Moc02g07310 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc02g07310
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	50S ribosomal protein L20
Location	chr2: 5201632 .. 5203736 (-)
RNA-Seq Expression	Moc02g07310
Synteny	Moc02g07310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAAGGACAAGATATTTAAGCTAGCCAAGGGTTTCAGAGGAAGGGCCAAGAATTGCATAAGGATTGCCAGAGAGCGGGTGGAGAAGGCTCTCCAGTATTCCTACAGGGACCGTCGCAATAAGAAGCGCGACATGCGCTCCCTTTGGATACAACGCATCAATGCTGGTACACGCCTTCATGGGGTATGTGCATTTTCCTTGAATTTTCTTCATCAGACTACCACAGAGTTTATGAGATATTTATGATTTAGAATCACTCTTTGTATTGAGTTTCTTAATTTGCTTTTGTTTTTCCTTTCTTTTTCTTGTTCTTGTTCTTTTTCTTTTCCTCCAAAATACATATATACATAATATATATATATATATATATATAGAATGAAAAAGGTTTTTGAAGAAGAATAGATGGGGGATGGGATCTTTGAACCAAACAAAGAAATTGAAAGATGAAGCTTCCCCATCTTAAACAAGATCAATTGTACAAATTTCAATCAAGAGTAAAGTAAATTACTTGTTACTAGTAAGATCAAAATGTAAAAATTTAACTTTTGTCAACCAGAATAATGGCACTTTATTGCGAGCACCATAGTAAATTAGTAATCCTAATAAATATTTGTTCTTAAAATTACAATCTAAAGATGTCATGTGTTGGAAAGTTGTGCTACTCAATAGGTTACCATGTTCTATTGAGAGAGATGAAAAGAGGTATATCCTATAGACGATCAATATTACCAGTTGCATCATTCTTTTGGACTGTTGGATGTGATTGTGGAGGACAGTGACTTCCTCTTATTAGACCGTTGAAGATTTATTTCCTCCTTTTTTTTGGGTGGGGGCTGAGGAATGGGGGAAACTGCTTTTCAAATTTCCACCTCTGTTATTCTCATGTCCCTTAATTTTGGCTTCTAAGCCTGTTCCTTTCGTTCTTTCTAGACCTTTTTTTTAATTTTTATTTTTATTAAAAAACAGAGTATATTGCTCAAAAAAATAGGGGACAGACTAAGGGTAGGGGATGTGGGATCCCCAAAAGAGCTAGAAAAATACAACTTTCCAACCCAAATTGATCCTGACTAAACTGTAGTTACAAAAGAATTCTTAGGGTTAAGACACCACAAGGGCGTACTAATTTGTCCACATTCACAAAAATCCTCAAAGGGACGGGCAATGTCGTTGAAAACTCATTGATTTCTTTCCTTCCAAATGCACTGAAAAATAGATCTAGCAACACAACTCCAAAGGACTTTGGAGTTTGGCCTTTCCTTTCAAGAACCAACCCTGAAGAACTTCAAGAAGCTACTCATCCACAAGCTTGGGAAAATAGCTAGAAAACTGAATTCCCCCCAACAAGAACCACATTTGGAAGCACAAGTACAAGGAGATGTGGTCAATACTTTCAGCATTATTTAAGCAAAAACAGCACACTGAGGGAGATAAACTCCAAGTAGGAAGCTTTTCTGCAACTTATCAAGGGTATTTAAAATTCTGTAGGCTAGACTCCACAAGAAAAACTTGACCTTCGGGTAGTTGAAGTTCCAAATTGCATAGTTTTATGTGATTCATGAAGTTCTGCACTTTCTGCTCTACTGGTTTAATTTTTTAGTGGGAGAAATGAAATTTTCTTTAGGTCGAATAATTACTGTAAATTTAATAATACTTGTGTTCTCCATGATCAATTTGCTTCTTCTATTTCAATAACATCTACTTGGGAAACACGTAAATTATTCAGAATGTTCTATGATTGTGGTAGGTTTCTCACTTTCTACATCAATATGAATTGCCTCTTATTCCCGATCAATGTTGAATTCTTTACAAGTTACTCAAAAATATTATACTTCTATATGTTTGGATAATTTTCCATGTAGAGAGACTAACGTGTTTTTTTTTTTTTTTTGTCTCCCACCCTACCATATTAGGTAAATTATGGCAATTTTATGCATGGGCTGATGAAGGAGAACGTTCAACTAAACAGAAAAGTATTATCAGAGATCTCAATGCACGAACCTTATAGTTTCAAGGCCCTGGTAGACATCTCTCGTAATGCATTTCCTGGAAACAAGAATGTAGTGCTTCCCCCCAAGAAGGATGGCATTTCCATAGTTGTTTAA

mRNA sequence

ATGAACAAGGACAAGATATTTAAGCTAGCCAAGGGTTTCAGAGGAAGGGCCAAGAATTGCATAAGGATTGCCAGAGAGCGGGTGGAGAAGGCTCTCCAGTATTCCTACAGGGACCGTCGCAATAAGAAGCGCGACATGCGCTCCCTTTGGATACAACGCATCAATGCTGGTACACGCCTTCATGGGGTAAATTATGGCAATTTTATGCATGGGCTGATGAAGGAGAACGTTCAACTAAACAGAAAAGTATTATCAGAGATCTCAATGCACGAACCTTATAGTTTCAAGGCCCTGGTAGACATCTCTCGTAATGCATTTCCTGGAAACAAGAATGTAGTGCTTCCCCCCAAGAAGGATGGCATTTCCATAGTTGTTTAA

Coding sequence (CDS)

ATGAACAAGGACAAGATATTTAAGCTAGCCAAGGGTTTCAGAGGAAGGGCCAAGAATTGCATAAGGATTGCCAGAGAGCGGGTGGAGAAGGCTCTCCAGTATTCCTACAGGGACCGTCGCAATAAGAAGCGCGACATGCGCTCCCTTTGGATACAACGCATCAATGCTGGTACACGCCTTCATGGGGTAAATTATGGCAATTTTATGCATGGGCTGATGAAGGAGAACGTTCAACTAAACAGAAAAGTATTATCAGAGATCTCAATGCACGAACCTTATAGTTTCAAGGCCCTGGTAGACATCTCTCGTAATGCATTTCCTGGAAACAAGAATGTAGTGCTTCCCCCCAAGAAGGATGGCATTTCCATAGTTGTTTAA

Protein sequence

MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVLPPKKDGISIVV

Homology

[Close]

BLAST of Moc02g07310 vs. NCBI nr
Match: XP_022149620.1 (uncharacterized protein LOC111018005 [Momordica charantia] >XP_022149621.1 uncharacterized protein LOC111018005 [Momordica charantia])

HSP 1 Score: 251.9 bits (642), Expect = 2.9e-63
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVLPPKKDG 120
           HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVLPPKKDG
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVLPPKKDG 120

Query: 121 ISIVV 126
           ISIVV
Sbjct: 121 ISIVV 125

[Close]

BLAST of Moc02g07310 vs. NCBI nr
Match: XP_023007267.1 (uncharacterized protein LOC111499805 [Cucurbita maxima] >XP_023532681.1 uncharacterized protein LOC111794775 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 246.5 bits (628), Expect = 1.2e-61
Identity = 119/125 (95.20%), Postives = 124/125 (99.20%), Query Frame = 0


Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVLPPKKDG 120
           HGVNYGNFMHGLMKEN+QLNRKVLSE+SMHEPYSFK+LVDISRNAFPGNKNVV PPKKDG
Sbjct: 61  HGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRNAFPGNKNVVFPPKKDG 120

Query: 121 ISIVV 126
           IS+V+
Sbjct: 121 ISVVL 125

[Close]

BLAST of Moc02g07310 vs. NCBI nr
Match: XP_022985864.1 (uncharacterized protein LOC111483787 [Cucurbita maxima] >XP_022985865.1 uncharacterized protein LOC111483787 [Cucurbita maxima] >XP_022985866.1 uncharacterized protein LOC111483787 [Cucurbita maxima])

HSP 1 Score: 245.7 bits (626), Expect = 2.1e-61
Identity = 120/125 (96.00%), Postives = 123/125 (98.40%), Query Frame = 0


Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVLPPKKDG 120
           HGVNYGNFMHGLMKENVQLNRKVLSE+SMHEPYSFKALVDISRNAFPGNKNVV PPKKD 
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120

Query: 121 ISIVV 126
           +S+VV
Sbjct: 121 VSMVV 125

[Close]

BLAST of Moc02g07310 vs. NCBI nr
Match: XP_022943497.1 (uncharacterized protein LOC111448251 [Cucurbita moschata] >XP_022943498.1 uncharacterized protein LOC111448251 [Cucurbita moschata] >XP_022943499.1 uncharacterized protein LOC111448251 [Cucurbita moschata] >KAG6570598.1 hypothetical protein SDJN03_29513, partial [Cucurbita argyrosperma subsp. sororia] >KAG7010448.1 rplT [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 245.4 bits (625), Expect = 2.7e-61
Identity = 119/125 (95.20%), Postives = 123/125 (98.40%), Query Frame = 0


Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVLPPKKDG 120
           HGVNYGNFMHGLMKENVQLNRKVLSE+SMHEPYSFKALVDISRNAFPGNKNVV PPKKD 
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120

Query: 121 ISIVV 126
           +S++V
Sbjct: 121 VSMIV 125

[Close]

BLAST of Moc02g07310 vs. NCBI nr
Match: XP_004139908.1 (uncharacterized protein LOC101216644 [Cucumis sativus] >XP_031744108.1 uncharacterized protein LOC101216644 [Cucumis sativus] >XP_031744109.1 uncharacterized protein LOC101216644 [Cucumis sativus] >XP_031744110.1 uncharacterized protein LOC101216644 [Cucumis sativus] >KGN46794.1 hypothetical protein Csa_020818 [Cucumis sativus])

HSP 1 Score: 244.6 bits (623), Expect = 4.6e-61
Identity = 120/125 (96.00%), Postives = 122/125 (97.60%), Query Frame = 0


Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVLPPKKDG 120
           HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVV PPKKD 
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120

Query: 121 ISIVV 126
            S++V
Sbjct: 121 ASMIV 125

[Close]

BLAST of Moc02g07310 vs. ExPASy Swiss-Prot
Match: B6IPJ8 (50S ribosomal protein L20 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX=414684 GN=rplT PE=3 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 4.6e-32
Identity = 65/101 (64.36%), Postives = 82/101 (81.19%), Query Frame = 0


Query: 5   KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVN 64
           K+ KLAKG+RGR+  C RIA ERVEKAL+Y+YRDRRN+KRD R LWIQRINAG RLHG+ 
Sbjct: 16  KVLKLAKGYRGRSSKCYRIALERVEKALRYAYRDRRNRKRDFRGLWIQRINAGARLHGLT 75

Query: 65  YGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNA 106
           Y  FMHGL +  ++++RKVLS+I+  EP SFKALV+ ++ A
Sbjct: 76  YSKFMHGLKRAGIEVDRKVLSDIAAREPESFKALVEQAQKA 116

[Close]

BLAST of Moc02g07310 vs. ExPASy Swiss-Prot
Match: Q3YSX0 (50S ribosomal protein L20 OS=Ehrlichia canis (strain Jake) OX=269484 GN=rplT PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.8e-29
Identity = 61/101 (60.40%), Postives = 81/101 (80.20%), Query Frame = 0


Query: 5   KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVN 64
           K+ KLAKG+RGR+KNC RIA +RVEKALQY+YRDRRN+KR  RSLWI RINA  R HG+ 
Sbjct: 16  KVIKLAKGYRGRSKNCYRIALQRVEKALQYAYRDRRNRKRFFRSLWIMRINAAARQHGLL 75

Query: 65  YGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNA 106
           Y +F+HGL   N+ LNRKVL++++++   +FK +VDI++ A
Sbjct: 76  YSDFIHGLSLANITLNRKVLADMAVNNQDNFKQIVDITKEA 116

[Close]

BLAST of Moc02g07310 vs. ExPASy Swiss-Prot
Match: Q2GHR2 (50S ribosomal protein L20 OS=Ehrlichia chaffeensis (strain ATCC CRL-10679 / Arkansas) OX=205920 GN=rplT PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.4e-28
Identity = 61/101 (60.40%), Postives = 79/101 (78.22%), Query Frame = 0


Query: 5   KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVN 64
           K+ KLAKG+RGR+KNC RIA +RVEKALQY+YRDRRN+KR  RSLWI RINA  R HG+ 
Sbjct: 16  KVIKLAKGYRGRSKNCYRIALQRVEKALQYAYRDRRNRKRFFRSLWIMRINAAVRQHGLL 75

Query: 65  YGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNA 106
           Y +F+HGL   NV LNRKVL++++++    FK +VD+ + A
Sbjct: 76  YSDFIHGLSLANVTLNRKVLADMAVNHKDHFKQIVDLIKEA 116

[Close]

BLAST of Moc02g07310 vs. ExPASy Swiss-Prot
Match: Q11KK1 (50S ribosomal protein L20 OS=Chelativorans sp. (strain BNC1) OX=266779 GN=rplT PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.4e-28
Identity = 60/107 (56.07%), Postives = 83/107 (77.57%), Query Frame = 0


Query: 5   KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVN 64
           K+ K AKGF GR KN IRIA++ VEK+LQY+YRDR+N+KR+ R+LWIQRINA TR HG+ 
Sbjct: 16  KVLKAAKGFYGRRKNTIRIAKQAVEKSLQYAYRDRKNRKRNFRALWIQRINAATREHGLT 75

Query: 65  YGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKN 112
           YG F+ GL K  ++++RKVL+++++HEP +F ALV  S+ +    KN
Sbjct: 76  YGRFIDGLNKAGIEIDRKVLADMAVHEPQAFAALVAKSKASLEYLKN 122

[Close]

BLAST of Moc02g07310 vs. ExPASy Swiss-Prot
Match: Q5FH69 (50S ribosomal protein L20 OS=Ehrlichia ruminantium (strain Gardel) OX=302409 GN=rplT PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.1e-28
Identity = 57/101 (56.44%), Postives = 81/101 (80.20%), Query Frame = 0


Query: 5   KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVN 64
           K+ KLAKG+RGR+KNC R+A +RVEKALQY+YRDRRN+KR  RSLWI RINA  R +G+ 
Sbjct: 16  KVIKLAKGYRGRSKNCYRVALQRVEKALQYAYRDRRNRKRFFRSLWIMRINAAVRQYGLL 75

Query: 65  YGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNA 106
           Y +F++GL   N+ LNRK+L+++++H   +FK +VD+++ A
Sbjct: 76  YSDFIYGLSLANITLNRKILADMAVHNKDNFKQIVDLTKEA 116

[Close]

BLAST of Moc02g07310 vs. ExPASy TrEMBL
Match: A0A6J1D684 (50S ribosomal protein L20 OS=Momordica charantia OX=3673 GN=LOC111018005 PE=3 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 1.4e-63
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVLPPKKDG 120
           HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVLPPKKDG
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVLPPKKDG 120

Query: 121 ISIVV 126
           ISIVV
Sbjct: 121 ISIVV 125

[Close]

BLAST of Moc02g07310 vs. ExPASy TrEMBL
Match: A0A6J1KY75 (50S ribosomal protein L20 OS=Cucurbita maxima OX=3661 GN=LOC111499805 PE=3 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 5.8e-62
Identity = 119/125 (95.20%), Postives = 124/125 (99.20%), Query Frame = 0


Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVLPPKKDG 120
           HGVNYGNFMHGLMKEN+QLNRKVLSE+SMHEPYSFK+LVDISRNAFPGNKNVV PPKKDG
Sbjct: 61  HGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRNAFPGNKNVVFPPKKDG 120

Query: 121 ISIVV 126
           IS+V+
Sbjct: 121 ISVVL 125

[Close]

BLAST of Moc02g07310 vs. ExPASy TrEMBL
Match: A0A6J1JCG1 (50S ribosomal protein L20 OS=Cucurbita maxima OX=3661 GN=LOC111483787 PE=3 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 9.9e-62
Identity = 120/125 (96.00%), Postives = 123/125 (98.40%), Query Frame = 0


Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVLPPKKDG 120
           HGVNYGNFMHGLMKENVQLNRKVLSE+SMHEPYSFKALVDISRNAFPGNKNVV PPKKD 
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120

Query: 121 ISIVV 126
           +S+VV
Sbjct: 121 VSMVV 125

[Close]

BLAST of Moc02g07310 vs. ExPASy TrEMBL
Match: A0A6J1FUI3 (50S ribosomal protein L20 OS=Cucurbita moschata OX=3662 GN=LOC111448251 PE=3 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.3e-61
Identity = 119/125 (95.20%), Postives = 123/125 (98.40%), Query Frame = 0


Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVLPPKKDG 120
           HGVNYGNFMHGLMKENVQLNRKVLSE+SMHEPYSFKALVDISRNAFPGNKNVV PPKKD 
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120

Query: 121 ISIVV 126
           +S++V
Sbjct: 121 VSMIV 125

[Close]

BLAST of Moc02g07310 vs. ExPASy TrEMBL
Match: A0A0A0KD68 (50S ribosomal protein L20 OS=Cucumis sativus OX=3659 GN=Csa_6G135990 PE=3 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 2.2e-61
Identity = 120/125 (96.00%), Postives = 122/125 (97.60%), Query Frame = 0


Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVLPPKKDG 120
           HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVV PPKKD 
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120

Query: 121 ISIVV 126
            S++V
Sbjct: 121 ASMIV 125

[Close]

BLAST of Moc02g07310 vs. TAIR 10
Match: AT1G16740.1 (Ribosomal protein L20 )

HSP 1 Score: 213.0 bits (541), Expect = 1.4e-55
Identity = 103/124 (83.06%), Postives = 114/124 (91.94%), Query Frame = 0


Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNK +IFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKR+MR LWI+RINAG+R 
Sbjct: 1   MNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKREMRGLWIERINAGSRQ 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVLPPKKDG 120
           HGVNYGNF+HGLMKEN+QLNRKVLSE+SMHEPYSFKALVD+SR +FPGNKNVV   +K  
Sbjct: 61  HGVNYGNFIHGLMKENIQLNRKVLSELSMHEPYSFKALVDVSRKSFPGNKNVVQASRKVD 120

Query: 121 ISIV 125
           IS +
Sbjct: 121 ISSI 124

[Close]

BLAST of Moc02g07310 vs. TAIR 10
Match: ATCG00660.1 (ribosomal protein L20 )

HSP 1 Score: 61.6 bits (148), Expect = 5.1e-10
Identity = 35/89 (39.33%), Postives = 52/89 (58.43%), Query Frame = 0


Query: 3   KDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHG 62
           + K+   A  FRG      R   ++  +AL  ++RDR  +KRD R LWI RINA     G
Sbjct: 14  RTKLRLFASSFRGAHSRLTRTMTQQRIRALVSAHRDRGKRKRDFRRLWITRINAVIHEMG 73

Query: 63  V--NYGNFMHGLMKENVQLNRKVLSEISM 90
           V  +Y  F+H L K+ + LNRK+L++I++
Sbjct: 74  VFYSYNEFIHNLYKKQLLLNRKILAQIAL 102

The following BLAST results are available for this feature:

BLAST of Moc02g07310 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022149620.1	2.9e-63	100.00	uncharacterized protein LOC111018005 [Momordica charantia] >XP_022149621.1 uncha...	[more]
XP_023007267.1	1.2e-61	95.20	uncharacterized protein LOC111499805 [Cucurbita maxima] >XP_023532681.1 uncharac...	[more]
XP_022985864.1	2.1e-61	96.00	uncharacterized protein LOC111483787 [Cucurbita maxima] >XP_022985865.1 uncharac...	[more]
XP_022943497.1	2.7e-61	95.20	uncharacterized protein LOC111448251 [Cucurbita moschata] >XP_022943498.1 unchar...	[more]
XP_004139908.1	4.6e-61	96.00	uncharacterized protein LOC101216644 [Cucumis sativus] >XP_031744108.1 uncharact...	[more]

BLAST of Moc02g07310 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B6IPJ8	4.6e-32	64.36	50S ribosomal protein L20 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX...	[more]
Q3YSX0	2.8e-29	60.40	50S ribosomal protein L20 OS=Ehrlichia canis (strain Jake) OX=269484 GN=rplT PE=...	[more]
Q2GHR2	1.4e-28	60.40	50S ribosomal protein L20 OS=Ehrlichia chaffeensis (strain ATCC CRL-10679 / Arka...	[more]
Q11KK1	2.4e-28	56.07	50S ribosomal protein L20 OS=Chelativorans sp. (strain BNC1) OX=266779 GN=rplT P...	[more]
Q5FH69	3.1e-28	56.44	50S ribosomal protein L20 OS=Ehrlichia ruminantium (strain Gardel) OX=302409 GN=...	[more]

BLAST of Moc02g07310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D684	1.4e-63	100.00	50S ribosomal protein L20 OS=Momordica charantia OX=3673 GN=LOC111018005 PE=3 SV...	[more]
A0A6J1KY75	5.8e-62	95.20	50S ribosomal protein L20 OS=Cucurbita maxima OX=3661 GN=LOC111499805 PE=3 SV=1	[more]
A0A6J1JCG1	9.9e-62	96.00	50S ribosomal protein L20 OS=Cucurbita maxima OX=3661 GN=LOC111483787 PE=3 SV=1	[more]
A0A6J1FUI3	1.3e-61	95.20	50S ribosomal protein L20 OS=Cucurbita moschata OX=3662 GN=LOC111448251 PE=3 SV=...	[more]
A0A0A0KD68	2.2e-61	96.00	50S ribosomal protein L20 OS=Cucumis sativus OX=3659 GN=Csa_6G135990 PE=3 SV=1	[more]

BLAST of Moc02g07310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G16740.1	1.4e-55	83.06	Ribosomal protein L20	[more]
ATCG00660.1	5.1e-10	39.33	ribosomal protein L20	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005813	Ribosomal protein L20	PRINTS	PR00062	RIBOSOMALL20	coord: 64..90 score: 38.05 coord: 1..30 score: 33.03 coord: 31..60 score: 58.08
IPR005813	Ribosomal protein L20	PFAM	PF00453	Ribosomal_L20	coord: 3..98 e-value: 3.7E-41 score: 139.6
IPR005813	Ribosomal protein L20	TIGRFAM	TIGR01032	TIGR01032	coord: 3..102 e-value: 1.5E-38 score: 129.5
IPR005813	Ribosomal protein L20	PANTHER	PTHR10986	39S RIBOSOMAL PROTEIN L20	coord: 1..122
IPR005813	Ribosomal protein L20	PROSITE	PS00937	RIBOSOMAL_L20	coord: 43..59
IPR005813	Ribosomal protein L20	HAMAP	MF_00382	Ribosomal_L20	coord: 1..104 score: 22.209963
IPR005813	Ribosomal protein L20	CDD	cd07026	Ribosomal_L20	coord: 5..100 e-value: 6.75439E-50 score: 152.253
IPR035566	Ribosomal protein L20, C-terminal	GENE3D	1.10.1900.20	Ribosomal protein L20	coord: 45..106 e-value: 1.7E-26 score: 93.5
IPR035566	Ribosomal protein L20, C-terminal	SUPERFAMILY	74731	Ribosomal protein L20	coord: 2..105
None	No IPR available	GENE3D	6.10.160.10		coord: 1..44 e-value: 3.7E-20 score: 73.8
None	No IPR available	PANTHER	PTHR10986:SF24	50S RIBOSOMAL PROTEIN L20	coord: 1..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc02g07310.1	Moc02g07310.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000027	ribosomal large subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome