTCTGCTTTCATTCACTAAGTCCTTTCTGTTTCATTTAATGAGTTGGGAATCGAAGTGGATCTATTACCCTTTTGCCTCCCGATCACATCTGCAAGGATGACATTGGTTGGAATAAAATGCCACCCACCGCTGCAAATTATACAACAAATGAGTTGCTGTTCCCAATTGAGGTAAGGCATCTTCATTTCTGTACAGTCGATTTCTGAATTCTTTTCTAATAATTTCTAACAAATTCGTTATTTCTCTTTTAATGTTTTCTCAGGGAACTTCGACTCGATTAAAAACGAATATTTAACCATGAAGTGTTGAACATTTCAAGGGTTGGCTAACGTGCTAAAAGACAAATAGTCTTGATAGCTATGGGATCCGACTTGGTCGAATTATTTTAAGAAACTACCAAGCTGAATTTGTTGCCTTTTGGTCTTACGGAATCCTCATCTCTGCCTGCGTTTTATGGTAAAAATGCCTGGTTACAGGTGATATTCTTGTTTTAAAAGTAATTGTTGATCAAACATGTGCAACGTGGTGGTATTCTACTGCTGTTCTTGTGGAAAAATCCGCAGAGCAATTTGCCGCAAACATGGGGGCGGCGGGCATATTTATGAGGTACCATACCATCACTGGTGAGGACTGGACTGGTCAAGTTTTTCGATATCTGCTCGAGTTCTGCTAG

mRNA sequence

ATGGCTGCTCCTCTGGATATGAGCCTCGACGATATCATAAAGAACAACAAAAAATCCAGATCCGGAAATTCCAGAGGTGGTCGCGGCCGACCTTCCGGACCCGGTCCCGTCCGCCGATTTCCCAATCGTGCCGCTAATCGCACGCCTTATGCCGCACCCAAGGCACCGGAAACGGCTTGGCAGCATGATATGTTTATCGATCAGACTTCTGGATTCGCTGTGCAAGCGGGGCGAGCCTCTGCCATTCAGACTGGGACTAAGCTTTACATATCTAATTTGGATTACGGCGTTTCCAATGAAGATATCAAGGAACTTTTTTCAGAAGTTGGTGATATGAAACACTACTCAATCCATTATGATAAGAGTGGAAGATCCAAGGGAACGGCAGAAGTAGTTTTCTCACGACGAGTAGATGCTGTTGCGGCTGTCAAGAAGTACAACAACGTGCAGCTTGATGGAAAACCAATGAAGATAGAGATTGTTGGAACTAATATTGCGACCCCTGCTGCTGTTCCTACTGCCGCTGTAGCCCCCTTCGAAAATTTAAACGGGTTTCCTAGAAGGCAGCAAGGTAGGGGTGGTCTGCCATCACGTCAACGTGGCGGAGGCGGAGGAGGTCGTGGTTTTGGAAGAGGGCGTGGGAGAGGAAGAGGTCCCAGTGAAAAAGTTTCTGCCGAAGATCTTGATGCGGACTTAGAGAACCACCCCCCATCTGTTTGCTGTATCGCTACCATTGTCTTACCTTCGCAGAAATGGGCTATAGTGTTCCTTAGAATTGGTGATATTCTTGTTTTAAAAGTAATTGTTGATCAAACATGTGCAACGTGGTGGTATTCTACTGCTGTTCTTGTGGAAAAATCCGCAGAGCAATTTGCCGCAAACATGGGGGCGGCGGGCATATTTATGAGGTACCATACCATCACTGGTGAGGACTGGACTGGTCAAGTTTTTCGATATCTGCTCGAGTTCTGCTAG

Coding sequence (CDS)

ATGGCTGCTCCTCTGGATATGAGCCTCGACGATATCATAAAGAACAACAAAAAATCCAGATCCGGAAATTCCAGAGGTGGTCGCGGCCGACCTTCCGGACCCGGTCCCGTCCGCCGATTTCCCAATCGTGCCGCTAATCGCACGCCTTATGCCGCACCCAAGGCACCGGAAACGGCTTGGCAGCATGATATGTTTATCGATCAGACTTCTGGATTCGCTGTGCAAGCGGGGCGAGCCTCTGCCATTCAGACTGGGACTAAGCTTTACATATCTAATTTGGATTACGGCGTTTCCAATGAAGATATCAAGGAACTTTTTTCAGAAGTTGGTGATATGAAACACTACTCAATCCATTATGATAAGAGTGGAAGATCCAAGGGAACGGCAGAAGTAGTTTTCTCACGACGAGTAGATGCTGTTGCGGCTGTCAAGAAGTACAACAACGTGCAGCTTGATGGAAAACCAATGAAGATAGAGATTGTTGGAACTAATATTGCGACCCCTGCTGCTGTTCCTACTGCCGCTGTAGCCCCCTTCGAAAATTTAAACGGGTTTCCTAGAAGGCAGCAAGGTAGGGGTGGTCTGCCATCACGTCAACGTGGCGGAGGCGGAGGAGGTCGTGGTTTTGGAAGAGGGCGTGGGAGAGGAAGAGGTCCCAGTGAAAAAGTTTCTGCCGAAGATCTTGATGCGGACTTAGAGAACCACCCCCCATCTGTTTGCTGTATCGCTACCATTGTCTTACCTTCGCAGAAATGGGCTATAGTGTTCCTTAGAATTGGTGATATTCTTGTTTTAAAAGTAATTGTTGATCAAACATGTGCAACGTGGTGGTATTCTACTGCTGTTCTTGTGGAAAAATCCGCAGAGCAATTTGCCGCAAACATGGGGGCGGCGGGCATATTTATGAGGTACCATACCATCACTGGTGAGGACTGGACTGGTCAAGTTTTTCGATATCTGCTCGAGTTCTGCTAG

Protein sequence

MAAPLDMSLDDIIKNNKKSRSGNSRGGRGRPSGPGPVRRFPNRAANRTPYAAPKAPETAWQHDMFIDQTSGFAVQAGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKHYSIHYDKSGRSKGTAEVVFSRRVDAVAAVKKYNNVQLDGKPMKIEIVGTNIATPAAVPTAAVAPFENLNGFPRRQQGRGGLPSRQRGGGGGGRGFGRGRGRGRGPSEKVSAEDLDADLENHPPSVCCIATIVLPSQKWAIVFLRIGDILVLKVIVDQTCATWWYSTAVLVEKSAEQFAANMGAAGIFMRYHTITGEDWTGQVFRYLLEFC

Homology

[Close]

BLAST of Moc02g08860 vs. NCBI nr
Match: XP_022148377.1 (THO complex subunit 4A-like [Momordica charantia])

HSP 1 Score: 453.4 bits (1165), Expect = 1.7e-123
Identity = 233/235 (99.15%), Postives = 234/235 (99.57%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGGRGRPSGPGPVRRFPNRAANRTPYAAPKAPETAW 60
           MAAPLDMSLDDIIKNNKKSRSGNSRGGRGRPSGPGPVRRFPNRAANRTPYAAPKAPETAW
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGGRGRPSGPGPVRRFPNRAANRTPYAAPKAPETAW 60

Query: 61  QHDMFIDQTSGFAVQAGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKHYSIHYD 120
           QHDMFIDQTSGFAVQAGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKHYSIHYD
Sbjct: 61  QHDMFIDQTSGFAVQAGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKHYSIHYD 120

Query: 121 KSGRSKGTAEVVFSRRVDAVAAVKKYNNVQLDGKPMKIEIVGTNIATPAAVPTAAVAPFE 180
           KSGRSKGTAEVVFSRRVDAVAAVKKYNNVQLDGKPMKIEIVGTNIATPAAVPTAAVAPFE
Sbjct: 121 KSGRSKGTAEVVFSRRVDAVAAVKKYNNVQLDGKPMKIEIVGTNIATPAAVPTAAVAPFE 180

Query: 181 NLNGFPRRQQGRGGLPSRQRGGGGGGRGFGRGRGRGRGPSEKVSAEDLDADLENH 236
           NLNGFPRRQQGRGGLPSRQRGGGGGGRGFGRGRGRGRGPSEKVSAEDLDADLE +
Sbjct: 181 NLNGFPRRQQGRGGLPSRQRGGGGGGRGFGRGRGRGRGPSEKVSAEDLDADLEKY 235

[Close]

BLAST of Moc02g08860 vs. NCBI nr
Match: XP_038901991.1 (THO complex subunit 4A-like [Benincasa hispida])

HSP 1 Score: 397.1 bits (1019), Expect = 1.4e-106
Identity = 210/235 (89.36%), Postives = 214/235 (91.06%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGGRGRPSGPGPVRRFPNRAANRTPYAAPKAPETAW 60
           MAAPLDMSLDDIIKNNKKSRSGNSR GRGR SGPGPVRRFPNRAANRTPY+APKAPET W
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGNSR-GRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTW 60

Query: 61  QHDMFIDQTSGFAVQAGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKHYSIHYD 120
           QHDMF D  SGFA Q GRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMK Y IHYD
Sbjct: 61  QHDMFADPGSGFAGQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYGIHYD 120

Query: 121 KSGRSKGTAEVVFSRRVDAVAAVKKYNNVQLDGKPMKIEIVGTNIATPAAVPTAAVAPFE 180
           KSGRSKGTAEVVFSRR+DAVAAVKKYNNVQLDGKPMKIEIVGTNI+TPA  PTAAV PFE
Sbjct: 121 KSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFE 180

Query: 181 NLNGFPRRQQGRGGLPSRQRGGGGGGRGFGRGRGRGRGPSEKVSAEDLDADLENH 236
           NLNG PRRQQGRGG PSRQR     GRGFGRGRGRGRGPSEKVSAEDLDADLE +
Sbjct: 181 NLNGAPRRQQGRGGPPSRQR-----GRGFGRGRGRGRGPSEKVSAEDLDADLEKY 229

[Close]

BLAST of Moc02g08860 vs. NCBI nr
Match: XP_004143092.1 (THO complex subunit 4A [Cucumis sativus] >KGN47175.1 hypothetical protein Csa_020836 [Cucumis sativus])

HSP 1 Score: 392.9 bits (1008), Expect = 2.7e-105
Identity = 207/235 (88.09%), Postives = 213/235 (90.64%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGGRGRPSGPGPVRRFPNRAANRTPYAAPKAPETAW 60
           MAAPLDMSLDDIIKNNKKSRSGNSR GRGR SGPGPVRRFPNRAANRTPY+APKAPET W
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGNSR-GRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTW 60

Query: 61  QHDMFIDQTSGFAVQAGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKHYSIHYD 120
           QHDMF D +SGF VQ GRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMK + IHYD
Sbjct: 61  QHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYD 120

Query: 121 KSGRSKGTAEVVFSRRVDAVAAVKKYNNVQLDGKPMKIEIVGTNIATPAAVPTAAVAPFE 180
           KSGRSKGTAEVVFSRR+DAVAAVKKYNNVQLDGKPMKIEIVGTNI+TPA  PTAAV PFE
Sbjct: 121 KSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFE 180

Query: 181 NLNGFPRRQQGRGGLPSRQRGGGGGGRGFGRGRGRGRGPSEKVSAEDLDADLENH 236
           N NG PRRQQGRGG PSRQR     G GFGRGRGRGRGPSEKVSAEDLDADLE +
Sbjct: 181 NSNGAPRRQQGRGGPPSRQR-----GHGFGRGRGRGRGPSEKVSAEDLDADLEKY 229

[Close]

BLAST of Moc02g08860 vs. NCBI nr
Match: XP_008448384.1 (PREDICTED: THO complex subunit 4A-like isoform X1 [Cucumis melo] >XP_008448386.1 PREDICTED: THO complex subunit 4A-like isoform X1 [Cucumis melo] >XP_008448387.1 PREDICTED: THO complex subunit 4A-like isoform X1 [Cucumis melo] >XP_016900540.1 PREDICTED: THO complex subunit 4A-like isoform X1 [Cucumis melo])

HSP 1 Score: 390.2 bits (1001), Expect = 1.7e-104
Identity = 206/235 (87.66%), Postives = 213/235 (90.64%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGGRGRPSGPGPVRRFPNRAANRTPYAAPKAPETAW 60
           MAAPLDMSLDDIIKNNKKSRSGNSR GRGR SGPGPVRRFPNRAA+RTPY+APKAPET W
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGNSR-GRGRGSGPGPVRRFPNRAASRTPYSAPKAPETTW 60

Query: 61  QHDMFIDQTSGFAVQAGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKHYSIHYD 120
           QHDMF D +SGF  Q GRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMK + IHYD
Sbjct: 61  QHDMFADPSSGFIGQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYD 120

Query: 121 KSGRSKGTAEVVFSRRVDAVAAVKKYNNVQLDGKPMKIEIVGTNIATPAAVPTAAVAPFE 180
           KSGRSKGTAEVVFSRR+DAVAAVKKYNNVQLDGKPMKIEIVGTNI+TPA  PTAAV PFE
Sbjct: 121 KSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFE 180

Query: 181 NLNGFPRRQQGRGGLPSRQRGGGGGGRGFGRGRGRGRGPSEKVSAEDLDADLENH 236
           N NG PRRQQGRGG PSRQR     GRGFGRGRGRGRGPSEKVSAEDLDADLE +
Sbjct: 181 NSNGAPRRQQGRGGPPSRQR-----GRGFGRGRGRGRGPSEKVSAEDLDADLEKY 229

[Close]

BLAST of Moc02g08860 vs. NCBI nr
Match: KAG6605476.1 (THO complex subunit 4A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 388.3 bits (996), Expect = 6.6e-104
Identity = 207/236 (87.71%), Postives = 211/236 (89.41%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGGRGRPSGPGPVRRFPNRAANRTPYAAPKAPETAW 60
           MAAPLDMSLDDIIKNNKKSRSG SR GRGR SGPGPVRR PNRAANRTPY+APKAPET W
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGISR-GRGRGSGPGPVRRIPNRAANRTPYSAPKAPETTW 60

Query: 61  QHDMFIDQTSGFAVQAGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKHYSIHYD 120
           QHDMF+DQ +GF VQAGRAS+IQTGTKLYISNLDYGVSNEDIKELFSEVGDMK Y IHYD
Sbjct: 61  QHDMFVDQGAGFPVQAGRASSIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYGIHYD 120

Query: 121 KSGRSKGTAEVVFSRRVDAVAAVKKYNNVQLDGKPMKIEIVGTNIATPAAVPTAAVAPFE 180
           KSGRSKGTAEVVFSRR DA AAVKKYNNVQLDGKPMKIEIVGTNIAT A  P AAV PFE
Sbjct: 121 KSGRSKGTAEVVFSRRGDAAAAVKKYNNVQLDGKPMKIEIVGTNIATHAVGPPAAVNPFE 180

Query: 181 NLNGFPRRQQGRGGLPSRQRGGGGGGRGFGRGRGRGRGPSEKVSAEDLDADLENHP 237
           N NG PRRQQGRGGLPSRQR    GGRG GRGRGRGRGPSEKVSAEDLDADLE  P
Sbjct: 181 NFNGAPRRQQGRGGLPSRQR----GGRGSGRGRGRGRGPSEKVSAEDLDADLEKLP 231

[Close]

BLAST of Moc02g08860 vs. ExPASy Swiss-Prot
Match: Q8L773 (THO complex subunit 4A OS=Arabidopsis thaliana OX=3702 GN=ALY1 PE=1 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 4.8e-65
Identity = 155/243 (63.79%), Postives = 186/243 (76.54%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSG-NSRGGRGRPSGPGPVRR-FPNRAANRT-PYAAPKAPE 60
           M+  LDMSLDD+I  N+KSR G     G G  SGPGP RR  PNR + R+ PY + KAPE
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSAKAPE 60

Query: 61  TAWQHDMFIDQTSGFAVQAGRASA-IQTGTKLYISNLDYGVSNEDIKELFSEVGDMKHYS 120
           + W HDMF D++     ++GR+SA I+TGTKLYISNLDYGV NEDIKELF+EVG++K Y+
Sbjct: 61  STWGHDMFSDRSEDH--RSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYT 120

Query: 121 IHYDKSGRSKGTAEVVFSRRVDAVAAVKKYNNVQLDGKPMKIEIVGTNIATPAAVPTAAV 180
           +H+D+SGRSKGTAEVV+SRR DA+AAVKKYN+VQLDGKPMKIEIVGTN+ T AA P+   
Sbjct: 121 VHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQT-AAAPSGRP 180

Query: 181 APFENLNGFP-RRQQGRGGLPSRQRGG--GGGGR-GFGRGRGRGRGPSEKVSAEDLDADL 236
           A   N NG P R  QGRGG   +QRGG  GGGGR G GRGR  G+GP+EK+SAEDLDADL
Sbjct: 181 AN-GNSNGAPWRGGQGRGG---QQRGGGRGGGGRGGGGRGRRPGKGPAEKISAEDLDADL 236

[Close]

BLAST of Moc02g08860 vs. ExPASy Swiss-Prot
Match: Q8L719 (THO complex subunit 4B OS=Arabidopsis thaliana OX=3702 GN=ALY2 PE=1 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 3.4e-58
Identity = 157/285 (55.09%), Postives = 179/285 (62.81%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKK---SR------SGNSRGGR-GRPSGPGPVRRFPNRAANRT-P 60
           M+  LDMSLDDIIK+N+K   SR       GN+ GGR G  S  GP RRF NR   RT P
Sbjct: 1   MSGGLDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTAP 60

Query: 61  YAAP----KAPETAWQHDMFIDQTSGFA-------VQAGRASAIQTGTKLYISNLDYGVS 120
           Y+ P    +A +  WQ+D+F    S  A          G  S+I+TGTKLYISNLDYGVS
Sbjct: 61  YSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGVS 120

Query: 121 NEDIKELFSEVGDMKHYSIHYDKSGRSKGTAEVVFSRRVDAVAAVKKYNNVQLDGKPMKI 180
           NEDIKELFSEVGD+K Y IHYD+SGRSKGTAEVVFSRR DA+AAVK+YNNVQLDGK MKI
Sbjct: 121 NEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMKI 180

Query: 181 EIVGTNIATPAAVPTAAVA--PF----------ENLNGFPR-------RQQGRGGLPSRQ 236
           EIVGTN++ P A+P  A A  PF          EN NG          R +GRGG   R 
Sbjct: 181 EIVGTNLSAP-ALPILATAQIPFPTNGILGNFNENFNGNFNGNFNGNFRGRGRGGFMGRP 240

[Close]

BLAST of Moc02g08860 vs. ExPASy Swiss-Prot
Match: Q6NQ72 (THO complex subunit 4D OS=Arabidopsis thaliana OX=3702 GN=ALY4 PE=1 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.2e-39
Identity = 122/287 (42.51%), Postives = 160/287 (55.75%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGN---SRG-GRGRPS---GPGPVRRFPNRAANRTPYA-- 60
           M+  L+M+LD+I+K  K +RSG    SRG GRGR     G GP RR P  A N  P +  
Sbjct: 1   MSGALNMTLDEIVKRGKTARSGGRGISRGRGRGRGGGGRGAGPARRGP-LAVNARPSSFT 60

Query: 61  ----APKAPETAWQHDMFIDQTSGFAVQAGRASAIQTGTKLYISNLDYGVSNEDIKELFS 120
                 +     WQ  +F D      ++A  AS ++ GT+L+++NLD GV+NEDI+ELFS
Sbjct: 61  INKPVRRVRSLPWQSGLFED-----GLRAAGASGVEVGTRLHVTNLDQGVTNEDIRELFS 120

Query: 121 EVGDMKHYSIHYDKSGRSKGTAEVVFSRRVDAVAAVKKYNNVQLDGKPMKIEIVGTNIAT 180
           E+G+++ Y+IHYDK+GR  GTAEVV+ RR DA  A+KKYNNV LDG+PM++EI+G N ++
Sbjct: 121 EIGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALKKYNNVLLDGRPMRLEILGGNNSS 180

Query: 181 PAAVPTAAVAPFENLNGFPRR----QQGRGG--------------------LP------- 236
            A +          LNG  +R    QQG GG                    LP       
Sbjct: 181 EAPLSGRVNVNVTGLNGRLKRTVVIQQGGGGRGRVRGGRGGRGPAPTVSRRLPIHNQQGG 240

[Close]

BLAST of Moc02g08860 vs. ExPASy Swiss-Prot
Match: B5FXN8 (THO complex subunit 4 OS=Taeniopygia guttata OX=59729 GN=ALYREF PE=2 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.7e-38
Identity = 120/263 (45.63%), Postives = 151/263 (57.41%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGGRG--------RPSGP------------GPVRRF 60
           MA  +DMSLDDIIK N+  R G SRGGRG        R  GP            GPVR  
Sbjct: 1   MADKMDMSLDDIIKLNRSQR-GASRGGRGGRGRGGTARGGGPGRGGVGGGRAGGGPVRNR 60

Query: 61  PNRA----ANR-TPYAAPKAPETAWQHDMFIDQTSGFAVQAGRASAIQTGTKLYISNLDY 120
           P  A     NR  PY+ PK     WQHD+F    SGF   AG    ++TG KL +SNLD+
Sbjct: 61  PVMARGGGRNRPAPYSRPKQLPEKWQHDLF---DSGFGAGAG----VETGGKLLVSNLDF 120

Query: 121 GVSNEDIKELFSEVGDMKHYSIHYDKSGRSKGTAEVVFSRRVDAVAAVKKYNNVQLDGKP 180
           GVS+ DI+ELF+E G +K  ++HYD+SGRS GTA+V F R+ DA+ A+K+YN V LDG+P
Sbjct: 121 GVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRP 180

Query: 181 MKIEIVGTNIATPAAVPTAAVAPFENLNGFPRRQQGRGGLPSRQRGGGGGGRGF-----G 234
           M I++V + I T    P  +V    N  G  R +   GG      GGGG  RG      G
Sbjct: 181 MNIQLVTSQIDTQRR-PAQSV----NRGGMTRNRGVLGGF-----GGGGNRRGTRGGNRG 240

[Close]

BLAST of Moc02g08860 vs. ExPASy Swiss-Prot
Match: Q3T0I4 (THO complex subunit 4 OS=Bos taurus OX=9913 GN=ALYREF PE=2 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 8.6e-38
Identity = 115/267 (43.07%), Postives = 152/267 (56.93%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSG----------NSRGGRGRPS--------GPGPVRRFPN 60
           MA  +DMSLDDIIK N+  R G           S+GGRG  +        G GP+R  P 
Sbjct: 1   MADKMDMSLDDIIKLNRSQRGGRGGGRGRGRAGSQGGRGGGAQAAARVNRGGGPIRNRPA 60

Query: 61  RA--------ANR-TPYAAPKAPETAWQHDMFIDQTSGFAVQAGRASAIQTGTKLYISNL 120
            A         NR  PY+ PK     WQHD+F    SGF    G  + ++TG KL +SNL
Sbjct: 61  IARGAAGGGGRNRPAPYSRPKQLPDKWQHDLF---DSGF----GGGAGVETGGKLLVSNL 120

Query: 121 DYGVSNEDIKELFSEVGDMKHYSIHYDKSGRSKGTAEVVFSRRVDAVAAVKKYNNVQLDG 180
           D+GVS+ DI+ELF+E G +K  ++HYD+SGRS GTA+V F R+ DA+ A+K+YN V LDG
Sbjct: 121 DFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDG 180

Query: 181 KPMKIEIVGTNIATPAAVPTAAVAPFENLN-GFPRRQQGRGGLPSRQRGGGGG------G 234
           +PM I++V + I T          P +++N G   R +G GG      GGGGG      G
Sbjct: 181 RPMNIQLVTSQIDTQR-------RPAQSVNRGGMTRNRGSGGF-----GGGGGTRRGTRG 240

[Close]

BLAST of Moc02g08860 vs. ExPASy TrEMBL
Match: A0A6J1D4W8 (THO complex subunit 4A-like OS=Momordica charantia OX=3673 GN=LOC111017043 PE=4 SV=1)

HSP 1 Score: 453.4 bits (1165), Expect = 8.1e-124
Identity = 233/235 (99.15%), Postives = 234/235 (99.57%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGGRGRPSGPGPVRRFPNRAANRTPYAAPKAPETAW 60
           MAAPLDMSLDDIIKNNKKSRSGNSRGGRGRPSGPGPVRRFPNRAANRTPYAAPKAPETAW
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGGRGRPSGPGPVRRFPNRAANRTPYAAPKAPETAW 60

Query: 61  QHDMFIDQTSGFAVQAGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKHYSIHYD 120
           QHDMFIDQTSGFAVQAGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKHYSIHYD
Sbjct: 61  QHDMFIDQTSGFAVQAGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKHYSIHYD 120

Query: 121 KSGRSKGTAEVVFSRRVDAVAAVKKYNNVQLDGKPMKIEIVGTNIATPAAVPTAAVAPFE 180
           KSGRSKGTAEVVFSRRVDAVAAVKKYNNVQLDGKPMKIEIVGTNIATPAAVPTAAVAPFE
Sbjct: 121 KSGRSKGTAEVVFSRRVDAVAAVKKYNNVQLDGKPMKIEIVGTNIATPAAVPTAAVAPFE 180

Query: 181 NLNGFPRRQQGRGGLPSRQRGGGGGGRGFGRGRGRGRGPSEKVSAEDLDADLENH 236
           NLNGFPRRQQGRGGLPSRQRGGGGGGRGFGRGRGRGRGPSEKVSAEDLDADLE +
Sbjct: 181 NLNGFPRRQQGRGGLPSRQRGGGGGGRGFGRGRGRGRGPSEKVSAEDLDADLEKY 235

[Close]

BLAST of Moc02g08860 vs. ExPASy TrEMBL
Match: A0A0A0KBU2 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G193610 PE=4 SV=1)

HSP 1 Score: 392.9 bits (1008), Expect = 1.3e-105
Identity = 207/235 (88.09%), Postives = 213/235 (90.64%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGGRGRPSGPGPVRRFPNRAANRTPYAAPKAPETAW 60
           MAAPLDMSLDDIIKNNKKSRSGNSR GRGR SGPGPVRRFPNRAANRTPY+APKAPET W
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGNSR-GRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTW 60

Query: 61  QHDMFIDQTSGFAVQAGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKHYSIHYD 120
           QHDMF D +SGF VQ GRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMK + IHYD
Sbjct: 61  QHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYD 120

Query: 121 KSGRSKGTAEVVFSRRVDAVAAVKKYNNVQLDGKPMKIEIVGTNIATPAAVPTAAVAPFE 180
           KSGRSKGTAEVVFSRR+DAVAAVKKYNNVQLDGKPMKIEIVGTNI+TPA  PTAAV PFE
Sbjct: 121 KSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFE 180

Query: 181 NLNGFPRRQQGRGGLPSRQRGGGGGGRGFGRGRGRGRGPSEKVSAEDLDADLENH 236
           N NG PRRQQGRGG PSRQR     G GFGRGRGRGRGPSEKVSAEDLDADLE +
Sbjct: 181 NSNGAPRRQQGRGGPPSRQR-----GHGFGRGRGRGRGPSEKVSAEDLDADLEKY 229

[Close]

BLAST of Moc02g08860 vs. ExPASy TrEMBL
Match: A0A1S3BK70 (THO complex subunit 4A-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490589 PE=4 SV=1)

HSP 1 Score: 390.2 bits (1001), Expect = 8.5e-105
Identity = 206/235 (87.66%), Postives = 213/235 (90.64%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGGRGRPSGPGPVRRFPNRAANRTPYAAPKAPETAW 60
           MAAPLDMSLDDIIKNNKKSRSGNSR GRGR SGPGPVRRFPNRAA+RTPY+APKAPET W
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGNSR-GRGRGSGPGPVRRFPNRAASRTPYSAPKAPETTW 60

Query: 61  QHDMFIDQTSGFAVQAGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKHYSIHYD 120
           QHDMF D +SGF  Q GRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMK + IHYD
Sbjct: 61  QHDMFADPSSGFIGQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYD 120

Query: 121 KSGRSKGTAEVVFSRRVDAVAAVKKYNNVQLDGKPMKIEIVGTNIATPAAVPTAAVAPFE 180
           KSGRSKGTAEVVFSRR+DAVAAVKKYNNVQLDGKPMKIEIVGTNI+TPA  PTAAV PFE
Sbjct: 121 KSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFE 180

Query: 181 NLNGFPRRQQGRGGLPSRQRGGGGGGRGFGRGRGRGRGPSEKVSAEDLDADLENH 236
           N NG PRRQQGRGG PSRQR     GRGFGRGRGRGRGPSEKVSAEDLDADLE +
Sbjct: 181 NSNGAPRRQQGRGGPPSRQR-----GRGFGRGRGRGRGPSEKVSAEDLDADLEKY 229

[Close]

BLAST of Moc02g08860 vs. ExPASy TrEMBL
Match: A0A6J1L1M6 (THO complex subunit 4A-like OS=Cucurbita maxima OX=3661 GN=LOC111499593 PE=4 SV=1)

HSP 1 Score: 387.9 bits (995), Expect = 4.2e-104
Identity = 206/235 (87.66%), Postives = 211/235 (89.79%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGGRGRPSGPGPVRRFPNRAANRTPYAAPKAPETAW 60
           MAAPLDMSLDDIIKNNKKSRSG SR GRGR SGPGPVRR PNRAANRTPY+APKAPET W
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGISR-GRGRGSGPGPVRRIPNRAANRTPYSAPKAPETTW 60

Query: 61  QHDMFIDQTSGFAVQAGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKHYSIHYD 120
           QHDMF+DQ +GF VQAGRAS+IQTGTKLYISNLDYGVSNEDIKELFSEVGDMK Y IHYD
Sbjct: 61  QHDMFVDQGAGFPVQAGRASSIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYGIHYD 120

Query: 121 KSGRSKGTAEVVFSRRVDAVAAVKKYNNVQLDGKPMKIEIVGTNIATPAAVPTAAVAPFE 180
           KSGRSKGTAEVVFSRR DA AAVKKYNNVQLDGKPMKIEIVGTNIAT A  P AAV PFE
Sbjct: 121 KSGRSKGTAEVVFSRRGDAAAAVKKYNNVQLDGKPMKIEIVGTNIATHAVGPPAAVNPFE 180

Query: 181 NLNGFPRRQQGRGGLPSRQRGGGGGGRGFGRGRGRGRGPSEKVSAEDLDADLENH 236
           N NG PRRQQGRGGLPSRQR    GGRG GRGRGRGRGPSEKVSAEDLDADLE +
Sbjct: 181 NFNGVPRRQQGRGGLPSRQR----GGRGSGRGRGRGRGPSEKVSAEDLDADLEKY 230

[Close]

BLAST of Moc02g08860 vs. ExPASy TrEMBL
Match: A0A6J1G721 (THO complex subunit 4A-like OS=Cucurbita moschata OX=3662 GN=LOC111451345 PE=4 SV=1)

HSP 1 Score: 387.5 bits (994), Expect = 5.5e-104
Identity = 206/235 (87.66%), Postives = 211/235 (89.79%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGGRGRPSGPGPVRRFPNRAANRTPYAAPKAPETAW 60
           MAAPLDMSLDDIIKNNKKSRSG SR GRGR SGPGPVRR PNRAANRTPY+APKAPET W
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGISR-GRGRGSGPGPVRRIPNRAANRTPYSAPKAPETTW 60

Query: 61  QHDMFIDQTSGFAVQAGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKHYSIHYD 120
           QHDMF+DQ +GF VQAGRAS+IQTGTKLYISNLDYGVSNEDIKELFSEVGDMK Y IHYD
Sbjct: 61  QHDMFVDQGAGFPVQAGRASSIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYGIHYD 120

Query: 121 KSGRSKGTAEVVFSRRVDAVAAVKKYNNVQLDGKPMKIEIVGTNIATPAAVPTAAVAPFE 180
           KSGRSKGTAEVVFSRR DA AAVKKYNNVQLDGKPMKIEIVGTNIAT A  P AAV PFE
Sbjct: 121 KSGRSKGTAEVVFSRRGDAAAAVKKYNNVQLDGKPMKIEIVGTNIATHAVGPPAAVNPFE 180

Query: 181 NLNGFPRRQQGRGGLPSRQRGGGGGGRGFGRGRGRGRGPSEKVSAEDLDADLENH 236
           N NG PRRQQGRGGLPSRQR    GGRG GRGRGRGRGPSEKVSAEDLDADLE +
Sbjct: 181 NFNGAPRRQQGRGGLPSRQR----GGRGSGRGRGRGRGPSEKVSAEDLDADLEKY 230

[Close]

BLAST of Moc02g08860 vs. TAIR 10
Match: AT5G59950.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 249.6 bits (636), Expect = 3.4e-66
Identity = 155/243 (63.79%), Postives = 186/243 (76.54%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSG-NSRGGRGRPSGPGPVRR-FPNRAANRT-PYAAPKAPE 60
           M+  LDMSLDD+I  N+KSR G     G G  SGPGP RR  PNR + R+ PY + KAPE
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSAKAPE 60

Query: 61  TAWQHDMFIDQTSGFAVQAGRASA-IQTGTKLYISNLDYGVSNEDIKELFSEVGDMKHYS 120
           + W HDMF D++     ++GR+SA I+TGTKLYISNLDYGV NEDIKELF+EVG++K Y+
Sbjct: 61  STWGHDMFSDRSEDH--RSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYT 120

Query: 121 IHYDKSGRSKGTAEVVFSRRVDAVAAVKKYNNVQLDGKPMKIEIVGTNIATPAAVPTAAV 180
           +H+D+SGRSKGTAEVV+SRR DA+AAVKKYN+VQLDGKPMKIEIVGTN+ T AA P+   
Sbjct: 121 VHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQT-AAAPSGRP 180

Query: 181 APFENLNGFP-RRQQGRGGLPSRQRGG--GGGGR-GFGRGRGRGRGPSEKVSAEDLDADL 236
           A   N NG P R  QGRGG   +QRGG  GGGGR G GRGR  G+GP+EK+SAEDLDADL
Sbjct: 181 AN-GNSNGAPWRGGQGRGG---QQRGGGRGGGGRGGGGRGRRPGKGPAEKISAEDLDADL 236

[Close]

BLAST of Moc02g08860 vs. TAIR 10
Match: AT5G59950.5 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 249.2 bits (635), Expect = 4.5e-66
Identity = 155/244 (63.52%), Postives = 186/244 (76.23%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSG-NSRGGRGRPSGPGPVRR-FPNRAANRT-PYAAPKAPE 60
           M+  LDMSLDD+I  N+KSR G     G G  SGPGP RR  PNR + R+ PY + KAPE
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSAKAPE 60

Query: 61  TAWQHDMFIDQTSGFAVQAGRASA-IQTGTKLYISNLDYGVSNEDIKELFSEVGDMKHYS 120
           + W HDMF D++     ++GR+SA I+TGTKLYISNLDYGV NEDIKELF+EVG++K Y+
Sbjct: 61  STWGHDMFSDRSEDH--RSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYT 120

Query: 121 IHYDKSGRSKGTAEVVFSRRVDAVAAVKKYNNVQLDGKPMKIEIVGTNIATPAAVPTAAV 180
           +H+D+SGRSKGTAEVV+SRR DA+AAVKKYN+VQLDGKPMKIEIVGTN+ T AA P+   
Sbjct: 121 VHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQT-AAAPSGRP 180

Query: 181 APFENLNGFP--RRQQGRGGLPSRQRGG--GGGGR-GFGRGRGRGRGPSEKVSAEDLDAD 236
           A   N NG P  R  QGRGG   +QRGG  GGGGR G GRGR  G+GP+EK+SAEDLDAD
Sbjct: 181 AN-GNSNGAPWSRGGQGRGG---QQRGGGRGGGGRGGGGRGRRPGKGPAEKISAEDLDAD 237

[Close]

BLAST of Moc02g08860 vs. TAIR 10
Match: AT5G59950.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 243.4 bits (620), Expect = 2.5e-64
Identity = 154/243 (63.37%), Postives = 185/243 (76.13%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSG-NSRGGRGRPSGPGPVRR-FPNRAANRT-PYAAPKAPE 60
           M+  LDMSLDD+I  N+KSR G     G G  SGPGP RR  PNR + R+ PY +  APE
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQS--APE 60

Query: 61  TAWQHDMFIDQTSGFAVQAGRASA-IQTGTKLYISNLDYGVSNEDIKELFSEVGDMKHYS 120
           + W HDMF D++     ++GR+SA I+TGTKLYISNLDYGV NEDIKELF+EVG++K Y+
Sbjct: 61  STWGHDMFSDRSEDH--RSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYT 120

Query: 121 IHYDKSGRSKGTAEVVFSRRVDAVAAVKKYNNVQLDGKPMKIEIVGTNIATPAAVPTAAV 180
           +H+D+SGRSKGTAEVV+SRR DA+AAVKKYN+VQLDGKPMKIEIVGTN+ T AA P+   
Sbjct: 121 VHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQT-AAAPSGRP 180

Query: 181 APFENLNGFP-RRQQGRGGLPSRQRGG--GGGGR-GFGRGRGRGRGPSEKVSAEDLDADL 236
           A   N NG P R  QGRGG   +QRGG  GGGGR G GRGR  G+GP+EK+SAEDLDADL
Sbjct: 181 AN-GNSNGAPWRGGQGRGG---QQRGGGRGGGGRGGGGRGRRPGKGPAEKISAEDLDADL 234

[Close]

BLAST of Moc02g08860 vs. TAIR 10
Match: AT5G02530.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 228.8 bits (582), Expect = 6.3e-60
Identity = 157/283 (55.48%), Postives = 179/283 (63.25%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKK---SR------SGNSRGGR-GRPSGPGPVRRFPNRAANRT-P 60
           M+  LDMSLDDIIK+N+K   SR       GN+ GGR G  S  GP RRF NR   RT P
Sbjct: 1   MSGGLDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTAP 60

Query: 61  YAAP----KAPETAWQHDMFIDQTSGFA-------VQAGRASAIQTGTKLYISNLDYGVS 120
           Y+ P    +A +  WQ+D+F    S  A          G  S+I+TGTKLYISNLDYGVS
Sbjct: 61  YSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGVS 120

Query: 121 NEDIKELFSEVGDMKHYSIHYDKSGRSKGTAEVVFSRRVDAVAAVKKYNNVQLDGKPMKI 180
           NEDIKELFSEVGD+K Y IHYD+SGRSKGTAEVVFSRR DA+AAVK+YNNVQLDGK MKI
Sbjct: 121 NEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMKI 180

Query: 181 EIVGTNIATPAAVPTAAVA--PF----------ENLNG-----FPRRQQGRGGLPSRQRG 236
           EIVGTN++ P A+P  A A  PF          EN NG     F    +GRGG   R RG
Sbjct: 181 EIVGTNLSAP-ALPILATAQIPFPTNGILGNFNENFNGNFNGNFNGNFRGRGGFMGRPRG 240

[Close]

BLAST of Moc02g08860 vs. TAIR 10
Match: AT5G02530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 226.9 bits (577), Expect = 2.4e-59
Identity = 157/285 (55.09%), Postives = 179/285 (62.81%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKK---SR------SGNSRGGR-GRPSGPGPVRRFPNRAANRT-P 60
           M+  LDMSLDDIIK+N+K   SR       GN+ GGR G  S  GP RRF NR   RT P
Sbjct: 1   MSGGLDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTAP 60

Query: 61  YAAP----KAPETAWQHDMFIDQTSGFA-------VQAGRASAIQTGTKLYISNLDYGVS 120
           Y+ P    +A +  WQ+D+F    S  A          G  S+I+TGTKLYISNLDYGVS
Sbjct: 61  YSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGVS 120

Query: 121 NEDIKELFSEVGDMKHYSIHYDKSGRSKGTAEVVFSRRVDAVAAVKKYNNVQLDGKPMKI 180
           NEDIKELFSEVGD+K Y IHYD+SGRSKGTAEVVFSRR DA+AAVK+YNNVQLDGK MKI
Sbjct: 121 NEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMKI 180

Query: 181 EIVGTNIATPAAVPTAAVA--PF----------ENLNGFPR-------RQQGRGGLPSRQ 236
           EIVGTN++ P A+P  A A  PF          EN NG          R +GRGG   R 
Sbjct: 181 EIVGTNLSAP-ALPILATAQIPFPTNGILGNFNENFNGNFNGNFNGNFRGRGRGGFMGRP 240

The following BLAST results are available for this feature:

BLAST of Moc02g08860 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148377.1	1.7e-123	99.15	THO complex subunit 4A-like [Momordica charantia]	[more]
XP_038901991.1	1.4e-106	89.36	THO complex subunit 4A-like [Benincasa hispida]	[more]
XP_004143092.1	2.7e-105	88.09	THO complex subunit 4A [Cucumis sativus] >KGN47175.1 hypothetical protein Csa_02...	[more]
XP_008448384.1	1.7e-104	87.66	PREDICTED: THO complex subunit 4A-like isoform X1 [Cucumis melo] >XP_008448386.1...	[more]
KAG6605476.1	6.6e-104	87.71	THO complex subunit 4A, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Moc02g08860 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L773	4.8e-65	63.79	THO complex subunit 4A OS=Arabidopsis thaliana OX=3702 GN=ALY1 PE=1 SV=1	[more]
Q8L719	3.4e-58	55.09	THO complex subunit 4B OS=Arabidopsis thaliana OX=3702 GN=ALY2 PE=1 SV=1	[more]
Q6NQ72	1.2e-39	42.51	THO complex subunit 4D OS=Arabidopsis thaliana OX=3702 GN=ALY4 PE=1 SV=1	[more]
B5FXN8	1.7e-38	45.63	THO complex subunit 4 OS=Taeniopygia guttata OX=59729 GN=ALYREF PE=2 SV=1	[more]
Q3T0I4	8.6e-38	43.07	THO complex subunit 4 OS=Bos taurus OX=9913 GN=ALYREF PE=2 SV=1	[more]

BLAST of Moc02g08860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D4W8	8.1e-124	99.15	THO complex subunit 4A-like OS=Momordica charantia OX=3673 GN=LOC111017043 PE=4 ...	[more]
A0A0A0KBU2	1.3e-105	88.09	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G193610 PE=4 SV...	[more]
A0A1S3BK70	8.5e-105	87.66	THO complex subunit 4A-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490589 P...	[more]
A0A6J1L1M6	4.2e-104	87.66	THO complex subunit 4A-like OS=Cucurbita maxima OX=3661 GN=LOC111499593 PE=4 SV=...	[more]
A0A6J1G721	5.5e-104	87.66	THO complex subunit 4A-like OS=Cucurbita moschata OX=3662 GN=LOC111451345 PE=4 S...	[more]

BLAST of Moc02g08860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59950.1	3.4e-66	63.79	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G59950.5	4.5e-66	63.52	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G59950.3	2.5e-64	63.37	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G02530.2	6.3e-60	55.48	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G02530.1	2.4e-59	55.09	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 87..159 e-value: 3.7E-19 score: 79.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 88..156 e-value: 7.2E-16 score: 57.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 86..163 score: 16.022581
IPR025715	Chromatin target of PRMT1 protein, C-terminal	SMART	SM01218	FoP_duplication_2	coord: 175..238 e-value: 2.8E-4 score: 30.2
IPR025715	Chromatin target of PRMT1 protein, C-terminal	PFAM	PF13865	FoP_duplication	coord: 186..234 e-value: 1.3E-5 score: 25.8
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 73..225 e-value: 2.5E-26 score: 94.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 184..224
None	No IPR available	PANTHER	PTHR19965	RNA AND EXPORT FACTOR BINDING PROTEIN	coord: 1..234
None	No IPR available	PANTHER	PTHR19965:SF74	CHROMATIN TARGET OF PRMT1 PROTEIN-RELATED	coord: 1..234
None	No IPR available	CDD	cd12680	RRM_THOC4	coord: 86..160 e-value: 4.77208E-47 score: 151.253
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 23..160

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc02g08860.1	Moc02g08860.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006406	mRNA export from nucleus
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding