Moc02g08050 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc02g08050
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	30S ribosomal protein S18
Location	chr2: 5752469 .. 5754640 (+)
RNA-Seq Expression	Moc02g08050
Synteny	Moc02g08050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAACCGTTCAGGCTGCTTTGCGATCCCTTGGCGGTGGATTATCTCAAAGATTCAAGCAATCTTCCATGCTCAGAAGCCTTTCCACAAACGCCGCTCGTGGTAACTTCCACTTGTTTTGAATTTGAATCCATGAATTTCTTGTTATACTTTGAGTATTGACGTACTTTTAGTTCTTGATTTGGGCCGACATTCATCAGGTTTTTATGTTGCTTAAATGTGTTTTCATTTAGACATTGGCTTCACGGATTATCGAGTGCGAAACATCATTGTTTTTACGTCTTTCGTGGCTAAAACTTTTAAACAGAGACTGGCTTCGATGATGAAAAGAGAAAACCCGATTCCTTTGAGTCTGCTGATGATTTTGAACGTCGGATATTTGGTGGTGTTTCCTTGGACGATTCCGGAAACGAGGCTTTCTTTGAGAAGCTTGATAGGCTTGGGAAGCCTCGTGAAAGAGTAGGTTCAAGACTGAGTGGAGGAAACAATTTTCAGGCGTTGTATGGTCTTGATGATTATCTTAACACATTGTCAGATGGGATGGATGGCAAATTGAAGAAAGCTGCCACTTATTTTGAGTTTGATCCCGAGGAAATATCAAAAGATGATTATACTTTCAGAGCAGATATGTCTTTTAAGCCTGGATCGACATACGAAATCAAGGTAATGTAGCAGCGCAACTGGTTGTTTTATACTTGTTAACAATGAATCCAATTATTATTCGTGTCATAACATCAATTTGTAATTACATTGCGTGGTAAAGAATTATTCTTACCAGAACTAATCCATGTCCCCTTCAAGAAGCATGCTAGGTGAATTTTGTGGCCAACTAGGTCTGGATGGTTAGGTTAGCATTTGGATGATATGTGACGGAAATGAACTTTTCTACATTATTATCTTAGCTTTCTGAGTCCTTGGTAGAACTTTTACCTCTCTCTTTGTAGGTGATGTTGTGTACTTAATGTTACCAATATTCTAAGTACTTTCAGATCTATACAGGATCTGGATCTAAGAAAGCCAGGTGTACGCAAACCTCCCAAAAGGGTCGAGTTTCAGGTGACTACGGAGGAGGTCTTAAAAAAAGCTGATTTCAGGGTGAGCATTCCTTAATTTCATGTTGCTGATTTACCAATTCCATTTACCAGTTCTTTTTGGATAGCTGGGAATAAAAAAATGTTGGAATTAGTAGTAAAAGTCCTTTGGATACATTGCAAATTTTTTTCTCTTAGTCACCTACTTTATATTGGATATCGTACGATATGAATTTCTCATCTAAATGTCATAGGCTTAAACAGAAGTACTTGGTTTTGAATTCATTAATATAAGTAATCTAGAAACAGAGTACGATAAATGATAAGTTGGGGTAGGATTGTTTATTGCTGGTTTTCTGCTTAGTTCTATTTAAAAAGTCTGGCAGAGTGTTCATGTGTGTTTTTATCAAAACTGTATATCCTAGAACAAGAGAAATTATTTCGGTTAGAATTTTGGTTTGTCATCATAATGTAGTTTGTAGTTTCCAATAGCCATGGACCATCAAAATTGTTTGAATAATTCGATTAATTGATTTACGAACGAGTTTCTGATATGGGTTGTGTATGTAATCGGTTGTGTTTGCAATCAAGAAAGACAGATCGTACAATGCCCTCTAAGAGTTTCTAAAGTTGTTCTTTGTGGCACTGAAATTTAGTTCACGGCTCTCTTAGATGAAGTTTTATAATACAGAATACCTTTCCAAGCAAAAGATACTTGATGAGAGTTAAATAGCATTTTATGTCTCTTACCACTGCTGTAGGCATATCTAACAATGAGCTAATAGTTGTCTGCAGAATGTTAGATTCCTGGCAAACTTTATAACTGACGCTGGAATCATTAACAAGAGAAGCAAGGTGAACTTTTTGAACAAAAATCAGATTTTGAGAAAGTTTGAGTCTTCAACCGTCATCTTATTTTATCACTTCAACAATTTGCAGACAGGTATTAGTGCCAAGGCACAGAGGAAAGTTGCCCGAGAGATCAAAACTGCACGAGCTTTTGGCTTAATGCCTTTCACAACAATGGGAACCAAAACATTTGTTTTTGGGAAAACTATGGAGGATCTTGATAAGGACTATGAGTATGAAGTTTTTGATAATACTGCTGATGCAGATAGAGGGCACCCGCTTGGATCCTAA

mRNA sequence

ATGAGAACCGTTCAGGCTGCTTTGCGATCCCTTGGCGGTGGATTATCTCAAAGATTCAAGCAATCTTCCATGCTCAGAAGCCTTTCCACAAACGCCGCTCGTGAGACTGGCTTCGATGATGAAAAGAGAAAACCCGATTCCTTTGAGTCTGCTGATGATTTTGAACGTCGGATATTTGGTGGTGTTTCCTTGGACGATTCCGGAAACGAGGCTTTCTTTGAGAAGCTTGATAGGCTTGGGAAGCCTCGTGAAAGAGTAGGTTCAAGACTGAGTGGAGGAAACAATTTTCAGGCGTTGTATGGTCTTGATGATTATCTTAACACATTGTCAGATGGGATGGATGGCAAATTGAAGAAAGCTGCCACTTATTTTGAGTTTGATCCCGAGGAAATATCAAAAGATGATTATACTTTCAGAGCAGATATGTCTTTTAAGCCTGGATCGACATACGAAATCAAGGATCTGGATCTAAGAAAGCCAGGTGTACGCAAACCTCCCAAAAGGGTCGAGTTTCAGGTGACTACGGAGGAGGTCTTAAAAAAAGCTGATTTCAGGAATGTTAGATTCCTGGCAAACTTTATAACTGACGCTGGAATCATTAACAAGAGAAGCAAGACAGGTATTAGTGCCAAGGCACAGAGGAAAGTTGCCCGAGAGATCAAAACTGCACGAGCTTTTGGCTTAATGCCTTTCACAACAATGGGAACCAAAACATTTGTTTTTGGGAAAACTATGGAGGATCTTGATAAGGACTATGAGTATGAAGTTTTTGATAATACTGCTGATGCAGATAGAGGGCACCCGCTTGGATCCTAA

Coding sequence (CDS)

ATGAGAACCGTTCAGGCTGCTTTGCGATCCCTTGGCGGTGGATTATCTCAAAGATTCAAGCAATCTTCCATGCTCAGAAGCCTTTCCACAAACGCCGCTCGTGAGACTGGCTTCGATGATGAAAAGAGAAAACCCGATTCCTTTGAGTCTGCTGATGATTTTGAACGTCGGATATTTGGTGGTGTTTCCTTGGACGATTCCGGAAACGAGGCTTTCTTTGAGAAGCTTGATAGGCTTGGGAAGCCTCGTGAAAGAGTAGGTTCAAGACTGAGTGGAGGAAACAATTTTCAGGCGTTGTATGGTCTTGATGATTATCTTAACACATTGTCAGATGGGATGGATGGCAAATTGAAGAAAGCTGCCACTTATTTTGAGTTTGATCCCGAGGAAATATCAAAAGATGATTATACTTTCAGAGCAGATATGTCTTTTAAGCCTGGATCGACATACGAAATCAAGGATCTGGATCTAAGAAAGCCAGGTGTACGCAAACCTCCCAAAAGGGTCGAGTTTCAGGTGACTACGGAGGAGGTCTTAAAAAAAGCTGATTTCAGGAATGTTAGATTCCTGGCAAACTTTATAACTGACGCTGGAATCATTAACAAGAGAAGCAAGACAGGTATTAGTGCCAAGGCACAGAGGAAAGTTGCCCGAGAGATCAAAACTGCACGAGCTTTTGGCTTAATGCCTTTCACAACAATGGGAACCAAAACATTTGTTTTTGGGAAAACTATGGAGGATCTTGATAAGGACTATGAGTATGAAGTTTTTGATAATACTGCTGATGCAGATAGAGGGCACCCGCTTGGATCCTAA

Protein sequence

MRTVQAALRSLGGGLSQRFKQSSMLRSLSTNAARETGFDDEKRKPDSFESADDFERRIFGGVSLDDSGNEAFFEKLDRLGKPRERVGSRLSGGNNFQALYGLDDYLNTLSDGMDGKLKKAATYFEFDPEEISKDDYTFRADMSFKPGSTYEIKDLDLRKPGVRKPPKRVEFQVTTEEVLKKADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKTFVFGKTMEDLDKDYEYEVFDNTADADRGHPLGS

Homology

[Close]

BLAST of Moc02g08050 vs. NCBI nr
Match: XP_022148322.1 (uncharacterized protein LOC111017003 [Momordica charantia])

HSP 1 Score: 533.1 bits (1372), Expect = 1.4e-147
Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 0


Query: 1   MRTVQAALRSLGGGLSQRFKQSSMLRSLSTNAARETGFDDEKRKPDSFESADDFERRIFG 60
           MRTVQAALRSLGGGLSQRFKQSSMLRSLSTNAARETGFDDEKRKPDSFESADDFERRIFG
Sbjct: 1   MRTVQAALRSLGGGLSQRFKQSSMLRSLSTNAARETGFDDEKRKPDSFESADDFERRIFG 60

Query: 61  GVSLDDSGNEAFFEKLDRLGKPRERVGSRLSGGNNFQALYGLDDYLNTLSDGMDGKLKKA 120
           GVSLDDSGNEAFFEKLDRLGKPRERVGSRLSGGNNFQALYGLDDYLNTLSDGMDGKLKKA
Sbjct: 61  GVSLDDSGNEAFFEKLDRLGKPRERVGSRLSGGNNFQALYGLDDYLNTLSDGMDGKLKKA 120

Query: 121 ATYFEFDPEEISKDDYTFRADMSFKPGSTYEIKDLDLRKPGVRKPPKRVEFQVTTEEVLK 180
           ATYFEFDPEEISKDDYTFRADMSFKPGSTYEIKDLDLRKPGVRKPPKRVEFQVTTEEVLK
Sbjct: 121 ATYFEFDPEEISKDDYTFRADMSFKPGSTYEIKDLDLRKPGVRKPPKRVEFQVTTEEVLK 180

Query: 181 KADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKTFV 240
           KADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKTFV
Sbjct: 181 KADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKTFV 240

Query: 241 FGKTMEDLDKDYEYEVFDNTADADRGHPLGS 272
           FGKTMEDLDKDYEYEVFDNTADADRGHPLGS
Sbjct: 241 FGKTMEDLDKDYEYEVFDNTADADRGHPLGS 271

[Close]

BLAST of Moc02g08050 vs. NCBI nr
Match: XP_022986919.1 (uncharacterized protein LOC111484513 [Cucurbita maxima])

HSP 1 Score: 468.4 bits (1204), Expect = 4.2e-128
Identity = 242/271 (89.30%), Postives = 254/271 (93.73%), Query Frame = 0


Query: 1   MRTVQAALRSLGGGLSQRFKQSSMLRSLSTNAARETGFDDEKRKPDSFESADDFERRIFG 60
           M TVQ ALR+LGGGLS+RFKQ S+LR+LSTNAAR++GFDD K KPDSFESADDFERRIFG
Sbjct: 1   MSTVQVALRTLGGGLSRRFKQPSVLRNLSTNAARDSGFDD-KGKPDSFESADDFERRIFG 60

Query: 61  GVSLDDSGNEAFFEKLDRLGKPRERVGSRLSGGNNFQALYGLDDYLNTLSDGMDGKLKKA 120
           GVS  DSGN+AFFEKLDRLGKPRER+GSRLSGGNNFQALYGLDD LNTLSDGMDGKLKKA
Sbjct: 61  GVSAGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYGLDDNLNTLSDGMDGKLKKA 120

Query: 121 ATYFEFDPEEISKDDYTFRADMSFKPGSTYEIKDLDLRKPGVRKPPKRVEFQVTTEEVLK 180
           +TYFEFD EEI+KDDYTFRADMSFKPGSTYEIKDLDL KPGVRKPPKRVEFQVTTEEVL+
Sbjct: 121 STYFEFDTEEIAKDDYTFRADMSFKPGSTYEIKDLDLTKPGVRKPPKRVEFQVTTEEVLR 180

Query: 181 KADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKTFV 240
           KADFRNVRFLANFITDAGII KRSKT ISAKAQRKVAREIKTARAFGLMPFTTMGTK+FV
Sbjct: 181 KADFRNVRFLANFITDAGIIIKRSKTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFV 240

Query: 241 FGKTMEDLDKDYEYEVFDNTADADRGHPLGS 272
           FGKTMEDLDKDYEYEVFDN    D GHPLGS
Sbjct: 241 FGKTMEDLDKDYEYEVFDNN---DGGHPLGS 267

[Close]

BLAST of Moc02g08050 vs. NCBI nr
Match: XP_022943865.1 (uncharacterized protein LOC111448465 [Cucurbita moschata])

HSP 1 Score: 465.3 bits (1196), Expect = 3.6e-127
Identity = 239/271 (88.19%), Postives = 254/271 (93.73%), Query Frame = 0


Query: 1   MRTVQAALRSLGGGLSQRFKQSSMLRSLSTNAARETGFDDEKRKPDSFESADDFERRIFG 60
           MRTVQ ALR+LGGGLS+RFKQ S+LR+LSTNAAR++GFDD K KPDSFESADDFERRIFG
Sbjct: 1   MRTVQVALRTLGGGLSRRFKQPSVLRNLSTNAARDSGFDD-KGKPDSFESADDFERRIFG 60

Query: 61  GVSLDDSGNEAFFEKLDRLGKPRERVGSRLSGGNNFQALYGLDDYLNTLSDGMDGKLKKA 120
           GVS  DSGN+AFFEKLDR+GKPRER+GSRLSGGNNFQ+LYGLDD LNTLSDGMDGKLKKA
Sbjct: 61  GVSTGDSGNDAFFEKLDRIGKPRERIGSRLSGGNNFQSLYGLDDNLNTLSDGMDGKLKKA 120

Query: 121 ATYFEFDPEEISKDDYTFRADMSFKPGSTYEIKDLDLRKPGVRKPPKRVEFQVTTEEVLK 180
           +TYFEFD EEI+KDDYTFRADMSFKPGSTYE+KDLDL KPGVRKPPKRVEFQVTTEEVL+
Sbjct: 121 STYFEFDTEEIAKDDYTFRADMSFKPGSTYEVKDLDLTKPGVRKPPKRVEFQVTTEEVLR 180

Query: 181 KADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKTFV 240
           KADFRNVRFLANFITDAGII KRSKT ISAKAQRKVAREIKTARAFGLMPFTTMGTK+FV
Sbjct: 181 KADFRNVRFLANFITDAGIIIKRSKTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFV 240

Query: 241 FGKTMEDLDKDYEYEVFDNTADADRGHPLGS 272
           FGKTMEDLDKDYEYEVFDN    D  HPLGS
Sbjct: 241 FGKTMEDLDKDYEYEVFDNN---DGEHPLGS 267

[Close]

BLAST of Moc02g08050 vs. NCBI nr
Match: XP_022947026.1 (uncharacterized protein LOC111451027 isoform X1 [Cucurbita moschata])

HSP 1 Score: 464.5 bits (1194), Expect = 6.1e-127
Identity = 235/271 (86.72%), Postives = 253/271 (93.36%), Query Frame = 0


Query: 1   MRTVQAALRSLGGGLSQRFKQSSMLRSLSTNAARETGFDDEKRKPDSFESADDFERRIFG 60
           MR VQ A R++GGG++++FKQ S LR+LSTNAAR+  FDDE  K +SFESADDFERRIFG
Sbjct: 1   MRNVQVAFRTIGGGITRKFKQPSALRNLSTNAARDCSFDDE-GKSNSFESADDFERRIFG 60

Query: 61  GVSLDDSGNEAFFEKLDRLGKPRERVGSRLSGGNNFQALYGLDDYLNTLSDGMDGKLKKA 120
           GVSL DSGN+AFFEKLDRLGKPRER+GSRLSGGNNFQALYG++D LNTLSDGMDGKLKKA
Sbjct: 61  GVSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYGIEDNLNTLSDGMDGKLKKA 120

Query: 121 ATYFEFDPEEISKDDYTFRADMSFKPGSTYEIKDLDLRKPGVRKPPKRVEFQVTTEEVLK 180
           +TYFEFDPEEI+KDDYTFRADMSFKPGSTYEIKDLDL KPGVRKPPKRVEFQVTTEEVL+
Sbjct: 121 STYFEFDPEEIAKDDYTFRADMSFKPGSTYEIKDLDLTKPGVRKPPKRVEFQVTTEEVLR 180

Query: 181 KADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKTFV 240
           KADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTK+FV
Sbjct: 181 KADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFV 240

Query: 241 FGKTMEDLDKDYEYEVFDNTADADRGHPLGS 272
           FGKTME LDKDYEYEVF+N  DADRG P GS
Sbjct: 241 FGKTMEYLDKDYEYEVFENNTDADRGRPHGS 270

[Close]

BLAST of Moc02g08050 vs. NCBI nr
Match: XP_023512473.1 (uncharacterized protein LOC111777218 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 463.8 bits (1192), Expect = 1.0e-126
Identity = 239/271 (88.19%), Postives = 254/271 (93.73%), Query Frame = 0


Query: 1   MRTVQAALRSLGGGLSQRFKQSSMLRSLSTNAARETGFDDEKRKPDSFESADDFERRIFG 60
           MRTVQ ALR+LG GLS+RFKQ S+LR+LSTNAAR++GFDD K KPDSFESADDFERRIFG
Sbjct: 1   MRTVQVALRTLGRGLSRRFKQPSVLRNLSTNAARDSGFDD-KGKPDSFESADDFERRIFG 60

Query: 61  GVSLDDSGNEAFFEKLDRLGKPRERVGSRLSGGNNFQALYGLDDYLNTLSDGMDGKLKKA 120
           GVS  DSGN+AFFEKLDRLGKPRER+GSRLSGGNNFQ+LYGLDD LNTLSDGMDGKLKKA
Sbjct: 61  GVSTGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQSLYGLDDNLNTLSDGMDGKLKKA 120

Query: 121 ATYFEFDPEEISKDDYTFRADMSFKPGSTYEIKDLDLRKPGVRKPPKRVEFQVTTEEVLK 180
           +TYFEFD EEI+KDDYTFRADMSFKPGSTYE+KDLDL KPGVRKPPKRVEFQVTTEEVL+
Sbjct: 121 STYFEFDTEEIAKDDYTFRADMSFKPGSTYEVKDLDLTKPGVRKPPKRVEFQVTTEEVLR 180

Query: 181 KADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKTFV 240
           KADFRNVRFLANFITDAGII KRSKT ISAKAQRKVAREIKTARAFGLMPFTTMGTK+FV
Sbjct: 181 KADFRNVRFLANFITDAGIIIKRSKTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFV 240

Query: 241 FGKTMEDLDKDYEYEVFDNTADADRGHPLGS 272
           FGKTMEDLDKDYEYEVFDN    D G+PLGS
Sbjct: 241 FGKTMEDLDKDYEYEVFDNN---DGGYPLGS 267

[Close]

BLAST of Moc02g08050 vs. ExPASy Swiss-Prot
Match: P62659 (30S ribosomal protein S18 OS=Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27) OX=262724 GN=rpsR PE=1 SV=2)

HSP 1 Score: 57.8 bits (138), Expect = 2.3e-07
Identity = 32/80 (40.00%), Postives = 48/80 (60.00%), Query Frame = 0


Query: 153 KDLDLRKPGVRKPPKRVEFQVTTEEVLKKADFRNVRFLANFITDAGIINKRSKTGISAKA 212
           K+   +K   R+P ++ + + T  E     D+RNV  L  F+++ G I  R +TG+SAK 
Sbjct: 4   KNAKPKKEAQRRPSRKAKVKATLGE-FDLRDYRNVEVLKRFLSETGKILPRRRTGLSAKE 63

Query: 213 QRKVAREIKTARAFGLMPFT 233
           QR +A+ IK AR  GL+PFT
Sbjct: 64  QRILAKTIKRARILGLLPFT 82

[Close]

BLAST of Moc02g08050 vs. ExPASy Swiss-Prot
Match: Q5SLQ0 (30S ribosomal protein S18 OS=Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8) OX=300852 GN=rpsR PE=1 SV=3)

HSP 1 Score: 57.8 bits (138), Expect = 2.3e-07
Identity = 32/80 (40.00%), Postives = 48/80 (60.00%), Query Frame = 0


Query: 153 KDLDLRKPGVRKPPKRVEFQVTTEEVLKKADFRNVRFLANFITDAGIINKRSKTGISAKA 212
           K+   +K   R+P ++ + + T  E     D+RNV  L  F+++ G I  R +TG+SAK 
Sbjct: 4   KNAKPKKEAQRRPSRKAKVKATLGE-FDLRDYRNVEVLKRFLSETGKILPRRRTGLSAKE 63

Query: 213 QRKVAREIKTARAFGLMPFT 233
           QR +A+ IK AR  GL+PFT
Sbjct: 64  QRILAKTIKRARILGLLPFT 82

[Close]

BLAST of Moc02g08050 vs. ExPASy Swiss-Prot
Match: P80382 (30S ribosomal protein S18 OS=Thermus thermophilus OX=274 GN=rpsR PE=1 SV=3)

HSP 1 Score: 56.2 bits (134), Expect = 6.6e-07
Identity = 31/80 (38.75%), Postives = 47/80 (58.75%), Query Frame = 0


Query: 153 KDLDLRKPGVRKPPKRVEFQVTTEEVLKKADFRNVRFLANFITDAGIINKRSKTGISAKA 212
           K+   +K   R+P ++ + + T  E     D+RNV  L  F+++ G I  R +TG+S K 
Sbjct: 4   KNAKPKKEAQRRPSRKAKVKATLGE-FDLRDYRNVEVLKRFLSETGKILPRRRTGLSGKE 63

Query: 213 QRKVAREIKTARAFGLMPFT 233
           QR +A+ IK AR  GL+PFT
Sbjct: 64  QRILAKTIKRARILGLLPFT 82

[Close]

BLAST of Moc02g08050 vs. ExPASy Swiss-Prot
Match: Q8RIE4 (30S ribosomal protein S18 OS=Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / DSM 15643 / BCRC 10681 / CIP 101130 / JCM 8532 / KCTC 2640 / LMG 13131 / VPI 4355) OX=190304 GN=rpsR PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.5e-06
Identity = 27/66 (40.91%), Postives = 41/66 (62.12%), Query Frame = 0


Query: 167 KRVEFQVTTEEVLKKADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAF 226
           +R + +V  EE+    D++NV  L  F++D G IN    TG +AK QRK+A+ +K AR  
Sbjct: 7   RRAKLRVKAEEI----DYKNVELLKRFVSDKGKINPSRLTGANAKLQRKIAKAVKRARNI 66

Query: 227 GLMPFT 233
            L+P+T
Sbjct: 67  ALIPYT 68

[Close]

BLAST of Moc02g08050 vs. ExPASy Swiss-Prot
Match: C1CXK0 (30S ribosomal protein S18 OS=Deinococcus deserti (strain DSM 17065 / CIP 109153 / LMG 22923 / VCD115) OX=546414 GN=rpsR PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.3e-06
Identity = 29/77 (37.66%), Postives = 48/77 (62.34%), Query Frame = 0


Query: 158 RKPGVRKP--PKRVEFQVTTEEVLKKADFRNVRFLANFITDAGIINKRSKTGISAKAQRK 217
           RKP  + P  P++ +    +   L+  D+++V+ L  F++D G I  R +TG+SAK QR+
Sbjct: 10  RKPRGKGPKRPRKPKVDPFSIGELEITDYKDVKMLRRFVSDTGKILPRRRTGLSAKHQRR 69

Query: 218 VAREIKTARAFGLMPFT 233
           +A+ IK AR   L+P+T
Sbjct: 70  IAQTIKVARQLALLPYT 86

[Close]

BLAST of Moc02g08050 vs. ExPASy TrEMBL
Match: A0A6J1D4R9 (uncharacterized protein LOC111017003 OS=Momordica charantia OX=3673 GN=LOC111017003 PE=3 SV=1)

HSP 1 Score: 533.1 bits (1372), Expect = 6.8e-148
Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 0


Query: 1   MRTVQAALRSLGGGLSQRFKQSSMLRSLSTNAARETGFDDEKRKPDSFESADDFERRIFG 60
           MRTVQAALRSLGGGLSQRFKQSSMLRSLSTNAARETGFDDEKRKPDSFESADDFERRIFG
Sbjct: 1   MRTVQAALRSLGGGLSQRFKQSSMLRSLSTNAARETGFDDEKRKPDSFESADDFERRIFG 60

Query: 61  GVSLDDSGNEAFFEKLDRLGKPRERVGSRLSGGNNFQALYGLDDYLNTLSDGMDGKLKKA 120
           GVSLDDSGNEAFFEKLDRLGKPRERVGSRLSGGNNFQALYGLDDYLNTLSDGMDGKLKKA
Sbjct: 61  GVSLDDSGNEAFFEKLDRLGKPRERVGSRLSGGNNFQALYGLDDYLNTLSDGMDGKLKKA 120

Query: 121 ATYFEFDPEEISKDDYTFRADMSFKPGSTYEIKDLDLRKPGVRKPPKRVEFQVTTEEVLK 180
           ATYFEFDPEEISKDDYTFRADMSFKPGSTYEIKDLDLRKPGVRKPPKRVEFQVTTEEVLK
Sbjct: 121 ATYFEFDPEEISKDDYTFRADMSFKPGSTYEIKDLDLRKPGVRKPPKRVEFQVTTEEVLK 180

Query: 181 KADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKTFV 240
           KADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKTFV
Sbjct: 181 KADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKTFV 240

Query: 241 FGKTMEDLDKDYEYEVFDNTADADRGHPLGS 272
           FGKTMEDLDKDYEYEVFDNTADADRGHPLGS
Sbjct: 241 FGKTMEDLDKDYEYEVFDNTADADRGHPLGS 271

[Close]

BLAST of Moc02g08050 vs. ExPASy TrEMBL
Match: A0A6J1JHF0 (uncharacterized protein LOC111484513 OS=Cucurbita maxima OX=3661 GN=LOC111484513 PE=4 SV=1)

HSP 1 Score: 468.4 bits (1204), Expect = 2.0e-128
Identity = 242/271 (89.30%), Postives = 254/271 (93.73%), Query Frame = 0


Query: 1   MRTVQAALRSLGGGLSQRFKQSSMLRSLSTNAARETGFDDEKRKPDSFESADDFERRIFG 60
           M TVQ ALR+LGGGLS+RFKQ S+LR+LSTNAAR++GFDD K KPDSFESADDFERRIFG
Sbjct: 1   MSTVQVALRTLGGGLSRRFKQPSVLRNLSTNAARDSGFDD-KGKPDSFESADDFERRIFG 60

Query: 61  GVSLDDSGNEAFFEKLDRLGKPRERVGSRLSGGNNFQALYGLDDYLNTLSDGMDGKLKKA 120
           GVS  DSGN+AFFEKLDRLGKPRER+GSRLSGGNNFQALYGLDD LNTLSDGMDGKLKKA
Sbjct: 61  GVSAGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYGLDDNLNTLSDGMDGKLKKA 120

Query: 121 ATYFEFDPEEISKDDYTFRADMSFKPGSTYEIKDLDLRKPGVRKPPKRVEFQVTTEEVLK 180
           +TYFEFD EEI+KDDYTFRADMSFKPGSTYEIKDLDL KPGVRKPPKRVEFQVTTEEVL+
Sbjct: 121 STYFEFDTEEIAKDDYTFRADMSFKPGSTYEIKDLDLTKPGVRKPPKRVEFQVTTEEVLR 180

Query: 181 KADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKTFV 240
           KADFRNVRFLANFITDAGII KRSKT ISAKAQRKVAREIKTARAFGLMPFTTMGTK+FV
Sbjct: 181 KADFRNVRFLANFITDAGIIIKRSKTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFV 240

Query: 241 FGKTMEDLDKDYEYEVFDNTADADRGHPLGS 272
           FGKTMEDLDKDYEYEVFDN    D GHPLGS
Sbjct: 241 FGKTMEDLDKDYEYEVFDNN---DGGHPLGS 267

[Close]

BLAST of Moc02g08050 vs. ExPASy TrEMBL
Match: A0A6J1FYC1 (uncharacterized protein LOC111448465 OS=Cucurbita moschata OX=3662 GN=LOC111448465 PE=4 SV=1)

HSP 1 Score: 465.3 bits (1196), Expect = 1.7e-127
Identity = 239/271 (88.19%), Postives = 254/271 (93.73%), Query Frame = 0


Query: 1   MRTVQAALRSLGGGLSQRFKQSSMLRSLSTNAARETGFDDEKRKPDSFESADDFERRIFG 60
           MRTVQ ALR+LGGGLS+RFKQ S+LR+LSTNAAR++GFDD K KPDSFESADDFERRIFG
Sbjct: 1   MRTVQVALRTLGGGLSRRFKQPSVLRNLSTNAARDSGFDD-KGKPDSFESADDFERRIFG 60

Query: 61  GVSLDDSGNEAFFEKLDRLGKPRERVGSRLSGGNNFQALYGLDDYLNTLSDGMDGKLKKA 120
           GVS  DSGN+AFFEKLDR+GKPRER+GSRLSGGNNFQ+LYGLDD LNTLSDGMDGKLKKA
Sbjct: 61  GVSTGDSGNDAFFEKLDRIGKPRERIGSRLSGGNNFQSLYGLDDNLNTLSDGMDGKLKKA 120

Query: 121 ATYFEFDPEEISKDDYTFRADMSFKPGSTYEIKDLDLRKPGVRKPPKRVEFQVTTEEVLK 180
           +TYFEFD EEI+KDDYTFRADMSFKPGSTYE+KDLDL KPGVRKPPKRVEFQVTTEEVL+
Sbjct: 121 STYFEFDTEEIAKDDYTFRADMSFKPGSTYEVKDLDLTKPGVRKPPKRVEFQVTTEEVLR 180

Query: 181 KADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKTFV 240
           KADFRNVRFLANFITDAGII KRSKT ISAKAQRKVAREIKTARAFGLMPFTTMGTK+FV
Sbjct: 181 KADFRNVRFLANFITDAGIIIKRSKTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFV 240

Query: 241 FGKTMEDLDKDYEYEVFDNTADADRGHPLGS 272
           FGKTMEDLDKDYEYEVFDN    D  HPLGS
Sbjct: 241 FGKTMEDLDKDYEYEVFDNN---DGEHPLGS 267

[Close]

BLAST of Moc02g08050 vs. ExPASy TrEMBL
Match: A0A6J1G586 (uncharacterized protein LOC111451027 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111451027 PE=3 SV=1)

HSP 1 Score: 464.5 bits (1194), Expect = 3.0e-127
Identity = 235/271 (86.72%), Postives = 253/271 (93.36%), Query Frame = 0


Query: 1   MRTVQAALRSLGGGLSQRFKQSSMLRSLSTNAARETGFDDEKRKPDSFESADDFERRIFG 60
           MR VQ A R++GGG++++FKQ S LR+LSTNAAR+  FDDE  K +SFESADDFERRIFG
Sbjct: 1   MRNVQVAFRTIGGGITRKFKQPSALRNLSTNAARDCSFDDE-GKSNSFESADDFERRIFG 60

Query: 61  GVSLDDSGNEAFFEKLDRLGKPRERVGSRLSGGNNFQALYGLDDYLNTLSDGMDGKLKKA 120
           GVSL DSGN+AFFEKLDRLGKPRER+GSRLSGGNNFQALYG++D LNTLSDGMDGKLKKA
Sbjct: 61  GVSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYGIEDNLNTLSDGMDGKLKKA 120

Query: 121 ATYFEFDPEEISKDDYTFRADMSFKPGSTYEIKDLDLRKPGVRKPPKRVEFQVTTEEVLK 180
           +TYFEFDPEEI+KDDYTFRADMSFKPGSTYEIKDLDL KPGVRKPPKRVEFQVTTEEVL+
Sbjct: 121 STYFEFDPEEIAKDDYTFRADMSFKPGSTYEIKDLDLTKPGVRKPPKRVEFQVTTEEVLR 180

Query: 181 KADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKTFV 240
           KADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTK+FV
Sbjct: 181 KADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFV 240

Query: 241 FGKTMEDLDKDYEYEVFDNTADADRGHPLGS 272
           FGKTME LDKDYEYEVF+N  DADRG P GS
Sbjct: 241 FGKTMEYLDKDYEYEVFENNTDADRGRPHGS 270

[Close]

BLAST of Moc02g08050 vs. ExPASy TrEMBL
Match: A0A6J1KYL3 (LOW QUALITY PROTEIN: uncharacterized protein LOC111499912 OS=Cucurbita maxima OX=3661 GN=LOC111499912 PE=3 SV=1)

HSP 1 Score: 443.0 bits (1138), Expect = 9.2e-121
Identity = 225/263 (85.55%), Postives = 243/263 (92.40%), Query Frame = 0


Query: 9   RSLGGGLSQRFKQSSMLRSLSTNAARETGFDDEKRKPDSFESADDFERRIFGGVSLDDSG 68
           R++GGG++++FKQ S LR+LSTNAAR+  FDDE  K +SFESADDFERRIFGGVSL DSG
Sbjct: 6   RTIGGGITRKFKQPSALRNLSTNAARDCSFDDE-GKSNSFESADDFERRIFGGVSLGDSG 65

Query: 69  NEAFFEKLDRLGKPRERVGSRLSGGNNFQALYGLDDYLNTLSDGMDGKLKKAATYFEFDP 128
           N+AFFEKLDRLGKPRER+GSRLSGGNNFQALYG++D LNTLSDGMDGKLKKA+TYFEFDP
Sbjct: 66  NDAFFEKLDRLGKPRERIGSRLSGGNNFQALYGIEDNLNTLSDGMDGKLKKASTYFEFDP 125

Query: 129 EEISKDDYTFRADMSFKPGSTYEIKDLDLRKPGVRKPPKRVEFQVTTEEVLKKADFRNVR 188
           EEI+KDDYTFRADMSFKPGSTYEIKDLDL KPGVRK PKRVEF V TEEVL+ ADFRNVR
Sbjct: 126 EEIAKDDYTFRADMSFKPGSTYEIKDLDLTKPGVRKLPKRVEFXVMTEEVLRXADFRNVR 185

Query: 189 FLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKTFVFGKTMEDL 248
           FLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMP TTMGTK+FVFGKTME L
Sbjct: 186 FLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPLTTMGTKSFVFGKTMEYL 245

Query: 249 DKDYEYEVFDNTADADRGHPLGS 272
           DKDYEYEVF+N  DADRG P GS
Sbjct: 246 DKDYEYEVFENNTDADRGRPHGS 267

[Close]

BLAST of Moc02g08050 vs. TAIR 10
Match: AT1G07210.1 (Ribosomal protein S18 )

HSP 1 Score: 189.5 bits (480), Expect = 3.5e-48
Identity = 123/275 (44.73%), Postives = 169/275 (61.45%), Query Frame = 0


Query: 1   MRTVQAALRSLGGGLSQRFKQSSMLRSLSTNAARETGFDDEKRKPDSFESADDFERRIFG 60
           M   + A RSL      R  +  + RSL+TNA      +D  +   SF+S+D+ +  +FG
Sbjct: 1   MSIARFATRSLNNVTFLRPFRPIVSRSLATNAN-----EDPNQNRSSFDSSDNLD-SLFG 60

Query: 61  GVSLDDSGNEAFFEKLDRLGKPRERV-------GSRLSGGNNFQALYGLDDYLNTLSDGM 120
             + +D  +  FF+ L +  K +          GSR SGG +       D+  +  SDG+
Sbjct: 61  DYTGNDEKSNDFFQHLSKAEKDKRDFNGYNRSGGSRYSGGGSMSK----DETFDPSSDGV 120

Query: 121 DGKLKKAATYFEFDPEEISKDDYTFRADMSFKPGSTYEIKDLDLRKPGVRKP-PKRVEFQ 180
           DGKLK+AA  +  D  +  K +Y+FR D +    +++ + +    +  ++ P     + +
Sbjct: 121 DGKLKEAALAYNMDEGDGFK-EYSFRPDFN----NSWGMNNFPRMQKQMQNPRQNNSKSE 180

Query: 181 VTTEEVLKKADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFT 240
           VTTEEVLK ADFRNVRFLANFIT+AGII KR +TGISAKAQRK+AREIKTARAFGLMPFT
Sbjct: 181 VTTEEVLKNADFRNVRFLANFITEAGIIIKRKQTGISAKAQRKIAREIKTARAFGLMPFT 240

Query: 241 TMGTKTFVFGKTMEDLDKDYEYEVFDNTADADRGH 268
           TMGTK F FGKTME+ D+D+EYEV D+  + D G+
Sbjct: 241 TMGTKAFQFGKTMENRDQDFEYEVLDDDDEFDEGN 260

The following BLAST results are available for this feature:

BLAST of Moc02g08050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148322.1	1.4e-147	100.00	uncharacterized protein LOC111017003 [Momordica charantia]	[more]
XP_022986919.1	4.2e-128	89.30	uncharacterized protein LOC111484513 [Cucurbita maxima]	[more]
XP_022943865.1	3.6e-127	88.19	uncharacterized protein LOC111448465 [Cucurbita moschata]	[more]
XP_022947026.1	6.1e-127	86.72	uncharacterized protein LOC111451027 isoform X1 [Cucurbita moschata]	[more]
XP_023512473.1	1.0e-126	88.19	uncharacterized protein LOC111777218 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Moc02g08050 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P62659	2.3e-07	40.00	30S ribosomal protein S18 OS=Thermus thermophilus (strain ATCC BAA-163 / DSM 703...	[more]
Q5SLQ0	2.3e-07	40.00	30S ribosomal protein S18 OS=Thermus thermophilus (strain ATCC 27634 / DSM 579 /...	[more]
P80382	6.6e-07	38.75	30S ribosomal protein S18 OS=Thermus thermophilus OX=274 GN=rpsR PE=1 SV=3	[more]
Q8RIE4	2.5e-06	40.91	30S ribosomal protein S18 OS=Fusobacterium nucleatum subsp. nucleatum (strain AT...	[more]
C1CXK0	3.3e-06	37.66	30S ribosomal protein S18 OS=Deinococcus deserti (strain DSM 17065 / CIP 109153 ...	[more]

BLAST of Moc02g08050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D4R9	6.8e-148	100.00	uncharacterized protein LOC111017003 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A6J1JHF0	2.0e-128	89.30	uncharacterized protein LOC111484513 OS=Cucurbita maxima OX=3661 GN=LOC111484513...	[more]
A0A6J1FYC1	1.7e-127	88.19	uncharacterized protein LOC111448465 OS=Cucurbita moschata OX=3662 GN=LOC1114484...	[more]
A0A6J1G586	3.0e-127	86.72	uncharacterized protein LOC111451027 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1KYL3	9.2e-121	85.55	LOW QUALITY PROTEIN: uncharacterized protein LOC111499912 OS=Cucurbita maxima OX...	[more]

BLAST of Moc02g08050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07210.1	3.5e-48	44.73	Ribosomal protein S18	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001648	Ribosomal protein S18	PRINTS	PR00974	RIBOSOMALS18	coord: 221..231 score: 52.07 coord: 189..199 score: 33.33 coord: 207..221 score: 42.42
IPR001648	Ribosomal protein S18	PFAM	PF01084	Ribosomal_S18	coord: 181..229 e-value: 7.7E-16 score: 58.0
IPR001648	Ribosomal protein S18	TIGRFAM	TIGR00165	TIGR00165	coord: 175..232 e-value: 3.9E-12 score: 44.2
IPR001648	Ribosomal protein S18	PANTHER	PTHR13479	30S RIBOSOMAL PROTEIN S18	coord: 27..263
IPR001648	Ribosomal protein S18	HAMAP	MF_00270	Ribosomal_S18	coord: 159..234 score: 15.314635
IPR036870	Ribosomal protein S18 superfamily	GENE3D	4.10.640.10	Ribosomal protein S18	coord: 169..234 e-value: 1.6E-19 score: 71.4
IPR036870	Ribosomal protein S18 superfamily	SUPERFAMILY	46911	Ribosomal protein S18	coord: 161..232
None	No IPR available	PANTHER	PTHR13479:SF40	28S RIBOSOMAL PROTEIN S18C, MITOCHONDRIAL	coord: 27..263

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc02g08050.1	Moc02g08050.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome